Wall clock time and date at job start Mon Mar 30 2020 00:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00230 * 2 1 4 4 H 1.48507 * 109.47021 * 269.99734 * 3 2 1 5 5 H 1.48500 * 109.47038 * 29.99352 * 3 2 1 6 6 H 1.48500 * 109.47481 * 149.99700 * 3 2 1 7 7 C 1.37878 * 119.99833 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00104 * 0.02562 * 7 2 1 9 9 C 1.50708 * 119.99798 * 180.02562 * 7 2 1 10 10 N 1.46897 * 109.46956 * 179.97438 * 9 7 2 11 11 C 1.46959 * 111.00045 * 169.99853 * 10 9 7 12 12 C 1.53046 * 109.36519 * 183.19183 * 11 10 9 13 13 N 1.46959 * 109.36367 * 301.59786 * 12 11 10 14 14 C 1.46900 * 110.99798 * 183.18629 * 13 12 11 15 15 C 1.53007 * 109.46815 * 169.99718 * 14 13 12 16 16 C 1.53001 * 109.46818 * 180.02562 * 15 14 13 17 17 C 1.53006 * 109.47082 * 180.02562 * 16 15 14 18 18 C 1.53780 * 113.61448 * 274.14305 * 17 16 15 19 19 C 1.53948 * 87.01697 * 220.04552 * 18 17 16 20 20 C 1.53780 * 87.11633 * 25.36271 * 19 18 17 21 21 C 1.46962 * 110.87984 * 59.32466 * 13 12 11 22 22 C 1.46960 * 111.00462 * 293.80205 * 10 9 7 23 23 H 0.96999 * 119.99854 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47183 * 60.00078 * 9 7 2 25 25 H 1.09000 * 109.46909 * 300.00106 * 9 7 2 26 26 H 1.09002 * 109.48565 * 63.22058 * 11 10 9 27 27 H 1.08997 * 109.50635 * 303.16868 * 11 10 9 28 28 H 1.08998 * 109.48825 * 181.63443 * 12 11 10 29 29 H 1.08998 * 109.49176 * 61.56916 * 12 11 10 30 30 H 1.09008 * 109.46827 * 50.00780 * 14 13 12 31 31 H 1.08996 * 109.47958 * 290.00060 * 14 13 12 32 32 H 1.08999 * 109.46732 * 60.01043 * 15 14 13 33 33 H 1.09002 * 109.47596 * 300.00312 * 15 14 13 34 34 H 1.09006 * 109.47283 * 60.00721 * 16 15 14 35 35 H 1.08996 * 109.47913 * 300.00316 * 16 15 14 36 36 H 1.09002 * 112.84791 * 45.33622 * 17 16 15 37 37 H 1.09000 * 113.61461 * 334.56153 * 18 17 16 38 38 H 1.08995 * 113.61894 * 105.46890 * 18 17 16 39 39 H 1.09005 * 113.54029 * 270.80899 * 19 18 17 40 40 H 1.09006 * 113.66851 * 139.93263 * 19 18 17 41 41 H 1.08994 * 113.61871 * 220.09800 * 20 19 18 42 42 H 1.09002 * 113.69172 * 89.19391 * 20 19 18 43 43 H 1.08993 * 109.48890 * 60.64479 * 21 13 12 44 44 H 1.09001 * 109.48678 * 180.71370 * 21 13 12 45 45 H 1.09004 * 109.47975 * 296.77710 * 22 10 9 46 46 H 1.08995 * 109.48740 * 56.83778 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5468 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 7 4.0012 -2.5790 0.0022 11 6 5.4507 -2.6254 -0.2354 12 6 5.9070 -4.0846 -0.3060 13 7 5.5601 -4.7648 0.9496 14 6 6.0497 -6.1498 0.9506 15 6 5.8949 -6.7445 2.3519 16 6 6.4054 -8.1868 2.3530 17 6 6.2500 -8.7817 3.7541 18 6 7.4340 -8.4778 4.6872 19 6 7.2956 -9.9224 5.2011 20 6 6.6576 -10.2617 3.8437 21 6 4.1106 -4.7186 1.1872 22 6 3.6543 -3.2594 1.2578 23 1 -0.4850 0.8401 -0.0004 24 1 3.8746 -0.6800 0.8912 25 1 3.8752 -0.6804 -0.8888 26 1 5.9692 -2.1212 0.5801 27 1 5.6814 -2.1264 -1.1766 28 1 6.9864 -4.1213 -0.4533 29 1 5.4090 -4.5815 -1.1385 30 1 7.1014 -6.1636 0.6643 31 1 5.4718 -6.7401 0.2395 32 1 4.8432 -6.7307 2.6381 33 1 6.4728 -6.1542 3.0630 34 1 7.4571 -8.2002 2.0669 35 1 5.8278 -8.7773 1.6419 36 1 5.2778 -8.5688 4.1988 37 1 8.3689 -8.2899 4.1593 38 1 7.2132 -7.7222 5.4411 39 1 6.6100 -10.0213 6.0428 40 1 8.2506 -10.4197 5.3712 41 1 5.8109 -10.9440 3.9176 42 1 7.3788 -10.5627 3.0838 43 1 3.5921 -5.2227 0.3718 44 1 3.8803 -5.2175 2.1286 45 1 4.1525 -2.7624 2.0903 46 1 2.5750 -3.2225 1.4051 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595391376.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:03 Heat of formation + Delta-G solvation = 14.710753 kcal Electronic energy + Delta-G solvation = -20357.826606 eV Core-core repulsion = 17475.312589 eV Total energy + Delta-G solvation = -2882.514017 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.32252 -38.71744 -35.70420 -33.19442 -32.15235 -30.45290 -28.95086 -26.98408 -25.85615 -24.70666 -23.23734 -22.53865 -21.09933 -20.74974 -19.58212 -19.19605 -16.78012 -16.06939 -15.74917 -15.34100 -14.93613 -14.49586 -14.37134 -14.16470 -14.03027 -13.59424 -13.39111 -12.75494 -12.69915 -12.69831 -12.28033 -12.04151 -11.89567 -11.56757 -11.44856 -11.30401 -10.93246 -10.90832 -10.76220 -10.70767 -10.49051 -10.37360 -10.27171 -10.21691 -9.93023 -9.76709 -9.24413 -8.55467 -8.11026 -7.33005 -6.04051 -4.01213 3.29723 3.37045 3.39865 4.03339 4.37627 4.42334 4.43509 4.49334 4.61965 4.80709 4.92803 5.06304 5.25847 5.28416 5.29919 5.38369 5.42802 5.48534 5.55645 5.58523 5.61201 5.63070 5.69549 5.72139 5.76335 5.80112 5.87328 5.90765 6.02265 6.04853 6.13089 6.21562 6.27003 6.32237 6.37491 6.55300 6.67233 6.86823 7.00188 7.29053 7.32111 7.61911 7.94342 8.08458 8.67888 9.04003 9.57950 11.09069 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.037459 B = 0.003048 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.313583 B = 9185.184586 C = 9466.728611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.508 4.508 8 H 0.080 0.920 9 C 0.162 3.838 10 N -0.530 5.530 11 C 0.054 3.946 12 C 0.061 3.939 13 N -0.541 5.541 14 C 0.056 3.944 15 C -0.114 4.114 16 C -0.108 4.108 17 C -0.109 4.109 18 C -0.137 4.137 19 C -0.145 4.145 20 C -0.140 4.140 21 C 0.056 3.944 22 C 0.067 3.933 23 H 0.263 0.737 24 H -0.011 1.011 25 H 0.023 0.977 26 H 0.030 0.970 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.039 0.961 30 H 0.068 0.932 31 H 0.030 0.970 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.079 0.921 43 H 0.038 0.962 44 H 0.073 0.927 45 H 0.028 0.972 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.577 -17.416 6.469 24.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.703 3.297 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.547 4.547 8 H 0.098 0.902 9 C 0.036 3.964 10 N -0.255 5.255 11 C -0.075 4.075 12 C -0.067 4.067 13 N -0.266 5.266 14 C -0.072 4.072 15 C -0.152 4.152 16 C -0.146 4.146 17 C -0.128 4.128 18 C -0.175 4.175 19 C -0.182 4.182 20 C -0.177 4.177 21 C -0.071 4.071 22 C -0.062 4.062 23 H 0.073 0.927 24 H 0.007 0.993 25 H 0.041 0.959 26 H 0.049 0.951 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.057 0.943 30 H 0.086 0.914 31 H 0.048 0.952 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.107 0.893 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.097 0.903 43 H 0.057 0.943 44 H 0.092 0.908 45 H 0.047 0.953 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 15.413 -17.277 6.461 24.038 hybrid contribution 0.359 0.991 -0.068 1.057 sum 15.772 -16.286 6.393 23.556 Atomic orbital electron populations 1.69897 1.06119 1.26819 1.51190 1.24903 0.94742 0.98871 0.94861 0.86857 0.80331 0.83984 0.78567 1.20173 1.21215 1.19247 1.21035 0.88745 0.94681 1.50211 0.90203 1.20155 0.97031 0.84152 0.95053 1.62098 1.10398 1.19068 1.33932 1.22110 0.90194 0.94868 1.00336 1.22120 0.99332 0.94983 0.90237 1.62190 1.14878 1.14850 1.34692 1.22088 0.99797 0.88594 0.96724 1.21578 1.01691 0.94923 0.97020 1.21535 1.01102 0.95857 0.96061 1.22550 0.98868 0.95465 0.95868 1.22998 0.98666 0.96664 0.99144 1.22847 1.00866 0.97218 0.97284 1.22948 1.00562 0.96645 0.97542 1.22274 0.86573 0.97942 1.00349 1.22029 1.01697 0.91819 0.90613 0.92686 0.99339 0.95858 0.95143 0.91069 0.91253 0.94299 0.91380 0.95193 0.91853 0.91234 0.92035 0.92090 0.89309 0.90207 0.91590 0.90379 0.91752 0.91744 0.90265 0.94329 0.90843 0.95335 0.89088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.78 13.96 55.43 0.77 -27.01 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.74 27.47 -169.99 -4.67 17.07 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 7 C -0.51 -14.61 9.03 -34.44 -0.31 -14.92 16 8 H 0.08 2.49 7.38 -52.49 -0.39 2.10 16 9 C 0.16 4.04 3.79 -4.97 -0.02 4.02 16 10 N -0.53 -11.49 4.70 -235.91 -1.11 -12.60 16 11 C 0.05 0.97 5.61 -3.77 -0.02 0.95 16 12 C 0.06 0.93 5.61 -3.77 -0.02 0.91 16 13 N -0.54 -8.05 4.71 -234.46 -1.10 -9.15 16 14 C 0.06 0.66 4.96 -3.82 -0.02 0.64 16 15 C -0.11 -1.19 5.14 -26.73 -0.14 -1.33 16 16 C -0.11 -0.92 5.04 -26.73 -0.13 -1.06 16 17 C -0.11 -0.88 3.64 -89.80 -0.33 -1.21 16 18 C -0.14 -1.06 7.65 -25.83 -0.20 -1.26 16 19 C -0.14 -1.02 8.09 -25.83 -0.21 -1.23 16 20 C -0.14 -1.01 7.65 -25.92 -0.20 -1.21 16 21 C 0.06 0.92 5.41 -3.77 -0.02 0.90 16 22 C 0.07 1.33 5.43 -3.77 -0.02 1.31 16 23 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 24 H -0.01 -0.28 7.18 -51.93 -0.37 -0.65 16 25 H 0.02 0.58 7.45 -51.93 -0.39 0.19 16 26 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 28 H 0.07 0.89 8.07 -51.93 -0.42 0.48 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.74 8.03 -51.92 -0.42 0.33 16 31 H 0.03 0.36 8.12 -51.93 -0.42 -0.06 16 32 H 0.06 0.70 6.49 -51.93 -0.34 0.36 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.50 7.88 -51.93 -0.41 0.10 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.08 0.60 7.92 -51.93 -0.41 0.19 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.55 8.10 -51.93 -0.42 0.13 16 43 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.07 1.07 6.34 -51.93 -0.33 0.74 16 45 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.09 1.99 6.79 -51.93 -0.35 1.64 16 LS Contribution 349.76 15.07 5.27 5.27 Total: -1.00 -30.28 349.76 -11.47 -41.75 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -8.90 Total: -3.73 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: -1.73 Total: -11.60 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: -1.44 Total: -48.76 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.07 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.28 -11.47 -41.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595391376.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.462 kcal (2) G-P(sol) polarization free energy of solvation -30.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds