Wall clock time and date at job start Mon Mar 30 2020 00:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00230 * 2 1 4 4 H 1.48507 * 109.47021 * 269.99734 * 3 2 1 5 5 H 1.48500 * 109.47038 * 29.99352 * 3 2 1 6 6 H 1.48500 * 109.47481 * 149.99700 * 3 2 1 7 7 C 1.37878 * 119.99833 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00104 * 0.02562 * 7 2 1 9 9 C 1.50708 * 119.99798 * 180.02562 * 7 2 1 10 10 N 1.46897 * 109.46956 * 179.97438 * 9 7 2 11 11 C 1.46959 * 111.00045 * 169.99853 * 10 9 7 12 12 C 1.53046 * 109.36519 * 183.19183 * 11 10 9 13 13 N 1.46959 * 109.36367 * 301.59786 * 12 11 10 14 14 C 1.46900 * 110.99798 * 183.18629 * 13 12 11 15 15 C 1.53007 * 109.46815 * 169.99718 * 14 13 12 16 16 C 1.53001 * 109.46818 * 180.02562 * 15 14 13 17 17 C 1.53006 * 109.47082 * 180.02562 * 16 15 14 18 18 C 1.53780 * 113.61448 * 274.14305 * 17 16 15 19 19 C 1.53948 * 87.01697 * 220.04552 * 18 17 16 20 20 C 1.53780 * 87.11633 * 25.36271 * 19 18 17 21 21 C 1.46962 * 110.87984 * 59.32466 * 13 12 11 22 22 C 1.46960 * 111.00462 * 293.80205 * 10 9 7 23 23 H 0.96999 * 119.99854 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47183 * 60.00078 * 9 7 2 25 25 H 1.09000 * 109.46909 * 300.00106 * 9 7 2 26 26 H 1.09002 * 109.48565 * 63.22058 * 11 10 9 27 27 H 1.08997 * 109.50635 * 303.16868 * 11 10 9 28 28 H 1.08998 * 109.48825 * 181.63443 * 12 11 10 29 29 H 1.08998 * 109.49176 * 61.56916 * 12 11 10 30 30 H 1.09008 * 109.46827 * 50.00780 * 14 13 12 31 31 H 1.08996 * 109.47958 * 290.00060 * 14 13 12 32 32 H 1.08999 * 109.46732 * 60.01043 * 15 14 13 33 33 H 1.09002 * 109.47596 * 300.00312 * 15 14 13 34 34 H 1.09006 * 109.47283 * 60.00721 * 16 15 14 35 35 H 1.08996 * 109.47913 * 300.00316 * 16 15 14 36 36 H 1.09002 * 112.84791 * 45.33622 * 17 16 15 37 37 H 1.09000 * 113.61461 * 334.56153 * 18 17 16 38 38 H 1.08995 * 113.61894 * 105.46890 * 18 17 16 39 39 H 1.09005 * 113.54029 * 270.80899 * 19 18 17 40 40 H 1.09006 * 113.66851 * 139.93263 * 19 18 17 41 41 H 1.08994 * 113.61871 * 220.09800 * 20 19 18 42 42 H 1.09002 * 113.69172 * 89.19391 * 20 19 18 43 43 H 1.08993 * 109.48890 * 60.64479 * 21 13 12 44 44 H 1.09001 * 109.48678 * 180.71370 * 21 13 12 45 45 H 1.09004 * 109.47975 * 296.77710 * 22 10 9 46 46 H 1.08995 * 109.48740 * 56.83778 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5468 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 7 4.0012 -2.5790 0.0022 11 6 5.4507 -2.6254 -0.2354 12 6 5.9070 -4.0846 -0.3060 13 7 5.5601 -4.7648 0.9496 14 6 6.0497 -6.1498 0.9506 15 6 5.8949 -6.7445 2.3519 16 6 6.4054 -8.1868 2.3530 17 6 6.2500 -8.7817 3.7541 18 6 7.4340 -8.4778 4.6872 19 6 7.2956 -9.9224 5.2011 20 6 6.6576 -10.2617 3.8437 21 6 4.1106 -4.7186 1.1872 22 6 3.6543 -3.2594 1.2578 23 1 -0.4850 0.8401 -0.0004 24 1 3.8746 -0.6800 0.8912 25 1 3.8752 -0.6804 -0.8888 26 1 5.9692 -2.1212 0.5801 27 1 5.6814 -2.1264 -1.1766 28 1 6.9864 -4.1213 -0.4533 29 1 5.4090 -4.5815 -1.1385 30 1 7.1014 -6.1636 0.6643 31 1 5.4718 -6.7401 0.2395 32 1 4.8432 -6.7307 2.6381 33 1 6.4728 -6.1542 3.0630 34 1 7.4571 -8.2002 2.0669 35 1 5.8278 -8.7773 1.6419 36 1 5.2778 -8.5688 4.1988 37 1 8.3689 -8.2899 4.1593 38 1 7.2132 -7.7222 5.4411 39 1 6.6100 -10.0213 6.0428 40 1 8.2506 -10.4197 5.3712 41 1 5.8109 -10.9440 3.9176 42 1 7.3788 -10.5627 3.0838 43 1 3.5921 -5.2227 0.3718 44 1 3.8803 -5.2175 2.1286 45 1 4.1525 -2.7624 2.0903 46 1 2.5750 -3.2225 1.4051 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595391376.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:02 Heat of formation + Delta-G solvation = -4.397024 kcal Electronic energy + Delta-G solvation = -20358.655181 eV Core-core repulsion = 17475.312589 eV Total energy + Delta-G solvation = -2883.342592 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.33062 -39.69858 -37.09946 -34.82357 -33.70608 -31.85272 -30.54311 -28.29177 -26.47099 -26.02194 -24.66917 -23.54580 -22.78783 -21.69801 -20.65516 -20.17408 -18.95793 -17.29794 -16.59071 -16.43351 -16.21503 -15.89593 -15.74742 -15.44733 -15.28301 -14.99081 -14.87518 -14.41888 -13.70717 -13.54126 -13.44624 -13.26087 -13.05369 -12.94575 -12.71629 -12.41582 -12.26792 -12.18500 -12.13080 -11.93839 -11.85840 -11.65364 -11.41672 -11.31582 -11.26703 -10.92668 -10.79131 -10.78489 -9.32188 -9.04514 -8.29750 -6.33404 1.33959 1.35538 1.46551 2.33478 2.92248 3.02885 3.20960 3.73334 3.80258 3.86232 3.98923 4.03678 4.06393 4.17773 4.26716 4.34357 4.41714 4.48084 4.52921 4.61699 4.72575 4.77943 4.80195 4.81281 4.87522 4.89832 4.92906 4.95109 4.98873 5.01692 5.06931 5.11399 5.12425 5.16975 5.17734 5.34342 5.46416 5.51125 5.53036 5.69889 5.93473 6.05945 6.18986 6.35797 6.64077 6.72182 7.30321 8.86841 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.037459 B = 0.003048 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.313583 B = 9185.184586 C = 9466.728611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.008 3.992 3 Si 0.949 3.051 4 H -0.263 1.263 5 H -0.281 1.281 6 H -0.254 1.254 7 C -0.517 4.517 8 H 0.037 0.963 9 C 0.173 3.827 10 N -0.547 5.547 11 C 0.052 3.948 12 C 0.067 3.933 13 N -0.547 5.547 14 C 0.058 3.942 15 C -0.108 4.108 16 C -0.100 4.100 17 C -0.113 4.113 18 C -0.139 4.139 19 C -0.144 4.144 20 C -0.137 4.137 21 C 0.070 3.930 22 C 0.070 3.930 23 H 0.267 0.733 24 H -0.015 1.015 25 H 0.030 0.970 26 H 0.030 0.970 27 H 0.081 0.919 28 H 0.102 0.898 29 H 0.033 0.967 30 H 0.086 0.914 31 H 0.030 0.970 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.060 0.940 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.085 0.915 43 H 0.028 0.972 44 H 0.091 0.909 45 H 0.024 0.976 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.339 -17.764 6.446 26.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.190 4.190 3 Si 0.772 3.228 4 H -0.188 1.188 5 H -0.206 1.206 6 H -0.178 1.178 7 C -0.555 4.555 8 H 0.055 0.945 9 C 0.046 3.954 10 N -0.272 5.272 11 C -0.076 4.076 12 C -0.061 4.061 13 N -0.272 5.272 14 C -0.069 4.069 15 C -0.146 4.146 16 C -0.138 4.138 17 C -0.132 4.132 18 C -0.176 4.176 19 C -0.181 4.181 20 C -0.175 4.175 21 C -0.059 4.059 22 C -0.058 4.058 23 H 0.076 0.924 24 H 0.003 0.997 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.099 0.901 28 H 0.120 0.880 29 H 0.052 0.948 30 H 0.104 0.896 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.079 0.921 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.103 0.897 43 H 0.046 0.954 44 H 0.109 0.891 45 H 0.042 0.958 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 18.198 -17.655 6.438 26.159 hybrid contribution -0.539 1.008 -0.051 1.144 sum 17.659 -16.647 6.386 25.095 Atomic orbital electron populations 1.70050 1.08096 1.28161 1.52503 1.25858 0.95640 1.03178 0.94286 0.85688 0.79221 0.78523 0.79337 1.18793 1.20604 1.17758 1.21240 0.91002 0.93258 1.50036 0.94501 1.19914 0.94315 0.86321 0.94891 1.62024 1.13285 1.17136 1.34760 1.22242 0.87437 0.97256 1.00712 1.22117 1.01067 0.92870 0.90095 1.62206 1.13346 1.16938 1.34666 1.22174 1.00569 0.86654 0.97533 1.21512 1.01074 0.95984 0.95995 1.21471 1.01485 0.94481 0.96373 1.22553 0.98714 0.96257 0.95651 1.23018 0.98604 0.96994 0.99019 1.22854 1.01266 0.96723 0.97246 1.22951 1.00746 0.95958 0.97811 1.22078 0.87825 0.95022 1.00932 1.21940 0.99742 0.94219 0.89927 0.92369 0.99737 0.95212 0.95161 0.90089 0.88026 0.94849 0.89593 0.95175 0.92849 0.91781 0.91158 0.91994 0.90061 0.89824 0.92118 0.90284 0.91023 0.91611 0.89662 0.95385 0.89133 0.95798 0.92417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.01 13.96 21.45 0.30 -59.71 16 2 C 0.01 0.46 5.47 84.65 0.46 0.92 16 3 Si 0.95 44.77 27.47 68.60 1.88 46.65 16 4 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.25 -11.31 6.54 99.48 0.65 -10.65 16 7 C -0.52 -30.68 9.03 25.60 0.23 -30.44 16 8 H 0.04 2.44 7.38 -2.91 -0.02 2.41 16 9 C 0.17 8.59 3.79 85.56 0.32 8.92 16 10 N -0.55 -23.76 4.70 -900.27 -4.23 -27.99 16 11 C 0.05 1.77 5.61 86.31 0.48 2.25 16 12 C 0.07 1.85 5.61 86.31 0.48 2.33 16 13 N -0.55 -15.17 4.71 -895.71 -4.22 -19.38 16 14 C 0.06 1.22 4.96 86.31 0.43 1.65 16 15 C -0.11 -2.04 5.14 30.60 0.16 -1.88 16 16 C -0.10 -1.50 5.04 30.60 0.15 -1.35 16 17 C -0.11 -1.66 3.64 -10.27 -0.04 -1.69 16 18 C -0.14 -1.93 7.65 31.18 0.24 -1.69 16 19 C -0.14 -1.77 8.09 31.18 0.25 -1.52 16 20 C -0.14 -1.74 7.65 31.12 0.24 -1.50 16 21 C 0.07 2.24 5.41 86.31 0.47 2.71 16 22 C 0.07 2.86 5.43 86.31 0.47 3.33 16 23 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 24 H -0.02 -0.75 7.18 -2.38 -0.02 -0.77 16 25 H 0.03 1.44 7.45 -2.39 -0.02 1.42 16 26 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.08 2.58 8.07 -2.39 -0.02 2.56 16 28 H 0.10 2.21 8.07 -2.39 -0.02 2.19 16 29 H 0.03 0.97 8.14 -2.39 -0.02 0.96 16 30 H 0.09 1.55 8.03 -2.38 -0.02 1.53 16 31 H 0.03 0.65 8.12 -2.39 -0.02 0.64 16 32 H 0.05 1.11 6.49 -2.39 -0.02 1.10 16 33 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.07 0.95 7.88 -2.38 -0.02 0.93 16 35 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.08 1.09 7.92 -2.39 -0.02 1.07 16 38 H 0.06 0.89 8.14 -2.39 -0.02 0.88 16 39 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 40 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 41 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.08 0.98 8.10 -2.39 -0.02 0.96 16 43 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.09 2.58 6.34 -2.39 -0.02 2.57 16 45 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 46 H 0.06 2.69 6.79 -2.39 -0.02 2.67 16 Total: -1.00 -66.31 349.76 -1.07 -67.38 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: 0.84 Total: 11.02 kcal Atomic # 6 Polarization: -22.32 SS G_CDS: 4.35 Total: -17.97 kcal Atomic # 7 Polarization: -98.93 SS G_CDS: -8.15 Total: -107.08 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.88 Total: 46.65 kcal Total: -66.31 -1.07 -67.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595391376.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.985 kcal (2) G-P(sol) polarization free energy of solvation -66.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds