Wall clock time and date at job start Mon Mar 30 2020 00:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47221 * 2 1 4 4 C 1.53000 * 109.46850 * 239.99678 * 2 1 3 5 5 N 1.46504 * 109.46907 * 175.00081 * 4 2 1 6 6 C 1.34431 * 126.82125 * 125.00003 * 5 4 2 7 7 N 1.30837 * 108.07746 * 179.97438 * 6 5 4 8 8 C 1.33243 * 109.82534 * 0.02562 * 7 6 5 9 9 N 1.30713 * 108.94972 * 359.74735 * 8 7 6 10 10 N 1.46905 * 109.47094 * 119.99847 * 2 1 3 11 11 C 1.46901 * 110.99870 * 274.99984 * 10 2 1 12 12 C 1.53004 * 109.46916 * 180.02562 * 11 10 2 13 13 C 1.52999 * 109.46923 * 299.99733 * 12 11 10 14 14 C 1.52999 * 109.46998 * 59.99872 * 12 11 10 15 15 C 1.52996 * 109.46700 * 179.97438 * 12 11 10 16 16 C 1.50701 * 109.46820 * 179.97438 * 15 12 11 17 17 H 1.08000 * 120.00070 * 0.02562 * 16 15 12 18 18 C 1.37878 * 120.00019 * 179.97438 * 16 15 12 19 19 N 1.31515 * 120.00228 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 120.00068 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.46779 * 90.00373 * 20 18 16 22 22 H 1.48498 * 109.46986 * 210.00365 * 20 18 16 23 23 H 1.48503 * 109.47043 * 330.00844 * 20 18 16 24 24 H 1.08997 * 109.47624 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47163 * 300.00582 * 1 2 3 26 26 H 1.08999 * 109.47123 * 59.99965 * 1 2 3 27 27 H 1.08994 * 109.47174 * 295.00027 * 4 2 1 28 28 H 1.08993 * 109.47332 * 55.00709 * 4 2 1 29 29 H 1.07995 * 125.96337 * 359.97438 * 6 5 4 30 30 H 1.08005 * 125.52350 * 180.02562 * 8 7 6 31 31 H 1.00901 * 110.99869 * 151.04696 * 10 2 1 32 32 H 1.09004 * 109.47031 * 299.99620 * 11 10 2 33 33 H 1.08995 * 109.47111 * 59.99900 * 11 10 2 34 34 H 1.09002 * 109.47301 * 60.00027 * 13 12 11 35 35 H 1.09001 * 109.47017 * 180.02562 * 13 12 11 36 36 H 1.09005 * 109.47249 * 300.00302 * 13 12 11 37 37 H 1.09001 * 109.46999 * 60.00126 * 14 12 11 38 38 H 1.09001 * 109.46478 * 179.97438 * 14 12 11 39 39 H 1.08993 * 109.47197 * 299.99817 * 14 12 11 40 40 H 1.08993 * 109.47740 * 299.99810 * 15 12 11 41 41 H 1.09005 * 109.47573 * 59.99976 * 15 12 11 42 42 H 0.97002 * 120.00555 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 3.5000 -0.6180 -1.3109 6 6 4.3761 -1.6329 -1.4089 7 7 5.5823 -1.1267 -1.4367 8 6 5.5168 0.2018 -1.3582 9 7 4.2623 0.5613 -1.2846 10 7 2.0197 -0.6925 1.1995 11 6 2.0824 0.2227 2.3469 12 6 2.5962 -0.5328 3.5742 13 6 1.6472 -1.6891 3.8955 14 6 3.9935 -1.0850 3.2852 15 6 2.6622 0.4205 4.7691 16 6 3.1677 -0.3237 5.9781 17 1 3.4173 -1.3717 5.9017 18 6 3.3124 0.3336 7.1815 19 7 3.0089 1.6098 7.2744 20 14 3.9397 -0.5888 8.6800 21 1 5.4207 -0.4955 8.7345 22 1 3.3603 0.0110 9.9087 23 1 3.5366 -2.0151 8.5878 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.7516 -1.7715 -1.2055 28 1 1.6054 -0.2618 -2.1369 29 1 4.1277 -2.6828 -1.4565 30 1 6.3629 0.8730 -1.3601 31 1 2.9173 -1.1205 1.0288 32 1 2.7589 1.0462 2.1182 33 1 1.0871 0.6164 2.5525 34 1 1.6006 -2.3682 3.0441 35 1 2.0130 -2.2270 4.7701 36 1 0.6517 -1.2957 4.1014 37 1 4.6696 -0.2611 3.0563 38 1 4.3596 -1.6228 4.1597 39 1 3.9469 -1.7640 2.4338 40 1 3.3384 1.2440 4.5400 41 1 1.6669 0.8143 4.9752 42 1 3.1104 2.0722 8.1210 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595052221.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:21 Heat of formation + Delta-G solvation = 73.934869 kcal Electronic energy + Delta-G solvation = -20867.402988 eV Core-core repulsion = 17883.916778 eV Total energy + Delta-G solvation = -2983.486210 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.15959 -38.19718 -36.09173 -33.24851 -32.23485 -31.29168 -30.07495 -26.97896 -26.89001 -26.32821 -25.12027 -22.73807 -22.15233 -22.01436 -20.33880 -18.02739 -17.42672 -16.32369 -16.00374 -15.93514 -15.09946 -14.67229 -14.44993 -14.26330 -13.82034 -13.34112 -13.02326 -12.93337 -12.66126 -12.24991 -12.10217 -12.00165 -11.84977 -11.76198 -11.19298 -10.93058 -10.81863 -10.76329 -10.50573 -10.26171 -10.14321 -10.09961 -9.89594 -9.78935 -9.69553 -9.02607 -8.82882 -8.31107 -8.21865 -5.95466 -3.95761 1.52458 2.17166 2.88922 3.33977 3.40462 3.43276 4.06056 4.21786 4.39184 4.50218 4.66471 4.77945 4.94428 5.09978 5.31681 5.40246 5.44698 5.62379 5.70752 5.75964 5.88430 5.95910 6.10729 6.17514 6.25615 6.30859 6.32762 6.49529 6.63062 6.66414 6.77014 6.81015 7.15419 7.19237 7.23862 7.34106 7.55339 7.70496 7.85235 7.97621 8.04398 8.48592 9.09386 9.67046 11.16207 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.023739 B = 0.004548 C = 0.004162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.197362 B = 6155.014956 C = 6726.487152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.068 3.932 3 H 0.057 0.943 4 C 0.126 3.874 5 N -0.379 5.379 6 C 0.253 3.747 7 N -0.547 5.547 8 C 0.197 3.803 9 N -0.316 5.316 10 N -0.679 5.679 11 C 0.072 3.928 12 C -0.057 4.057 13 C -0.115 4.115 14 C -0.125 4.125 15 C 0.034 3.966 16 C -0.507 4.507 17 H 0.059 0.941 18 C 0.055 3.945 19 N -0.897 5.897 20 Si 0.888 3.112 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.274 1.274 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.054 0.946 27 H 0.109 0.891 28 H 0.093 0.907 29 H 0.218 0.782 30 H 0.215 0.785 31 H 0.335 0.665 32 H 0.023 0.977 33 H 0.067 0.933 34 H 0.041 0.959 35 H 0.054 0.946 36 H 0.039 0.961 37 H 0.038 0.962 38 H 0.064 0.936 39 H 0.028 0.972 40 H 0.012 0.988 41 H 0.015 0.985 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.505 -5.679 -18.831 19.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.043 4.043 3 H 0.075 0.925 4 C 0.004 3.996 5 N -0.170 5.170 6 C -0.044 4.044 7 N -0.274 5.274 8 C -0.106 4.106 9 N -0.143 5.143 10 N -0.312 5.312 11 C -0.056 4.056 12 C -0.058 4.058 13 C -0.172 4.172 14 C -0.182 4.182 15 C -0.003 4.003 16 C -0.545 4.545 17 H 0.077 0.923 18 C -0.146 4.146 19 N -0.537 5.537 20 Si 0.716 3.284 21 H -0.208 1.208 22 H -0.214 1.214 23 H -0.199 1.199 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.127 0.873 28 H 0.111 0.889 29 H 0.234 0.766 30 H 0.231 0.769 31 H 0.154 0.846 32 H 0.041 0.959 33 H 0.086 0.914 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.083 0.917 39 H 0.047 0.953 40 H 0.030 0.970 41 H 0.033 0.967 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.161 -5.227 -18.520 19.502 hybrid contribution 1.016 0.046 0.733 1.254 sum -2.146 -5.180 -17.787 18.650 Atomic orbital electron populations 1.21730 0.93276 1.02624 1.01894 1.21823 0.96525 0.97109 0.88818 0.92460 1.22184 0.73678 1.03687 1.00089 1.50629 1.08214 1.04461 1.53739 1.26095 0.84888 0.96737 0.96645 1.70546 1.22859 1.09162 1.24796 1.26007 0.94726 0.91625 0.98203 1.78066 1.04631 1.06083 1.25558 1.60777 1.33150 1.33574 1.03674 1.22138 1.00192 0.93147 0.90140 1.20623 0.94077 0.96687 0.94381 1.21590 0.98219 0.97440 0.99948 1.21726 0.96960 0.99483 1.00040 1.19115 0.96943 0.93546 0.90733 1.21223 1.42867 0.96273 0.94140 0.92327 1.25015 0.95845 0.94834 0.98867 1.69967 1.49164 1.08985 1.25615 0.86663 0.78978 0.80048 0.82733 1.20810 1.21353 1.19905 0.91712 0.91633 0.92670 0.87281 0.88920 0.76618 0.76865 0.84560 0.95869 0.91444 0.94037 0.92662 0.94147 0.94307 0.91658 0.95299 0.96989 0.96685 0.93162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.41 37.16 0.35 -0.97 16 2 C 0.07 0.77 2.77 -67.71 -0.19 0.58 16 3 H 0.06 0.78 7.76 -51.93 -0.40 0.38 16 4 C 0.13 1.07 6.04 -4.04 -0.02 1.04 16 5 N -0.38 -4.11 2.99 -62.63 -0.19 -4.29 16 6 C 0.25 2.56 12.61 -90.65 -1.14 1.41 16 7 N -0.55 -6.87 11.19 -15.83 -0.18 -7.05 16 8 C 0.20 2.44 13.03 -91.81 -1.20 1.24 16 9 N -0.32 -4.21 12.54 29.29 0.37 -3.84 16 10 N -0.68 -9.44 5.52 -106.72 -0.59 -10.03 16 11 C 0.07 1.27 4.45 -3.82 -0.02 1.26 16 12 C -0.06 -1.16 0.60 -154.51 -0.09 -1.25 16 13 C -0.11 -2.21 8.06 37.16 0.30 -1.91 16 14 C -0.12 -2.43 7.89 37.16 0.29 -2.13 16 15 C 0.03 0.87 4.04 -27.88 -0.11 0.76 16 16 C -0.51 -14.01 7.65 -34.44 -0.26 -14.28 16 17 H 0.06 1.58 5.68 -52.49 -0.30 1.28 16 18 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 19 N -0.90 -27.11 13.29 55.43 0.74 -26.37 16 20 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 23 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.74 7.45 -51.93 -0.39 0.36 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.11 0.67 8.09 -51.93 -0.42 0.25 16 28 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.22 1.24 8.06 -52.49 -0.42 0.82 16 30 H 0.22 1.97 8.06 -52.48 -0.42 1.55 16 31 H 0.33 4.80 5.79 -39.29 -0.23 4.58 16 32 H 0.02 0.44 8.06 -51.93 -0.42 0.02 16 33 H 0.07 1.21 7.44 -51.93 -0.39 0.82 16 34 H 0.04 0.70 7.60 -51.93 -0.39 0.31 16 35 H 0.05 1.15 6.62 -51.93 -0.34 0.80 16 36 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.06 1.36 6.62 -51.93 -0.34 1.02 16 39 H 0.03 0.48 6.57 -51.93 -0.34 0.14 16 40 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 337.48 15.07 5.09 5.09 Total: -1.00 -32.48 337.48 -8.88 -41.36 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -6.90 Total: 1.15 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: -2.19 Total: -12.77 kcal Atomic # 7 Polarization: -51.74 SS G_CDS: 0.15 Total: -51.59 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.48 -8.88 -41.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595052221.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.295 kcal (2) G-P(sol) polarization free energy of solvation -32.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds