Wall clock time and date at job start Mon Mar 30 2020 00:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 120.00074 * 2 1 4 4 H 1.48500 * 109.47194 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47232 * 299.99978 * 3 2 1 6 6 H 1.48505 * 109.47012 * 60.00037 * 3 2 1 7 7 C 1.37877 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00492 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99938 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.53326 * 299.90188 * 9 7 2 11 11 C 1.53120 * 109.50132 * 59.99803 * 9 7 2 12 12 C 1.53123 * 109.21163 * 177.62791 * 11 9 7 13 13 C 1.53037 * 109.27398 * 302.31409 * 12 11 9 14 14 N 1.46848 * 109.52381 * 59.18254 * 13 12 11 15 15 C 1.46900 * 110.99918 * 174.15634 * 14 13 12 16 16 C 1.53006 * 109.47181 * 66.04184 * 15 14 13 17 17 N 1.46900 * 109.47181 * 179.97438 * 16 15 14 18 18 C 1.46847 * 110.99862 * 294.21003 * 17 16 15 19 19 C 1.53042 * 109.52182 * 174.16248 * 18 17 16 20 20 C 1.53117 * 109.27938 * 59.18033 * 19 18 17 21 21 C 1.53130 * 109.16054 * 302.34671 * 20 19 18 22 22 C 1.46847 * 110.99948 * 170.00263 * 17 16 15 23 23 C 1.46845 * 111.19518 * 298.25146 * 14 13 12 24 24 H 0.97002 * 120.00547 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.52427 * 57.69065 * 11 9 7 26 26 H 1.08995 * 109.52208 * 297.56384 * 11 9 7 27 27 H 1.08996 * 109.50077 * 62.25431 * 12 11 9 28 28 H 1.08993 * 109.50100 * 182.33643 * 12 11 9 29 29 H 1.09006 * 109.45986 * 179.19524 * 13 12 11 30 30 H 1.08996 * 109.46322 * 299.16841 * 13 12 11 31 31 H 1.08996 * 109.47225 * 186.04271 * 15 14 13 32 32 H 1.09007 * 109.47465 * 306.04862 * 15 14 13 33 33 H 1.08996 * 109.47113 * 300.00157 * 16 15 14 34 34 H 1.09002 * 109.46981 * 59.99663 * 16 15 14 35 35 H 1.08997 * 109.46439 * 294.17470 * 18 17 16 36 36 H 1.08996 * 109.46119 * 54.14764 * 18 17 16 37 37 H 1.09006 * 109.49827 * 299.24104 * 19 18 17 38 38 H 1.08993 * 109.53455 * 179.14488 * 19 18 17 39 39 H 1.08996 * 109.52693 * 182.44670 * 20 19 18 40 40 H 1.09000 * 109.57454 * 62.28074 * 20 19 18 41 41 H 1.09005 * 109.49998 * 297.71313 * 21 20 19 42 42 H 1.08997 * 109.53526 * 177.61578 * 21 20 19 43 43 H 1.09006 * 109.46284 * 305.85472 * 22 17 16 44 44 H 1.08996 * 109.46205 * 65.82157 * 22 17 16 45 45 H 1.09003 * 109.45905 * 181.76430 * 23 14 13 46 46 H 1.09002 * 109.46166 * 301.73872 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6250 -2.5586 0.8908 11 6 0.3709 -2.5813 -1.2498 12 6 -0.3460 -3.9341 -1.2733 13 6 0.6931 -5.0572 -1.2416 14 7 1.5091 -4.9365 -0.0266 15 6 2.4255 -6.0768 0.1073 16 6 3.4527 -6.0416 -1.0262 17 7 4.3695 -7.1815 -0.8918 18 6 5.1812 -7.0632 0.3262 19 6 6.0164 -8.3325 0.5094 20 6 6.9199 -8.5239 -0.7119 21 6 6.0529 -8.5955 -1.9722 22 6 5.2167 -7.3186 -2.0833 23 6 2.2440 -3.6654 -0.0047 24 1 -0.4851 0.8400 0.0004 25 1 0.9923 -2.4829 -2.1398 26 1 -0.3663 -1.7787 -1.2296 27 1 -0.9972 -4.0161 -0.4030 28 1 -0.9418 -4.0144 -2.1825 29 1 0.1855 -6.0218 -1.2438 30 1 1.3352 -4.9827 -2.1192 31 1 2.9405 -6.0184 1.0662 32 1 1.8588 -7.0066 0.0552 33 1 2.9377 -6.1000 -1.9850 34 1 4.0193 -5.1119 -0.9742 35 1 5.8437 -6.2021 0.2389 36 1 4.5265 -6.9318 1.1876 37 1 5.3541 -9.1924 0.6105 38 1 6.6303 -8.2387 1.4051 39 1 7.4849 -9.4498 -0.6056 40 1 7.6093 -7.6834 -0.7914 41 1 5.3913 -9.4596 -1.9100 42 1 6.6925 -8.6893 -2.8497 43 1 4.5878 -7.3727 -2.9720 44 1 5.8790 -6.4563 -2.1593 45 1 2.8629 -3.6192 0.8914 46 1 2.8786 -3.5975 -0.8883 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595614313.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:03 Heat of formation + Delta-G solvation = -13.830264 kcal Electronic energy + Delta-G solvation = -21283.426153 eV Core-core repulsion = 18399.674505 eV Total energy + Delta-G solvation = -2883.751648 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.35052 -38.05228 -34.55448 -33.07537 -31.58828 -30.92665 -29.84547 -27.55991 -24.93315 -24.61255 -23.14287 -22.63860 -21.44240 -20.57620 -19.80297 -18.28726 -16.54899 -16.04325 -15.24203 -15.05459 -14.61627 -14.49589 -14.28678 -14.06861 -13.66184 -13.54226 -13.22716 -12.85355 -12.59504 -12.29175 -12.13576 -12.00757 -11.69496 -11.49736 -11.31277 -11.03366 -10.94929 -10.85208 -10.64147 -10.56715 -10.46743 -10.23307 -10.00372 -9.80632 -9.45320 -9.00936 -8.67620 -8.34999 -8.29154 -7.55987 -5.96177 -4.02290 3.30055 3.38141 3.41613 3.84503 4.42595 4.64116 4.69370 4.73922 4.80524 5.05348 5.21440 5.29209 5.33845 5.39144 5.43076 5.50086 5.59777 5.68613 5.71793 5.76353 5.79835 5.85473 5.87767 5.96755 5.99967 6.05908 6.13277 6.21661 6.29171 6.35089 6.45099 6.54417 6.75524 6.78427 6.98973 7.07013 7.09786 7.24803 7.43956 7.70228 7.77261 7.87290 8.10906 8.19785 8.50109 9.01984 9.61946 11.09790 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.024373 B = 0.004285 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.540427 B = 6532.966258 C = 7189.705126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.889 3.111 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.513 4.513 8 H 0.052 0.948 9 C 0.054 3.946 10 H 0.034 0.966 11 C -0.110 4.110 12 C -0.118 4.118 13 C 0.062 3.938 14 N -0.534 5.534 15 C 0.061 3.939 16 C 0.017 3.983 17 N -0.534 5.534 18 C 0.051 3.949 19 C -0.116 4.116 20 C -0.122 4.122 21 C -0.115 4.115 22 C 0.054 3.946 23 C 0.065 3.935 24 H 0.259 0.741 25 H 0.028 0.972 26 H 0.090 0.910 27 H 0.060 0.940 28 H 0.045 0.955 29 H 0.058 0.942 30 H 0.023 0.977 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.039 0.961 35 H 0.031 0.969 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.030 0.970 45 H 0.056 0.944 46 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.913 -15.854 -2.640 18.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.717 3.283 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.552 4.552 8 H 0.071 0.929 9 C 0.035 3.965 10 H 0.052 0.948 11 C -0.148 4.148 12 C -0.156 4.156 13 C -0.066 4.066 14 N -0.257 5.257 15 C -0.068 4.068 16 C -0.112 4.112 17 N -0.259 5.259 18 C -0.077 4.077 19 C -0.154 4.154 20 C -0.159 4.159 21 C -0.153 4.153 22 C -0.074 4.074 23 C -0.062 4.062 24 H 0.069 0.931 25 H 0.047 0.953 26 H 0.109 0.891 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.042 0.958 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.058 0.942 35 H 0.049 0.951 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.048 0.952 45 H 0.075 0.925 46 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 8.149 -16.143 -2.190 18.215 hybrid contribution 1.572 1.738 -0.892 2.507 sum 9.721 -14.405 -3.082 17.649 Atomic orbital electron populations 1.69900 1.05817 1.26173 1.50782 1.24928 0.94816 0.98910 0.95172 0.86590 0.80107 0.84046 0.77555 1.19925 1.21098 1.21015 1.21181 0.92790 0.90723 1.50537 0.92927 1.18700 0.92643 0.90303 0.94859 0.94798 1.21645 1.00007 0.94793 0.98389 1.21684 0.97248 0.96491 1.00190 1.22040 0.95490 0.98705 0.90396 1.62286 1.23236 1.02449 1.37713 1.22189 0.92775 0.94872 0.96937 1.22900 0.95339 0.91510 1.01434 1.61956 1.19348 1.42363 1.02268 1.22155 0.95494 0.96648 0.93423 1.21580 0.97864 0.98409 0.97514 1.21583 0.97735 1.01432 0.95192 1.21574 0.97982 0.98211 0.97545 1.22079 0.95121 0.96937 0.93287 1.22343 0.96484 0.88752 0.98586 0.93127 0.95301 0.89135 0.92090 0.93588 0.92369 0.95847 0.91242 0.90797 0.90951 0.94231 0.95074 0.90204 0.91136 0.91720 0.92025 0.92423 0.91160 0.91843 0.91007 0.95159 0.92545 0.96152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.46 11.35 55.43 0.63 -24.83 16 2 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 3 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.51 -14.18 8.57 -34.44 -0.30 -14.48 16 8 H 0.05 1.44 7.75 -52.49 -0.41 1.03 16 9 C 0.05 1.36 2.27 -91.62 -0.21 1.15 16 10 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 11 C -0.11 -2.63 5.02 -26.61 -0.13 -2.77 16 12 C -0.12 -2.34 6.09 -26.65 -0.16 -2.51 16 13 C 0.06 1.10 5.05 -3.83 -0.02 1.08 16 14 N -0.53 -9.97 4.86 -234.58 -1.14 -11.11 16 15 C 0.06 0.95 5.29 -3.82 -0.02 0.92 16 16 C 0.02 0.26 4.26 -3.82 -0.02 0.24 16 17 N -0.53 -6.80 4.66 -234.67 -1.09 -7.89 16 18 C 0.05 0.60 5.29 -3.83 -0.02 0.58 16 19 C -0.12 -1.11 6.09 -26.65 -0.16 -1.28 16 20 C -0.12 -1.09 6.00 -26.60 -0.16 -1.25 16 21 C -0.12 -1.08 6.09 -26.65 -0.16 -1.24 16 22 C 0.05 0.61 5.46 -3.84 -0.02 0.59 16 23 C 0.07 1.40 4.07 -3.77 -0.02 1.38 16 24 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 25 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.09 2.42 6.15 -51.93 -0.32 2.10 16 27 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.92 8.06 -51.93 -0.42 0.50 16 30 H 0.02 0.41 6.75 -51.93 -0.35 0.06 16 31 H 0.07 1.05 6.43 -51.93 -0.33 0.72 16 32 H 0.07 1.09 8.06 -51.92 -0.42 0.67 16 33 H 0.07 1.08 6.53 -51.93 -0.34 0.74 16 34 H 0.04 0.65 6.49 -51.93 -0.34 0.31 16 35 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.95 6.21 -51.93 -0.32 0.63 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.80 8.02 -51.93 -0.42 0.38 16 44 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.06 1.21 8.12 -51.93 -0.42 0.79 16 46 H 0.02 0.44 6.61 -51.93 -0.34 0.10 16 LS Contribution 337.77 15.07 5.09 5.09 Total: -1.00 -27.99 337.77 -11.66 -39.65 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -8.64 Total: -1.32 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: -1.49 Total: -15.92 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: -1.60 Total: -43.83 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.99 -11.66 -39.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595614313.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.815 kcal (2) G-P(sol) polarization free energy of solvation -27.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds