Wall clock time and date at job start Mon Mar 30 2020 00:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46902 * 111.00032 * 2 1 4 4 C 1.50703 * 109.47183 * 293.96066 * 3 2 1 5 5 C 1.35344 * 126.75478 * 94.99423 * 4 3 2 6 6 N 1.35319 * 106.17662 * 180.02562 * 5 4 3 7 7 C 1.46494 * 125.86782 * 180.26489 * 6 5 4 8 8 N 1.28724 * 108.26150 * 0.02562 * 6 5 4 9 9 N 1.28633 * 110.17677 * 359.97438 * 8 6 5 10 10 C 1.46895 * 111.00057 * 123.95752 * 2 1 3 11 11 C 1.53003 * 109.47172 * 85.43146 * 10 2 1 12 12 C 1.52998 * 109.46953 * 300.35859 * 11 10 2 13 13 C 1.53000 * 109.47152 * 60.35884 * 11 10 2 14 14 C 1.52997 * 109.46948 * 180.36109 * 11 10 2 15 15 C 1.50697 * 109.47066 * 180.02562 * 14 11 10 16 16 H 1.07993 * 119.99950 * 359.97438 * 15 14 11 17 17 C 1.37880 * 120.00128 * 180.02562 * 15 14 11 18 18 N 1.31512 * 119.99789 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00045 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47169 * 59.99866 * 19 17 15 21 21 H 1.48505 * 109.47101 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46894 * 299.99513 * 19 17 15 23 23 H 1.08997 * 109.47385 * 67.46971 * 1 2 3 24 24 H 1.08999 * 109.47195 * 187.46996 * 1 2 3 25 25 H 1.09003 * 109.46718 * 307.46721 * 1 2 3 26 26 H 1.08991 * 109.47095 * 173.95491 * 3 2 1 27 27 H 1.09003 * 109.46892 * 53.95636 * 3 2 1 28 28 H 1.07996 * 126.91519 * 0.06360 * 5 4 3 29 29 H 1.09002 * 109.47461 * 269.71479 * 7 6 5 30 30 H 1.09004 * 109.47242 * 29.72208 * 7 6 5 31 31 H 1.09007 * 109.46840 * 149.71538 * 7 6 5 32 32 H 1.09002 * 109.46858 * 205.42905 * 10 2 1 33 33 H 1.09000 * 109.46981 * 325.42978 * 10 2 1 34 34 H 1.09002 * 109.46912 * 68.65380 * 12 11 10 35 35 H 1.08997 * 109.47071 * 188.65486 * 12 11 10 36 36 H 1.08994 * 109.47340 * 308.65605 * 12 11 10 37 37 H 1.09003 * 109.46675 * 60.00141 * 13 11 10 38 38 H 1.08996 * 109.46800 * 179.97438 * 13 11 10 39 39 H 1.08997 * 109.47289 * 300.00014 * 13 11 10 40 40 H 1.09003 * 109.47364 * 300.00156 * 14 11 10 41 41 H 1.09002 * 109.47573 * 59.99553 * 14 11 10 42 42 H 0.97006 * 119.99780 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 -1.2984 5 6 0.5663 2.8427 -1.5287 6 7 0.6495 3.2207 -2.8253 7 6 -0.2936 4.0951 -3.5267 8 7 1.7026 2.6839 -3.3352 9 7 2.3136 1.9780 -2.4503 10 6 1.9955 -0.7660 1.1375 11 6 2.0710 -2.2477 0.7634 12 6 0.6734 -2.7540 0.4011 13 6 3.0042 -2.4239 -0.4362 14 6 2.6109 -3.0467 1.9512 15 6 2.6858 -4.5059 1.5826 16 1 2.3787 -4.8310 0.5996 17 6 3.1455 -5.4262 2.5007 18 7 3.5190 -5.0304 3.6979 19 14 3.2378 -7.2352 2.0439 20 1 4.1439 -7.4062 0.8800 21 1 3.7619 -8.0107 3.1968 22 1 1.8814 -7.7265 1.6918 23 1 -0.3634 0.3938 -0.9492 24 1 -0.3633 -1.0189 0.1336 25 1 -0.3633 0.6252 0.8157 26 1 3.0797 1.3444 0.1082 27 1 1.5612 1.9273 0.8310 28 1 -0.1998 3.1204 -0.8201 29 1 -1.0805 3.4919 -3.9796 30 1 -0.7352 4.7959 -2.8181 31 1 0.2332 4.6483 -4.3043 32 1 2.9922 -0.4037 1.3894 33 1 1.3357 -0.6412 1.9961 34 1 0.3519 -2.2952 -0.5339 35 1 0.6985 -3.8374 0.2844 36 1 -0.0256 -2.4901 1.1946 37 1 3.9998 -2.0631 -0.1780 38 1 3.0583 -3.4795 -0.7024 39 1 2.6196 -1.8547 -1.2824 40 1 3.6065 -2.6859 2.2095 41 1 1.9461 -2.9211 2.8059 42 1 3.8427 -5.6778 4.3437 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597209829.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:43 Heat of formation + Delta-G solvation = 103.818834 kcal Electronic energy + Delta-G solvation = -20622.169228 eV Core-core repulsion = 17639.978884 eV Total energy + Delta-G solvation = -2982.190344 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.29524 -38.32136 -35.42931 -34.46877 -32.29080 -31.21579 -28.46269 -27.77265 -27.05593 -26.30098 -25.81941 -23.39891 -22.12915 -21.94025 -20.64809 -17.89928 -17.24177 -16.75826 -16.12945 -15.31271 -15.27093 -14.85541 -14.44012 -14.32025 -13.60261 -13.52660 -13.08683 -12.83620 -12.66582 -12.61185 -12.06670 -11.93261 -11.70704 -11.61056 -11.14185 -10.81150 -10.75708 -10.68743 -10.54028 -10.29834 -10.28414 -10.14482 -9.92357 -9.50990 -9.30726 -8.86980 -8.79918 -8.24966 -7.89918 -5.90111 -3.89468 1.47888 2.20961 2.50468 3.39664 3.43760 3.46734 4.11545 4.36705 4.37855 4.55796 4.60202 4.77212 4.87678 5.02502 5.31819 5.45602 5.49221 5.55156 5.65476 5.78864 5.85688 6.00992 6.10054 6.13973 6.17254 6.32639 6.42033 6.43195 6.64182 6.83704 6.90943 6.97599 7.30973 7.33095 7.35064 7.45320 7.56164 7.78326 7.94160 8.10999 8.48890 8.56400 9.15797 9.72839 11.21618 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.045424 B = 0.003591 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.272807 B = 7795.180761 C = 7873.868956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 N -0.527 5.527 3 C 0.137 3.863 4 C 0.003 3.997 5 C -0.052 4.052 6 N -0.299 5.299 7 C 0.083 3.917 8 N -0.092 5.092 9 N -0.248 5.248 10 C 0.067 3.933 11 C -0.051 4.051 12 C -0.132 4.132 13 C -0.116 4.116 14 C 0.034 3.966 15 C -0.505 4.505 16 H 0.059 0.941 17 C 0.054 3.946 18 N -0.899 5.899 19 Si 0.887 3.113 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.278 1.278 23 H 0.053 0.947 24 H 0.094 0.906 25 H 0.018 0.982 26 H 0.092 0.908 27 H 0.047 0.953 28 H 0.186 0.814 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.066 0.934 33 H 0.035 0.965 34 H 0.044 0.956 35 H 0.062 0.938 36 H 0.036 0.964 37 H 0.037 0.963 38 H 0.052 0.948 39 H 0.045 0.955 40 H 0.014 0.986 41 H 0.012 0.988 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.011 19.101 -9.507 23.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 N -0.251 5.251 3 C 0.007 3.993 4 C -0.136 4.136 5 C -0.204 4.204 6 N -0.093 5.093 7 C -0.058 4.058 8 N -0.072 5.072 9 N -0.115 5.115 10 C -0.060 4.060 11 C -0.052 4.052 12 C -0.188 4.188 13 C -0.173 4.173 14 C -0.004 4.004 15 C -0.543 4.543 16 H 0.077 0.923 17 C -0.146 4.146 18 N -0.539 5.539 19 Si 0.715 3.285 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.204 1.204 23 H 0.072 0.928 24 H 0.112 0.888 25 H 0.036 0.964 26 H 0.110 0.890 27 H 0.065 0.935 28 H 0.203 0.797 29 H 0.108 0.892 30 H 0.115 0.885 31 H 0.118 0.882 32 H 0.085 0.915 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.081 0.919 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.033 0.967 41 H 0.030 0.970 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.939 18.678 -11.063 23.477 hybrid contribution -1.088 -0.335 1.502 1.885 sum -10.028 18.343 -9.561 22.987 Atomic orbital electron populations 1.22910 0.88167 1.03712 0.99416 1.61867 1.07365 1.10911 1.44949 1.20351 1.01333 0.88676 0.88919 1.21906 0.94295 1.00646 0.96786 1.23359 1.03976 1.05300 0.87740 1.47213 1.19372 1.33841 1.08838 1.22212 0.91613 0.93399 0.98616 1.78340 0.96366 1.10175 1.22315 1.75107 1.23469 1.14311 0.98566 1.22356 0.98826 0.95305 0.89555 1.20557 0.95364 0.91253 0.97997 1.21981 0.96251 1.01907 0.98697 1.21586 0.97864 1.00848 0.96988 1.19124 0.95723 0.94074 0.91472 1.21218 1.41945 0.92204 0.98946 0.92312 1.25007 0.95853 0.98607 0.95123 1.69958 1.44607 1.34147 1.05198 0.86738 0.78307 0.85629 0.77803 1.20303 1.21504 1.20397 0.92811 0.88813 0.96381 0.88964 0.93458 0.79720 0.89217 0.88526 0.88189 0.91542 0.94684 0.93683 0.91883 0.94456 0.94406 0.92896 0.93578 0.96736 0.97005 0.93183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 8.43 60.07 0.51 0.58 16 2 N -0.53 -8.04 3.77 -244.37 -0.92 -8.96 16 3 C 0.14 1.81 5.46 -4.97 -0.03 1.78 16 4 C 0.00 0.03 5.98 -82.78 -0.49 -0.46 16 5 C -0.05 -0.52 10.78 -17.05 -0.18 -0.71 16 6 N -0.30 -3.00 3.74 -68.06 -0.25 -3.25 16 7 C 0.08 0.35 11.39 59.84 0.68 1.04 16 8 N -0.09 -1.31 13.17 60.35 0.79 -0.52 16 9 N -0.25 -3.99 12.41 33.29 0.41 -3.58 16 10 C 0.07 1.16 4.24 -3.82 -0.02 1.14 16 11 C -0.05 -1.05 0.60 -154.51 -0.09 -1.14 16 12 C -0.13 -2.53 6.67 37.16 0.25 -2.28 16 13 C -0.12 -2.39 8.06 37.16 0.30 -2.09 16 14 C 0.03 0.85 4.04 -27.89 -0.11 0.74 16 15 C -0.50 -14.02 7.53 -34.44 -0.26 -14.28 16 16 H 0.06 1.60 5.72 -52.49 -0.30 1.30 16 17 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 18 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 19 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H 0.05 0.68 7.02 -51.93 -0.36 0.32 16 24 H 0.09 1.35 3.89 -51.93 -0.20 1.14 16 25 H 0.02 0.21 8.03 -51.93 -0.42 -0.21 16 26 H 0.09 1.27 7.79 -51.93 -0.40 0.87 16 27 H 0.05 0.52 8.04 -51.93 -0.42 0.11 16 28 H 0.19 1.16 8.06 -52.49 -0.42 0.74 16 29 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.10 0.15 8.14 -51.93 -0.42 -0.28 16 31 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 1.15 7.57 -51.93 -0.39 0.76 16 33 H 0.03 0.60 7.85 -51.93 -0.41 0.19 16 34 H 0.04 0.79 6.21 -51.93 -0.32 0.47 16 35 H 0.06 1.33 6.38 -51.93 -0.33 1.00 16 36 H 0.04 0.68 7.47 -51.93 -0.39 0.29 16 37 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.05 1.16 6.62 -51.93 -0.34 0.82 16 39 H 0.05 0.91 7.61 -51.93 -0.40 0.51 16 40 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 331.29 15.07 4.99 4.99 Total: -1.00 -33.75 331.29 -5.59 -39.34 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: -6.78 Total: -4.32 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: 0.45 Total: -14.21 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: 0.77 Total: -42.70 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.75 -5.59 -39.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597209829.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.161 kcal (2) G-P(sol) polarization free energy of solvation -33.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds