Wall clock time and date at job start Mon Mar 30 2020 00:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47221 * 2 1 4 4 C 1.53000 * 109.46850 * 239.99678 * 2 1 3 5 5 N 1.46504 * 109.46907 * 175.00081 * 4 2 1 6 6 C 1.34431 * 126.82125 * 125.00003 * 5 4 2 7 7 N 1.30837 * 108.07746 * 179.97438 * 6 5 4 8 8 C 1.33243 * 109.82534 * 0.02562 * 7 6 5 9 9 N 1.30713 * 108.94972 * 359.74735 * 8 7 6 10 10 N 1.46905 * 109.47094 * 119.99847 * 2 1 3 11 11 C 1.46901 * 110.99870 * 274.99984 * 10 2 1 12 12 C 1.53004 * 109.46916 * 180.02562 * 11 10 2 13 13 C 1.52999 * 109.46923 * 299.99733 * 12 11 10 14 14 C 1.52999 * 109.46998 * 59.99872 * 12 11 10 15 15 C 1.52996 * 109.46700 * 179.97438 * 12 11 10 16 16 C 1.50701 * 109.46820 * 179.97438 * 15 12 11 17 17 H 1.08000 * 120.00070 * 0.02562 * 16 15 12 18 18 C 1.37878 * 120.00019 * 179.97438 * 16 15 12 19 19 N 1.31515 * 120.00228 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 120.00068 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.46779 * 90.00373 * 20 18 16 22 22 H 1.48498 * 109.46986 * 210.00365 * 20 18 16 23 23 H 1.48503 * 109.47043 * 330.00844 * 20 18 16 24 24 H 1.08997 * 109.47624 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47163 * 300.00582 * 1 2 3 26 26 H 1.08999 * 109.47123 * 59.99965 * 1 2 3 27 27 H 1.08994 * 109.47174 * 295.00027 * 4 2 1 28 28 H 1.08993 * 109.47332 * 55.00709 * 4 2 1 29 29 H 1.07995 * 125.96337 * 359.97438 * 6 5 4 30 30 H 1.08005 * 125.52350 * 180.02562 * 8 7 6 31 31 H 1.00901 * 110.99869 * 151.04696 * 10 2 1 32 32 H 1.09004 * 109.47031 * 299.99620 * 11 10 2 33 33 H 1.08995 * 109.47111 * 59.99900 * 11 10 2 34 34 H 1.09002 * 109.47301 * 60.00027 * 13 12 11 35 35 H 1.09001 * 109.47017 * 180.02562 * 13 12 11 36 36 H 1.09005 * 109.47249 * 300.00302 * 13 12 11 37 37 H 1.09001 * 109.46999 * 60.00126 * 14 12 11 38 38 H 1.09001 * 109.46478 * 179.97438 * 14 12 11 39 39 H 1.08993 * 109.47197 * 299.99817 * 14 12 11 40 40 H 1.08993 * 109.47740 * 299.99810 * 15 12 11 41 41 H 1.09005 * 109.47573 * 59.99976 * 15 12 11 42 42 H 0.97002 * 120.00555 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 3.5000 -0.6180 -1.3109 6 6 4.3761 -1.6329 -1.4089 7 7 5.5823 -1.1267 -1.4367 8 6 5.5168 0.2018 -1.3582 9 7 4.2623 0.5613 -1.2846 10 7 2.0197 -0.6925 1.1995 11 6 2.0824 0.2227 2.3469 12 6 2.5962 -0.5328 3.5742 13 6 1.6472 -1.6891 3.8955 14 6 3.9935 -1.0850 3.2852 15 6 2.6622 0.4205 4.7691 16 6 3.1677 -0.3237 5.9781 17 1 3.4173 -1.3717 5.9017 18 6 3.3124 0.3336 7.1815 19 7 3.0089 1.6098 7.2744 20 14 3.9397 -0.5888 8.6800 21 1 5.4207 -0.4955 8.7345 22 1 3.3603 0.0110 9.9087 23 1 3.5366 -2.0151 8.5878 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.7516 -1.7715 -1.2055 28 1 1.6054 -0.2618 -2.1369 29 1 4.1277 -2.6828 -1.4565 30 1 6.3629 0.8730 -1.3601 31 1 2.9173 -1.1205 1.0288 32 1 2.7589 1.0462 2.1182 33 1 1.0871 0.6164 2.5525 34 1 1.6006 -2.3682 3.0441 35 1 2.0130 -2.2270 4.7701 36 1 0.6517 -1.2957 4.1014 37 1 4.6696 -0.2611 3.0563 38 1 4.3596 -1.6228 4.1597 39 1 3.9469 -1.7640 2.4338 40 1 3.3384 1.2440 4.5400 41 1 1.6669 0.8143 4.9752 42 1 3.1104 2.0722 8.1210 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595052221.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:20 Heat of formation + Delta-G solvation = 54.919099 kcal Electronic energy + Delta-G solvation = -20868.227573 eV Core-core repulsion = 17883.916778 eV Total energy + Delta-G solvation = -2984.310796 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.97997 -39.55004 -37.38597 -34.76359 -33.79157 -32.14612 -31.26243 -28.88639 -28.02240 -27.68665 -26.64466 -24.49169 -23.13470 -22.84268 -21.27680 -19.64496 -18.37710 -18.24604 -17.17675 -16.91091 -16.49204 -15.95376 -15.75563 -15.40145 -14.99538 -14.91921 -14.51061 -14.02196 -13.88623 -13.69249 -13.55751 -13.23951 -12.95618 -12.84673 -12.70813 -12.60975 -12.51304 -12.30901 -12.17574 -11.91847 -11.88902 -11.42722 -10.98057 -10.94441 -10.83680 -10.77163 -10.53691 -10.53306 -9.44910 -8.16259 -6.24072 0.72502 1.39643 1.40369 1.45433 1.51176 2.04068 2.41962 3.08177 3.17554 3.51607 3.55414 3.88283 4.06432 4.09649 4.13170 4.25035 4.29800 4.34718 4.56443 4.64170 4.70162 4.71215 4.87805 4.92063 5.00352 5.04573 5.14945 5.17663 5.30296 5.39525 5.45504 5.47936 5.48764 5.54820 5.60335 5.81192 5.88619 5.95399 5.98034 6.32227 6.36079 6.90666 7.14950 7.43600 8.96289 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.023739 B = 0.004548 C = 0.004162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.197362 B = 6155.014956 C = 6726.487152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.068 3.932 3 H 0.028 0.972 4 C 0.128 3.872 5 N -0.382 5.382 6 C 0.260 3.740 7 N -0.577 5.577 8 C 0.188 3.812 9 N -0.353 5.353 10 N -0.666 5.666 11 C 0.088 3.912 12 C -0.053 4.053 13 C -0.104 4.104 14 C -0.114 4.114 15 C 0.040 3.960 16 C -0.515 4.515 17 H 0.067 0.933 18 C -0.005 4.005 19 N -0.939 5.939 20 Si 0.958 3.042 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.260 1.260 24 H 0.079 0.921 25 H 0.042 0.958 26 H 0.077 0.923 27 H 0.145 0.855 28 H 0.112 0.888 29 H 0.261 0.739 30 H 0.230 0.770 31 H 0.335 0.665 32 H -0.002 1.002 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.039 0.961 36 H 0.033 0.967 37 H 0.022 0.978 38 H 0.050 0.950 39 H 0.061 0.939 40 H -0.024 1.024 41 H -0.014 1.014 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.985 -8.447 -20.111 22.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.043 4.043 3 H 0.046 0.954 4 C 0.007 3.993 5 N -0.173 5.173 6 C -0.036 4.036 7 N -0.305 5.305 8 C -0.115 4.115 9 N -0.182 5.182 10 N -0.298 5.298 11 C -0.041 4.041 12 C -0.054 4.054 13 C -0.161 4.161 14 C -0.172 4.172 15 C 0.003 3.997 16 C -0.553 4.553 17 H 0.085 0.915 18 C -0.201 4.201 19 N -0.580 5.580 20 Si 0.783 3.217 21 H -0.202 1.202 22 H -0.211 1.211 23 H -0.184 1.184 24 H 0.098 0.902 25 H 0.061 0.939 26 H 0.096 0.904 27 H 0.163 0.837 28 H 0.130 0.870 29 H 0.276 0.724 30 H 0.246 0.754 31 H 0.154 0.846 32 H 0.017 0.983 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.058 0.942 36 H 0.052 0.948 37 H 0.041 0.959 38 H 0.069 0.931 39 H 0.080 0.920 40 H -0.006 1.006 41 H 0.004 0.996 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.657 -8.009 -19.820 21.688 hybrid contribution 1.132 0.942 1.076 1.824 sum -2.525 -7.067 -18.744 20.191 Atomic orbital electron populations 1.21693 0.91734 1.03581 1.01946 1.21887 0.97617 0.95775 0.88994 0.95391 1.22385 0.72453 1.05572 0.98932 1.50747 1.08965 1.03949 1.53671 1.26938 0.84017 0.98120 0.94511 1.70548 1.24515 1.09269 1.26145 1.26421 0.95106 0.92186 0.97804 1.78003 1.05320 1.08016 1.26832 1.60748 1.32882 1.32476 1.03686 1.21780 0.98907 0.92700 0.90760 1.20478 0.95446 0.96158 0.93269 1.21479 0.97177 0.96976 1.00484 1.21602 0.95687 0.99236 1.00628 1.19000 0.94090 0.93584 0.93073 1.21592 1.42165 0.96715 0.94783 0.91478 1.25952 0.96165 0.95660 1.02361 1.70117 1.50617 1.10798 1.26477 0.85547 0.78396 0.79204 0.78540 1.20209 1.21128 1.18418 0.90202 0.93926 0.90384 0.83728 0.86975 0.72385 0.75397 0.84589 0.98342 0.92097 0.90936 0.94228 0.94764 0.95905 0.93108 0.92021 1.00601 0.99607 0.93135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 9.41 71.98 0.68 -1.55 16 2 C 0.07 1.40 2.77 44.91 0.12 1.53 16 3 H 0.03 0.76 7.76 -2.38 -0.02 0.74 16 4 C 0.13 1.72 6.04 86.38 0.52 2.24 16 5 N -0.38 -7.37 2.99 -352.07 -1.05 -8.42 16 6 C 0.26 4.47 12.61 180.36 2.27 6.74 16 7 N -0.58 -13.61 11.19 -203.99 -2.28 -15.90 16 8 C 0.19 4.55 13.03 180.76 2.36 6.90 16 9 N -0.35 -9.21 12.54 -61.24 -0.77 -9.98 16 10 N -0.67 -17.28 5.52 -491.55 -2.71 -19.99 16 11 C 0.09 3.13 4.45 86.30 0.38 3.52 16 12 C -0.05 -2.16 0.60 -52.18 -0.03 -2.19 16 13 C -0.10 -3.86 8.06 71.98 0.58 -3.28 16 14 C -0.11 -4.37 7.89 71.98 0.57 -3.80 16 15 C 0.04 2.14 4.04 29.85 0.12 2.26 16 16 C -0.51 -28.96 7.65 25.60 0.20 -28.76 16 17 H 0.07 3.60 5.68 -2.91 -0.02 3.59 16 18 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 19 N -0.94 -58.41 13.29 21.45 0.28 -58.12 16 20 Si 0.96 44.92 29.54 68.60 2.03 46.95 16 21 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 22 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 23 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 24 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.04 0.92 7.45 -2.38 -0.02 0.91 16 26 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.14 0.98 8.09 -2.39 -0.02 0.96 16 28 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.26 1.73 8.06 -2.91 -0.02 1.70 16 30 H 0.23 4.26 8.06 -2.91 -0.02 4.24 16 31 H 0.33 8.73 5.79 -89.69 -0.52 8.21 16 32 H 0.00 -0.07 8.06 -2.39 -0.02 -0.09 16 33 H 0.06 2.24 7.44 -2.39 -0.02 2.22 16 34 H 0.07 2.24 7.60 -2.39 -0.02 2.22 16 35 H 0.04 1.58 6.62 -2.39 -0.02 1.56 16 36 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 37 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.05 2.08 6.62 -2.39 -0.02 2.06 16 39 H 0.06 1.94 6.57 -2.39 -0.02 1.92 16 40 H -0.02 -1.46 8.14 -2.39 -0.02 -1.48 16 41 H -0.01 -0.85 8.14 -2.38 -0.02 -0.86 16 42 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -73.35 337.48 4.20 -69.14 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: 0.47 Total: 12.52 kcal Atomic # 6 Polarization: -24.43 SS G_CDS: 8.23 Total: -16.20 kcal Atomic # 7 Polarization: -105.88 SS G_CDS: -6.53 Total: -112.41 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -73.35 4.20 -69.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595052221.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.064 kcal (2) G-P(sol) polarization free energy of solvation -73.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds