Wall clock time and date at job start Mon Mar 30 2020 00:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46796 * 2 1 4 4 C 1.52998 * 109.47067 * 240.00284 * 2 1 3 5 5 C 1.53002 * 109.47387 * 120.00041 * 2 1 3 6 6 N 1.46897 * 109.47083 * 77.56531 * 5 2 1 7 7 C 1.46903 * 110.99749 * 82.71146 * 6 5 2 8 8 C 1.50703 * 109.46964 * 71.00068 * 7 6 5 9 9 H 1.08007 * 119.99702 * 359.97438 * 8 7 6 10 10 C 1.37870 * 119.99966 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00151 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 120.00056 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.46934 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47444 * 119.99803 * 12 10 8 15 15 H 1.48502 * 109.47325 * 239.99778 * 12 10 8 16 16 C 1.46905 * 110.99982 * 318.76033 * 6 5 2 17 17 C 1.52990 * 109.47319 * 291.65473 * 16 6 5 18 18 C 1.50696 * 109.47467 * 185.18062 * 17 16 6 19 19 C 1.35356 * 126.91003 * 274.96030 * 18 17 16 20 20 N 1.33769 * 106.49557 * 180.02562 * 19 18 17 21 21 N 1.28634 * 108.88521 * 359.97438 * 20 19 18 22 22 N 1.28714 * 110.18167 * 0.02562 * 21 20 19 23 23 H 0.96994 * 125.87265 * 180.02562 * 22 21 20 24 24 H 1.09005 * 109.47286 * 294.37343 * 1 2 3 25 25 H 1.08996 * 109.47620 * 54.37522 * 1 2 3 26 26 H 1.09001 * 109.46983 * 174.37781 * 1 2 3 27 27 H 1.09000 * 109.46974 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47709 * 299.99777 * 3 2 1 29 29 H 1.09003 * 109.47223 * 60.00237 * 3 2 1 30 30 H 1.08997 * 109.47285 * 306.30336 * 4 2 1 31 31 H 1.08999 * 109.47146 * 66.30854 * 4 2 1 32 32 H 1.08998 * 109.47240 * 186.30263 * 4 2 1 33 33 H 1.09003 * 109.46786 * 317.56698 * 5 2 1 34 34 H 1.08999 * 109.47054 * 197.56728 * 5 2 1 35 35 H 1.09004 * 109.46761 * 190.99209 * 7 6 5 36 36 H 1.08996 * 109.47235 * 310.99678 * 7 6 5 37 37 H 0.97003 * 119.99877 * 180.02562 * 11 10 8 38 38 H 1.09002 * 109.46730 * 171.64975 * 16 6 5 39 39 H 1.09003 * 109.46689 * 51.65863 * 16 6 5 40 40 H 1.09005 * 109.46887 * 65.17941 * 17 16 6 41 41 H 1.08998 * 109.47404 * 305.18114 * 17 16 6 42 42 H 1.08000 * 126.75255 * 0.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2492 6 7 1.9221 -2.1731 1.0589 7 6 3.0659 -2.6993 0.3020 8 6 4.3009 -2.6579 1.1646 9 1 4.2421 -2.2782 2.1740 10 6 5.5061 -3.1038 0.6649 11 7 5.5778 -3.5657 -0.5643 12 14 7.0371 -3.0518 1.7339 13 1 6.6923 -2.4921 3.0655 14 1 7.5732 -4.4268 1.8981 15 1 8.0631 -2.1944 1.0877 16 6 0.6536 -2.5166 0.4025 17 6 -0.5081 -2.2294 1.3558 18 6 -1.7972 -2.6994 0.7328 19 6 -2.5790 -2.0133 -0.1333 20 7 -3.6146 -2.8092 -0.4226 21 7 -3.4824 -3.9150 0.2212 22 7 -2.4062 -3.8921 0.9268 23 1 -2.0863 -4.6071 1.4988 24 1 -0.3634 0.4241 0.9361 25 1 -0.3634 0.5985 -0.8353 26 1 -0.3633 -1.0227 -0.1007 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9564 0.8900 30 1 1.5875 -1.7111 -1.3075 31 1 1.7718 -0.1463 -2.1356 32 1 3.1241 -0.8199 -1.1947 33 1 1.4460 -0.4184 2.1116 34 1 3.0849 -0.4606 1.4181 35 1 2.8634 -3.7289 0.0067 36 1 3.2238 -2.0904 -0.5881 37 1 6.4256 -3.8797 -0.9158 38 1 0.6552 -3.5746 0.1400 39 1 0.5384 -1.9183 -0.5013 40 1 -0.5658 -1.1576 1.5456 41 1 -0.3455 -2.7566 2.2959 42 1 -2.4017 -1.0189 -0.5155 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595329263.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:54 Heat of formation + Delta-G solvation = 151.085707 kcal Electronic energy + Delta-G solvation = -21542.426959 eV Core-core repulsion = 18562.286261 eV Total energy + Delta-G solvation = -2980.140699 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.31958 -39.96575 -34.29267 -33.84783 -33.16628 -32.09980 -29.31056 -27.72346 -26.67752 -26.58658 -25.12632 -23.09755 -22.72048 -21.48606 -20.29372 -18.52920 -18.18088 -16.50657 -16.01908 -15.79089 -15.25435 -14.63226 -14.43212 -14.13167 -13.94735 -13.51057 -13.12496 -12.86975 -12.41066 -12.06782 -11.98264 -11.72261 -11.33852 -11.16437 -11.06465 -10.99707 -10.97591 -10.78801 -10.73585 -10.55745 -10.39790 -10.32252 -10.02068 -9.80579 -9.63874 -9.30113 -8.99086 -8.43952 -7.04963 -6.05098 -4.05085 1.57353 2.55270 2.76415 3.27485 3.35845 3.39780 4.35211 4.47804 4.71529 4.90757 5.08770 5.15215 5.19789 5.30115 5.32057 5.37532 5.41029 5.63392 5.77256 5.83001 5.86815 5.92494 6.03147 6.10064 6.13753 6.18166 6.20831 6.27455 6.36505 6.38673 6.55898 6.66358 6.80537 6.83272 6.86769 7.23286 7.43768 7.78641 8.07144 8.17720 8.44637 8.52011 9.02294 9.58211 11.04984 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.022444 B = 0.005374 C = 0.004710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.267158 B = 5208.945770 C = 5943.325945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.098 4.098 3 C -0.135 4.135 4 C -0.165 4.165 5 C 0.068 3.932 6 N -0.529 5.529 7 C 0.161 3.839 8 C -0.502 4.502 9 H 0.061 0.939 10 C 0.055 3.945 11 N -0.899 5.899 12 Si 0.893 3.107 13 H -0.273 1.273 14 H -0.285 1.285 15 H -0.286 1.286 16 C 0.021 3.979 17 C -0.069 4.069 18 C 0.009 3.991 19 C -0.058 4.058 20 N -0.268 5.268 21 N -0.092 5.092 22 N -0.390 5.390 23 H 0.448 0.552 24 H 0.054 0.946 25 H 0.045 0.955 26 H 0.100 0.900 27 H 0.056 0.944 28 H 0.046 0.954 29 H 0.049 0.951 30 H 0.072 0.928 31 H 0.039 0.961 32 H 0.083 0.917 33 H 0.055 0.945 34 H 0.083 0.917 35 H 0.021 0.979 36 H 0.034 0.966 37 H 0.260 0.740 38 H 0.060 0.940 39 H 0.082 0.918 40 H 0.111 0.889 41 H 0.082 0.918 42 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.067 5.702 2.331 12.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.099 4.099 3 C -0.193 4.193 4 C -0.221 4.221 5 C -0.061 4.061 6 N -0.251 5.251 7 C 0.036 3.964 8 C -0.541 4.541 9 H 0.079 0.921 10 C -0.146 4.146 11 N -0.539 5.539 12 Si 0.721 3.279 13 H -0.197 1.197 14 H -0.211 1.211 15 H -0.212 1.212 16 C -0.108 4.108 17 C -0.108 4.108 18 C -0.126 4.126 19 C -0.215 4.215 20 N -0.135 5.135 21 N -0.072 5.072 22 N -0.110 5.110 23 H 0.293 0.707 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.118 0.882 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.058 0.942 32 H 0.101 0.899 33 H 0.073 0.927 34 H 0.102 0.898 35 H 0.039 0.961 36 H 0.051 0.949 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.098 0.902 40 H 0.128 0.872 41 H 0.101 0.899 42 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -12.237 4.654 2.172 13.271 hybrid contribution 2.138 0.461 0.420 2.227 sum -10.099 5.114 2.591 11.613 Atomic orbital electron populations 1.23333 0.96052 1.04363 1.00783 1.21163 0.95041 0.95984 0.97733 1.21809 1.01288 0.95519 1.00703 1.22707 1.03288 1.00256 0.95814 1.22232 1.01951 0.87685 0.94183 1.62292 1.01620 1.11001 1.50235 1.20475 0.86546 0.95337 0.94016 1.21201 0.92230 1.40982 0.99662 0.92064 1.24948 0.98947 0.95649 0.95057 1.69955 1.25817 1.43163 1.15000 0.86517 0.83080 0.77616 0.80655 1.19726 1.21148 1.21181 1.23041 0.90130 1.01138 0.96453 1.20820 0.87069 1.03843 0.99095 1.22508 0.99684 0.87460 1.02901 1.23459 0.93593 1.02612 1.01830 1.75051 1.21906 0.98270 1.18313 1.78239 1.03959 1.18121 1.06897 1.45138 1.17307 1.14867 1.33716 0.70681 0.92722 0.93567 0.88207 0.92474 0.93449 0.93165 0.90945 0.94192 0.89861 0.92707 0.89838 0.96052 0.94851 0.93059 0.92165 0.90154 0.87163 0.89923 0.79399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.22 5.86 37.16 0.22 -2.00 16 2 C -0.10 -1.39 0.77 -154.51 -0.12 -1.51 16 3 C -0.14 -1.77 8.40 37.16 0.31 -1.46 16 4 C -0.16 -2.70 6.54 37.16 0.24 -2.45 16 5 C 0.07 1.14 4.60 -3.82 -0.02 1.12 16 6 N -0.53 -9.85 4.65 -236.07 -1.10 -10.94 16 7 C 0.16 3.77 4.11 -4.97 -0.02 3.75 16 8 C -0.50 -13.23 8.29 -34.44 -0.29 -13.51 16 9 H 0.06 1.62 7.68 -52.48 -0.40 1.22 16 10 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 11 N -0.90 -25.63 13.29 55.43 0.74 -24.89 16 12 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 13 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 14 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 15 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 16 C 0.02 0.31 3.75 -3.83 -0.01 0.30 16 17 C -0.07 -0.82 4.75 -27.89 -0.13 -0.95 16 18 C 0.01 0.11 6.46 -82.09 -0.53 -0.42 16 19 C -0.06 -0.73 11.13 -17.74 -0.20 -0.93 16 20 N -0.27 -3.98 12.41 30.24 0.38 -3.61 16 21 N -0.09 -1.30 13.38 60.35 0.81 -0.49 16 22 N -0.39 -4.45 6.98 33.54 0.23 -4.21 16 23 H 0.45 3.67 8.96 -190.41 -1.71 1.96 16 24 H 0.05 0.58 6.98 -51.93 -0.36 0.21 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.10 1.17 1.16 -51.93 -0.06 1.11 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 1.24 4.04 -51.93 -0.21 1.03 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.08 1.64 6.14 -51.93 -0.32 1.32 16 33 H 0.05 0.82 7.43 -51.93 -0.39 0.43 16 34 H 0.08 1.61 6.84 -51.93 -0.36 1.26 16 35 H 0.02 0.56 7.80 -51.93 -0.40 0.15 16 36 H 0.03 0.81 3.48 -51.93 -0.18 0.63 16 37 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 38 H 0.06 0.99 7.82 -51.93 -0.41 0.58 16 39 H 0.08 1.20 2.29 -51.93 -0.12 1.08 16 40 H 0.11 1.22 4.16 -51.93 -0.22 1.00 16 41 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.19 1.93 7.01 -52.49 -0.37 1.56 16 LS Contribution 310.60 15.07 4.68 4.68 Total: -1.00 -29.82 310.60 -7.09 -36.91 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -7.17 Total: 3.29 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: -0.64 Total: -16.67 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: 1.06 Total: -44.15 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.82 -7.09 -36.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595329263.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.998 kcal (2) G-P(sol) polarization free energy of solvation -29.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds