Wall clock time and date at job start Mon Mar 30 2020 00:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46796 * 2 1 4 4 C 1.52998 * 109.47067 * 240.00284 * 2 1 3 5 5 C 1.53002 * 109.47387 * 120.00041 * 2 1 3 6 6 N 1.46897 * 109.47083 * 77.56531 * 5 2 1 7 7 C 1.46903 * 110.99749 * 82.71146 * 6 5 2 8 8 C 1.50703 * 109.46964 * 71.00068 * 7 6 5 9 9 H 1.08007 * 119.99702 * 359.97438 * 8 7 6 10 10 C 1.37870 * 119.99966 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00151 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 120.00056 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.46934 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47444 * 119.99803 * 12 10 8 15 15 H 1.48502 * 109.47325 * 239.99778 * 12 10 8 16 16 C 1.46905 * 110.99982 * 318.76033 * 6 5 2 17 17 C 1.52990 * 109.47319 * 291.65473 * 16 6 5 18 18 C 1.50696 * 109.47467 * 185.18062 * 17 16 6 19 19 C 1.35356 * 126.91003 * 274.96030 * 18 17 16 20 20 N 1.33769 * 106.49557 * 180.02562 * 19 18 17 21 21 N 1.28634 * 108.88521 * 359.97438 * 20 19 18 22 22 N 1.28714 * 110.18167 * 0.02562 * 21 20 19 23 23 H 0.96994 * 125.87265 * 180.02562 * 22 21 20 24 24 H 1.09005 * 109.47286 * 294.37343 * 1 2 3 25 25 H 1.08996 * 109.47620 * 54.37522 * 1 2 3 26 26 H 1.09001 * 109.46983 * 174.37781 * 1 2 3 27 27 H 1.09000 * 109.46974 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47709 * 299.99777 * 3 2 1 29 29 H 1.09003 * 109.47223 * 60.00237 * 3 2 1 30 30 H 1.08997 * 109.47285 * 306.30336 * 4 2 1 31 31 H 1.08999 * 109.47146 * 66.30854 * 4 2 1 32 32 H 1.08998 * 109.47240 * 186.30263 * 4 2 1 33 33 H 1.09003 * 109.46786 * 317.56698 * 5 2 1 34 34 H 1.08999 * 109.47054 * 197.56728 * 5 2 1 35 35 H 1.09004 * 109.46761 * 190.99209 * 7 6 5 36 36 H 1.08996 * 109.47235 * 310.99678 * 7 6 5 37 37 H 0.97003 * 119.99877 * 180.02562 * 11 10 8 38 38 H 1.09002 * 109.46730 * 171.64975 * 16 6 5 39 39 H 1.09003 * 109.46689 * 51.65863 * 16 6 5 40 40 H 1.09005 * 109.46887 * 65.17941 * 17 16 6 41 41 H 1.08998 * 109.47404 * 305.18114 * 17 16 6 42 42 H 1.08000 * 126.75255 * 0.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2492 6 7 1.9221 -2.1731 1.0589 7 6 3.0659 -2.6993 0.3020 8 6 4.3009 -2.6579 1.1646 9 1 4.2421 -2.2782 2.1740 10 6 5.5061 -3.1038 0.6649 11 7 5.5778 -3.5657 -0.5643 12 14 7.0371 -3.0518 1.7339 13 1 6.6923 -2.4921 3.0655 14 1 7.5732 -4.4268 1.8981 15 1 8.0631 -2.1944 1.0877 16 6 0.6536 -2.5166 0.4025 17 6 -0.5081 -2.2294 1.3558 18 6 -1.7972 -2.6994 0.7328 19 6 -2.5790 -2.0133 -0.1333 20 7 -3.6146 -2.8092 -0.4226 21 7 -3.4824 -3.9150 0.2212 22 7 -2.4062 -3.8921 0.9268 23 1 -2.0863 -4.6071 1.4988 24 1 -0.3634 0.4241 0.9361 25 1 -0.3634 0.5985 -0.8353 26 1 -0.3633 -1.0227 -0.1007 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9564 0.8900 30 1 1.5875 -1.7111 -1.3075 31 1 1.7718 -0.1463 -2.1356 32 1 3.1241 -0.8199 -1.1947 33 1 1.4460 -0.4184 2.1116 34 1 3.0849 -0.4606 1.4181 35 1 2.8634 -3.7289 0.0067 36 1 3.2238 -2.0904 -0.5881 37 1 6.4256 -3.8797 -0.9158 38 1 0.6552 -3.5746 0.1400 39 1 0.5384 -1.9183 -0.5013 40 1 -0.5658 -1.1576 1.5456 41 1 -0.3455 -2.7566 2.2959 42 1 -2.4017 -1.0189 -0.5155 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595329263.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:53 Heat of formation + Delta-G solvation = 130.113852 kcal Electronic energy + Delta-G solvation = -21543.336367 eV Core-core repulsion = 18562.286261 eV Total energy + Delta-G solvation = -2981.050106 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.30721 -41.25623 -35.53084 -35.37232 -34.20761 -33.78849 -30.52828 -29.15360 -28.22581 -27.68756 -26.41978 -24.51090 -23.87215 -22.61953 -21.72333 -19.71209 -19.18878 -18.43552 -17.12713 -16.97835 -16.78988 -16.23441 -15.53827 -15.33639 -15.23679 -14.93685 -14.28360 -14.21827 -13.96157 -13.40102 -13.09924 -12.93772 -12.80579 -12.64609 -12.53166 -12.35495 -12.20331 -12.17007 -12.07616 -11.95654 -11.62067 -11.57094 -11.42018 -11.28546 -11.04490 -10.92852 -10.49161 -10.08095 -8.56820 -8.11927 -6.19921 0.59674 1.40206 1.42291 1.53873 1.55963 1.90235 2.43134 3.19202 3.31283 3.69550 3.83968 3.98779 3.99896 4.11628 4.15865 4.24849 4.36732 4.54988 4.67686 4.68906 4.73255 4.80303 4.93905 4.98063 5.01539 5.07644 5.14949 5.19212 5.21782 5.25453 5.36141 5.39116 5.44765 5.55946 5.63578 5.64902 5.75744 5.99359 6.19342 6.51835 6.78120 6.97716 7.45065 7.47845 8.96272 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.022444 B = 0.005374 C = 0.004710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.267158 B = 5208.945770 C = 5943.325945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.093 4.093 3 C -0.133 4.133 4 C -0.159 4.159 5 C 0.068 3.932 6 N -0.535 5.535 7 C 0.172 3.828 8 C -0.510 4.510 9 H 0.057 0.943 10 C 0.002 3.998 11 N -0.935 5.935 12 Si 0.957 3.043 13 H -0.264 1.264 14 H -0.284 1.284 15 H -0.282 1.282 16 C 0.023 3.977 17 C -0.052 4.052 18 C 0.013 3.987 19 C -0.056 4.056 20 N -0.298 5.298 21 N -0.112 5.112 22 N -0.377 5.377 23 H 0.460 0.540 24 H 0.077 0.923 25 H 0.062 0.938 26 H 0.097 0.903 27 H 0.035 0.965 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.041 0.959 33 H 0.082 0.918 34 H 0.050 0.950 35 H -0.015 1.015 36 H 0.028 0.972 37 H 0.260 0.740 38 H 0.040 0.960 39 H 0.089 0.911 40 H 0.129 0.871 41 H 0.088 0.912 42 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.229 7.319 3.497 14.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.094 4.094 3 C -0.190 4.190 4 C -0.215 4.215 5 C -0.060 4.060 6 N -0.258 5.258 7 C 0.047 3.953 8 C -0.548 4.548 9 H 0.075 0.925 10 C -0.195 4.195 11 N -0.577 5.577 12 Si 0.783 3.217 13 H -0.188 1.188 14 H -0.210 1.210 15 H -0.208 1.208 16 C -0.105 4.105 17 C -0.092 4.092 18 C -0.123 4.123 19 C -0.214 4.214 20 N -0.164 5.164 21 N -0.092 5.092 22 N -0.100 5.100 23 H 0.308 0.692 24 H 0.096 0.904 25 H 0.081 0.919 26 H 0.115 0.885 27 H 0.055 0.945 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.059 0.941 33 H 0.101 0.899 34 H 0.068 0.932 35 H 0.003 0.997 36 H 0.045 0.955 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.106 0.894 40 H 0.147 0.853 41 H 0.107 0.893 42 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -13.424 6.263 3.358 15.189 hybrid contribution 2.496 -0.040 0.042 2.497 sum -10.928 6.223 3.400 13.027 Atomic orbital electron populations 1.23260 0.93236 1.04744 1.02842 1.21103 0.97195 0.96075 0.95073 1.21781 1.00043 0.94799 1.02413 1.22588 1.00379 1.00449 0.98098 1.22250 1.00697 0.86548 0.96484 1.62162 1.01405 1.12502 1.49740 1.20163 0.87811 0.93408 0.93960 1.21539 0.93537 1.40107 0.99668 0.92484 1.25751 1.02046 0.95505 0.96209 1.70077 1.26503 1.44423 1.16664 0.85517 0.79408 0.77535 0.79258 1.18829 1.20996 1.20778 1.23076 0.89686 1.00106 0.97658 1.20642 0.85325 1.05059 0.98133 1.22453 0.99481 0.87463 1.02873 1.23897 0.92813 1.03350 1.01328 1.75036 1.23223 0.98918 1.19271 1.78203 1.05009 1.18316 1.07674 1.45189 1.16584 1.15179 1.33063 0.69195 0.90386 0.91886 0.88546 0.94541 0.91998 0.91164 0.92050 0.92421 0.94068 0.89935 0.93171 0.99665 0.95513 0.93094 0.94120 0.89434 0.85317 0.89302 0.77148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.57 5.86 71.98 0.42 -3.15 16 2 C -0.09 -2.47 0.77 -52.18 -0.04 -2.51 16 3 C -0.13 -3.16 8.40 71.98 0.60 -2.55 16 4 C -0.16 -5.19 6.54 71.98 0.47 -4.72 16 5 C 0.07 2.20 4.60 86.30 0.40 2.59 16 6 N -0.54 -19.88 4.65 -900.78 -4.19 -24.07 16 7 C 0.17 8.41 4.11 85.56 0.35 8.77 16 8 C -0.51 -27.57 8.29 25.60 0.21 -27.36 16 9 H 0.06 3.06 7.68 -2.91 -0.02 3.04 16 10 C 0.00 0.12 5.46 84.65 0.46 0.58 16 11 N -0.94 -54.98 13.29 21.44 0.28 -54.70 16 12 Si 0.96 43.57 29.54 68.60 2.03 45.60 16 13 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 14 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 15 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 16 C 0.02 0.67 3.75 86.30 0.32 0.99 16 17 C -0.05 -1.09 4.75 29.84 0.14 -0.95 16 18 C 0.01 0.27 6.46 41.36 0.27 0.54 16 19 C -0.06 -1.26 11.13 83.73 0.93 -0.33 16 20 N -0.30 -8.37 12.41 -58.25 -0.72 -9.10 16 21 N -0.11 -3.02 13.38 37.02 0.50 -2.53 16 22 N -0.38 -7.97 6.98 -47.79 -0.33 -8.30 16 23 H 0.46 6.82 8.96 -219.97 -1.97 4.85 16 24 H 0.08 1.20 6.98 -2.38 -0.02 1.19 16 25 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.10 1.93 1.16 -2.39 0.00 1.92 16 27 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.06 2.12 4.04 -2.39 -0.01 2.11 16 31 H 0.06 1.63 8.14 -2.39 -0.02 1.62 16 32 H 0.04 1.69 6.14 -2.39 -0.01 1.67 16 33 H 0.08 2.20 7.43 -2.39 -0.02 2.18 16 34 H 0.05 1.95 6.84 -2.39 -0.02 1.93 16 35 H -0.01 -0.82 7.80 -2.39 -0.02 -0.84 16 36 H 0.03 1.38 3.48 -2.39 -0.01 1.37 16 37 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 38 H 0.04 1.34 7.82 -2.39 -0.02 1.33 16 39 H 0.09 2.50 2.29 -2.39 -0.01 2.50 16 40 H 0.13 2.27 4.16 -2.38 -0.01 2.26 16 41 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.21 3.51 7.01 -2.91 -0.02 3.49 16 Total: -1.00 -66.33 310.60 1.19 -65.14 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -0.92 Total: 16.07 kcal Atomic # 6 Polarization: -32.66 SS G_CDS: 4.54 Total: -28.11 kcal Atomic # 7 Polarization: -94.23 SS G_CDS: -4.46 Total: -98.69 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -66.33 1.19 -65.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595329263.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.252 kcal (2) G-P(sol) polarization free energy of solvation -66.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds