Wall clock time and date at job start Mon Mar 30 2020 00:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46902 * 111.00032 * 2 1 4 4 C 1.50703 * 109.47183 * 293.96066 * 3 2 1 5 5 C 1.35344 * 126.75478 * 94.99423 * 4 3 2 6 6 N 1.35319 * 106.17662 * 180.02562 * 5 4 3 7 7 C 1.46494 * 125.86782 * 180.26489 * 6 5 4 8 8 N 1.28724 * 108.26150 * 0.02562 * 6 5 4 9 9 N 1.28633 * 110.17677 * 359.97438 * 8 6 5 10 10 C 1.46895 * 111.00057 * 123.95752 * 2 1 3 11 11 C 1.53003 * 109.47172 * 85.43146 * 10 2 1 12 12 C 1.52998 * 109.46953 * 300.35859 * 11 10 2 13 13 C 1.53000 * 109.47152 * 60.35884 * 11 10 2 14 14 C 1.52997 * 109.46948 * 180.36109 * 11 10 2 15 15 C 1.50697 * 109.47066 * 180.02562 * 14 11 10 16 16 H 1.07993 * 119.99950 * 359.97438 * 15 14 11 17 17 C 1.37880 * 120.00128 * 180.02562 * 15 14 11 18 18 N 1.31512 * 119.99789 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00045 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47169 * 59.99866 * 19 17 15 21 21 H 1.48505 * 109.47101 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46894 * 299.99513 * 19 17 15 23 23 H 1.08997 * 109.47385 * 67.46971 * 1 2 3 24 24 H 1.08999 * 109.47195 * 187.46996 * 1 2 3 25 25 H 1.09003 * 109.46718 * 307.46721 * 1 2 3 26 26 H 1.08991 * 109.47095 * 173.95491 * 3 2 1 27 27 H 1.09003 * 109.46892 * 53.95636 * 3 2 1 28 28 H 1.07996 * 126.91519 * 0.06360 * 5 4 3 29 29 H 1.09002 * 109.47461 * 269.71479 * 7 6 5 30 30 H 1.09004 * 109.47242 * 29.72208 * 7 6 5 31 31 H 1.09007 * 109.46840 * 149.71538 * 7 6 5 32 32 H 1.09002 * 109.46858 * 205.42905 * 10 2 1 33 33 H 1.09000 * 109.46981 * 325.42978 * 10 2 1 34 34 H 1.09002 * 109.46912 * 68.65380 * 12 11 10 35 35 H 1.08997 * 109.47071 * 188.65486 * 12 11 10 36 36 H 1.08994 * 109.47340 * 308.65605 * 12 11 10 37 37 H 1.09003 * 109.46675 * 60.00141 * 13 11 10 38 38 H 1.08996 * 109.46800 * 179.97438 * 13 11 10 39 39 H 1.08997 * 109.47289 * 300.00014 * 13 11 10 40 40 H 1.09003 * 109.47364 * 300.00156 * 14 11 10 41 41 H 1.09002 * 109.47573 * 59.99553 * 14 11 10 42 42 H 0.97006 * 119.99780 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 -1.2984 5 6 0.5663 2.8427 -1.5287 6 7 0.6495 3.2207 -2.8253 7 6 -0.2936 4.0951 -3.5267 8 7 1.7026 2.6839 -3.3352 9 7 2.3136 1.9780 -2.4503 10 6 1.9955 -0.7660 1.1375 11 6 2.0710 -2.2477 0.7634 12 6 0.6734 -2.7540 0.4011 13 6 3.0042 -2.4239 -0.4362 14 6 2.6109 -3.0467 1.9512 15 6 2.6858 -4.5059 1.5826 16 1 2.3787 -4.8310 0.5996 17 6 3.1455 -5.4262 2.5007 18 7 3.5190 -5.0304 3.6979 19 14 3.2378 -7.2352 2.0439 20 1 4.1439 -7.4062 0.8800 21 1 3.7619 -8.0107 3.1968 22 1 1.8814 -7.7265 1.6918 23 1 -0.3634 0.3938 -0.9492 24 1 -0.3633 -1.0189 0.1336 25 1 -0.3633 0.6252 0.8157 26 1 3.0797 1.3444 0.1082 27 1 1.5612 1.9273 0.8310 28 1 -0.1998 3.1204 -0.8201 29 1 -1.0805 3.4919 -3.9796 30 1 -0.7352 4.7959 -2.8181 31 1 0.2332 4.6483 -4.3043 32 1 2.9922 -0.4037 1.3894 33 1 1.3357 -0.6412 1.9961 34 1 0.3519 -2.2952 -0.5339 35 1 0.6985 -3.8374 0.2844 36 1 -0.0256 -2.4901 1.1946 37 1 3.9998 -2.0631 -0.1780 38 1 3.0583 -3.4795 -0.7024 39 1 2.6196 -1.8547 -1.2824 40 1 3.6065 -2.6859 2.2095 41 1 1.9461 -2.9211 2.8059 42 1 3.8427 -5.6778 4.3437 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597209829.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:42 Heat of formation + Delta-G solvation = 80.712583 kcal Electronic energy + Delta-G solvation = -20623.171190 eV Core-core repulsion = 17639.978884 eV Total energy + Delta-G solvation = -2983.192306 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.14767 -39.71651 -36.79883 -35.39533 -34.27873 -32.28102 -29.38770 -28.96178 -28.69515 -27.66765 -27.28109 -25.19307 -23.31066 -22.90709 -21.63194 -19.53800 -18.27817 -17.98804 -17.55378 -16.72689 -16.35999 -16.14585 -15.89904 -15.43719 -14.68433 -14.60177 -14.35776 -14.03040 -13.93199 -13.86148 -13.53405 -13.43981 -12.92983 -12.83498 -12.61421 -12.55891 -12.43651 -12.25506 -12.14010 -11.97793 -11.68245 -11.63723 -11.22689 -10.95783 -10.82342 -10.64343 -10.46312 -10.16414 -9.06120 -8.10978 -6.17111 0.69680 1.41864 1.44295 1.51146 1.52243 1.65064 2.46075 3.19401 3.22703 3.45555 3.83082 4.06156 4.15572 4.21255 4.27473 4.36861 4.44715 4.51080 4.57878 4.65054 4.66645 4.76553 4.85555 4.91645 5.01590 5.06189 5.10340 5.13508 5.21444 5.25932 5.29238 5.56081 5.58368 5.64983 5.70715 5.75219 5.92234 5.97698 6.19012 6.30291 6.43308 6.97473 7.49494 7.59502 9.01030 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.045424 B = 0.003591 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.272807 B = 7795.180761 C = 7873.868956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 N -0.541 5.541 3 C 0.141 3.859 4 C -0.023 4.023 5 C -0.029 4.029 6 N -0.289 5.289 7 C 0.070 3.930 8 N -0.127 5.127 9 N -0.300 5.300 10 C 0.079 3.921 11 C -0.049 4.049 12 C -0.120 4.120 13 C -0.104 4.104 14 C 0.042 3.958 15 C -0.514 4.514 16 H 0.062 0.938 17 C -0.002 4.002 18 N -0.937 5.937 19 Si 0.953 3.047 20 H -0.271 1.271 21 H -0.286 1.286 22 H -0.268 1.268 23 H 0.062 0.938 24 H 0.082 0.918 25 H 0.040 0.960 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.229 0.771 29 H 0.105 0.895 30 H 0.132 0.868 31 H 0.105 0.895 32 H 0.059 0.941 33 H 0.039 0.961 34 H 0.066 0.934 35 H 0.038 0.962 36 H 0.045 0.955 37 H 0.027 0.973 38 H 0.034 0.966 39 H 0.056 0.944 40 H -0.016 1.016 41 H -0.011 1.011 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.294 20.406 -10.305 25.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 N -0.265 5.265 3 C 0.012 3.988 4 C -0.163 4.163 5 C -0.181 4.181 6 N -0.082 5.082 7 C -0.069 4.069 8 N -0.106 5.106 9 N -0.166 5.166 10 C -0.049 4.049 11 C -0.050 4.050 12 C -0.177 4.177 13 C -0.161 4.161 14 C 0.004 3.996 15 C -0.553 4.553 16 H 0.080 0.920 17 C -0.199 4.199 18 N -0.578 5.578 19 Si 0.779 3.221 20 H -0.197 1.197 21 H -0.212 1.212 22 H -0.193 1.193 23 H 0.081 0.919 24 H 0.100 0.900 25 H 0.059 0.941 26 H 0.094 0.906 27 H 0.093 0.907 28 H 0.246 0.754 29 H 0.123 0.877 30 H 0.150 0.850 31 H 0.123 0.877 32 H 0.078 0.922 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.047 0.953 38 H 0.053 0.947 39 H 0.075 0.925 40 H 0.003 0.997 41 H 0.007 0.993 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -11.235 20.006 -11.912 25.852 hybrid contribution -0.444 -0.625 1.726 1.888 sum -11.679 19.380 -10.186 24.814 Atomic orbital electron populations 1.22868 0.86688 1.03532 1.00768 1.61722 1.08780 1.12333 1.43657 1.20302 1.00568 0.87785 0.90172 1.22014 0.95747 1.02372 0.96175 1.23909 1.03209 1.02968 0.88062 1.47667 1.18627 1.32833 1.09112 1.22723 0.90968 0.93538 0.99668 1.78241 0.98200 1.11515 1.22674 1.75033 1.25457 1.16069 0.99995 1.22038 0.98941 0.93393 0.90514 1.20435 0.95834 0.93064 0.95637 1.21877 0.95454 1.00316 1.00067 1.21457 0.97562 0.99659 0.97411 1.18985 0.93750 0.94089 0.92743 1.21594 1.41205 0.93476 0.98987 0.91990 1.25871 0.95653 1.03317 0.95067 1.70093 1.45753 1.35655 1.06303 0.85679 0.78758 0.80118 0.77584 1.19666 1.21201 1.19258 0.91888 0.90000 0.94132 0.90608 0.90697 0.75424 0.87677 0.84982 0.87654 0.92224 0.94302 0.91566 0.94247 0.93560 0.95338 0.94660 0.92457 0.99733 0.99282 0.93168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 8.43 127.69 1.08 1.29 16 2 N -0.54 -15.61 3.77 -927.04 -3.49 -19.10 16 3 C 0.14 3.50 5.46 85.56 0.47 3.97 16 4 C -0.02 -0.58 5.98 41.59 0.25 -0.33 16 5 C -0.03 -0.47 10.78 83.49 0.90 0.43 16 6 N -0.29 -4.99 3.74 -369.24 -1.38 -6.37 16 7 C 0.07 0.34 11.39 127.77 1.46 1.80 16 8 N -0.13 -3.49 13.17 37.02 0.49 -3.00 16 9 N -0.30 -9.57 12.41 -48.60 -0.60 -10.18 16 10 C 0.08 2.70 4.24 86.31 0.37 3.07 16 11 C -0.05 -2.02 0.60 -52.18 -0.03 -2.06 16 12 C -0.12 -4.54 6.67 71.98 0.48 -4.06 16 13 C -0.10 -4.33 8.06 71.98 0.58 -3.75 16 14 C 0.04 2.20 4.04 29.85 0.12 2.32 16 15 C -0.51 -29.12 7.53 25.60 0.19 -28.93 16 16 H 0.06 3.41 5.72 -2.91 -0.02 3.39 16 17 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 18 N -0.94 -57.77 13.29 21.45 0.28 -57.48 16 19 Si 0.95 45.33 29.54 68.60 2.03 47.36 16 20 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 21 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 22 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 23 H 0.06 1.38 7.02 -2.39 -0.02 1.37 16 24 H 0.08 2.13 3.89 -2.39 -0.01 2.12 16 25 H 0.04 0.78 8.03 -2.39 -0.02 0.76 16 26 H 0.08 2.09 7.79 -2.39 -0.02 2.08 16 27 H 0.08 1.43 8.04 -2.39 -0.02 1.41 16 28 H 0.23 1.53 8.06 -2.91 -0.02 1.51 16 29 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.13 -0.26 8.14 -2.39 -0.02 -0.28 16 31 H 0.10 0.44 8.14 -2.38 -0.02 0.42 16 32 H 0.06 2.10 7.57 -2.39 -0.02 2.08 16 33 H 0.04 1.29 7.85 -2.39 -0.02 1.27 16 34 H 0.07 2.21 6.21 -2.39 -0.01 2.20 16 35 H 0.04 1.65 6.38 -2.39 -0.02 1.63 16 36 H 0.05 1.64 7.47 -2.39 -0.02 1.62 16 37 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.03 1.56 6.62 -2.39 -0.02 1.54 16 39 H 0.06 2.25 7.61 -2.39 -0.02 2.23 16 40 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 41 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 42 H 0.26 15.18 8.31 -92.70 -0.77 14.41 16 Total: -1.00 -75.79 331.29 4.63 -71.16 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: 0.99 Total: 3.56 kcal Atomic # 6 Polarization: -32.25 SS G_CDS: 6.32 Total: -25.93 kcal Atomic # 7 Polarization: -91.44 SS G_CDS: -4.70 Total: -96.14 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -75.79 4.63 -71.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597209829.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.870 kcal (2) G-P(sol) polarization free energy of solvation -75.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds