Wall clock time and date at job start Mon Mar 30 2020 00:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50694 * 109.47366 * 2 1 4 4 N 1.30834 * 125.96752 * 265.00001 * 3 2 1 5 5 C 1.33236 * 109.83349 * 179.97438 * 4 3 2 6 6 C 1.50706 * 125.52684 * 180.02562 * 5 4 3 7 7 H 1.09001 * 109.46885 * 344.99988 * 6 5 4 8 8 C 1.52995 * 109.47005 * 105.00264 * 6 5 4 9 9 N 1.46897 * 109.47133 * 225.00182 * 6 5 4 10 10 C 1.46896 * 111.00246 * 154.99984 * 9 6 5 11 11 C 1.52998 * 109.47357 * 180.02562 * 10 9 6 12 12 H 1.08998 * 109.47104 * 55.00451 * 11 10 9 13 13 C 1.52998 * 109.47026 * 294.99646 * 11 10 9 14 14 C 1.53002 * 109.46886 * 174.99797 * 11 10 9 15 15 C 1.50706 * 109.47153 * 184.99546 * 14 11 10 16 16 H 1.07998 * 119.99503 * 0.02562 * 15 14 11 17 17 C 1.37871 * 120.00434 * 180.02562 * 15 14 11 18 18 N 1.31516 * 119.99826 * 359.72891 * 17 15 14 19 19 Si 1.86800 * 120.00406 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47364 * 179.72558 * 19 17 15 21 21 H 1.48508 * 109.46883 * 299.72681 * 19 17 15 22 22 H 1.48497 * 109.46870 * 59.72491 * 19 17 15 23 23 N 1.30709 * 108.94531 * 0.26707 * 5 4 3 24 24 N 1.34432 * 125.96133 * 84.97199 * 3 2 1 25 25 H 0.97004 * 126.82056 * 0.03047 * 24 3 2 26 26 H 1.09001 * 109.47354 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47359 * 300.00176 * 1 2 3 28 28 H 1.09007 * 109.46928 * 59.99712 * 1 2 3 29 29 H 1.09000 * 109.47409 * 240.00196 * 2 1 3 30 30 H 1.08999 * 109.47254 * 120.00422 * 2 1 3 31 31 H 1.09001 * 109.47524 * 60.00115 * 8 6 5 32 32 H 1.08997 * 109.47371 * 179.97438 * 8 6 5 33 33 H 1.08998 * 109.47146 * 300.00019 * 8 6 5 34 34 H 1.00901 * 111.00077 * 278.95975 * 9 6 5 35 35 H 1.09001 * 109.47205 * 59.99991 * 10 9 6 36 36 H 1.09002 * 109.47023 * 300.00245 * 10 9 6 37 37 H 1.09001 * 109.46970 * 60.00396 * 13 11 10 38 38 H 1.09003 * 109.46843 * 179.97438 * 13 11 10 39 39 H 1.08990 * 109.47503 * 300.00380 * 13 11 10 40 40 H 1.09004 * 109.47178 * 65.00336 * 14 11 10 41 41 H 1.08993 * 109.47411 * 305.00018 * 14 11 10 42 42 H 0.97000 * 120.00236 * 0.27947 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.3755 2.1144 -1.0549 5 6 2.7713 3.3320 -0.6861 6 6 3.2415 4.4196 -1.6174 7 1 3.4635 3.9903 -2.5944 8 6 2.1448 5.4766 -1.7620 9 7 4.4534 5.0432 -1.0697 10 6 5.2633 5.6465 -2.1365 11 6 6.5143 6.2839 -1.5287 12 1 7.0530 5.5396 -0.9423 13 6 6.1053 7.4478 -0.6238 14 6 7.4182 6.8023 -2.6491 15 6 8.7046 7.3191 -2.0581 16 1 8.8619 7.2811 -0.9903 17 6 9.6808 7.8402 -2.8806 18 7 9.4914 7.8815 -4.1814 19 14 11.2756 8.4801 -2.1482 20 1 12.1554 8.9778 -3.2361 21 1 10.9778 9.5888 -1.2061 22 1 11.9613 7.3825 -1.4201 23 7 2.6904 3.4286 0.6149 24 7 2.2056 2.1968 1.0839 25 1 2.0337 1.9530 2.0070 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.9227 5.9058 -0.7850 32 1 2.4850 6.2634 -2.4353 33 1 1.2455 5.0138 -2.1685 34 1 4.2215 5.7245 -0.3625 35 1 4.6783 6.4103 -2.6490 36 1 5.5581 4.8759 -2.8488 37 1 5.4613 7.0785 0.1744 38 1 6.9965 7.9017 -0.1904 39 1 5.5666 8.1921 -1.2101 40 1 6.9126 7.6088 -3.1800 41 1 7.6373 5.9914 -3.3436 42 1 8.6634 7.5490 -4.5618 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602577679.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:27 Heat of formation + Delta-G solvation = 51.425666 kcal Electronic energy + Delta-G solvation = -19857.205389 eV Core-core repulsion = 16872.743107 eV Total energy + Delta-G solvation = -2984.462282 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.24912 -37.61086 -35.21481 -34.20395 -32.72229 -32.06670 -30.15372 -29.08655 -26.45812 -25.36259 -24.72921 -23.91351 -22.30450 -20.88573 -20.10577 -19.18088 -18.00402 -16.70258 -15.94998 -15.46631 -15.12516 -14.84646 -14.46207 -14.35458 -13.68531 -13.49347 -13.26535 -12.91676 -12.81438 -12.55706 -12.28293 -11.95453 -11.86599 -11.61650 -11.50762 -11.39895 -11.33130 -10.97238 -10.66534 -10.26230 -10.12017 -10.08976 -10.03301 -9.80421 -9.57353 -9.38077 -8.43431 -8.25150 -8.18790 -6.27545 -3.95249 1.50289 2.50653 2.79012 3.48471 3.50765 3.66663 3.69171 4.33783 4.41868 4.58064 4.63218 4.71960 4.89115 5.05056 5.13001 5.23926 5.32494 5.47998 5.48713 5.57473 5.67153 5.70687 5.75085 5.82649 5.97367 6.04937 6.16531 6.24339 6.37641 6.42441 6.52564 6.84794 6.91734 7.07190 7.09089 7.28325 7.48625 7.60165 7.69108 8.04631 8.32361 8.55639 8.97888 9.75958 11.13007 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.038227 B = 0.003048 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.297678 B = 9184.129620 C = 9299.914398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.046 4.046 3 C 0.279 3.721 4 N -0.536 5.536 5 C 0.250 3.750 6 C 0.174 3.826 7 H 0.104 0.896 8 C -0.175 4.175 9 N -0.680 5.680 10 C 0.065 3.935 11 C -0.077 4.077 12 H 0.066 0.934 13 C -0.133 4.133 14 C 0.015 3.985 15 C -0.593 4.593 16 H 0.049 0.951 17 C 0.012 3.988 18 N -0.916 5.916 19 Si 1.067 2.933 20 H -0.283 1.283 21 H -0.289 1.289 22 H -0.289 1.289 23 N -0.298 5.298 24 N -0.487 5.487 25 H 0.437 0.563 26 H 0.071 0.929 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.346 0.654 35 H 0.028 0.972 36 H 0.068 0.932 37 H 0.033 0.967 38 H 0.063 0.937 39 H 0.040 0.960 40 H 0.006 0.994 41 H 0.006 0.994 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.894 -13.767 9.425 25.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.086 4.086 3 C 0.001 3.999 4 N -0.265 5.265 5 C -0.034 4.034 6 C 0.061 3.939 7 H 0.122 0.878 8 C -0.235 4.235 9 N -0.312 5.312 10 C -0.063 4.063 11 C -0.095 4.095 12 H 0.085 0.915 13 C -0.191 4.191 14 C -0.023 4.023 15 C -0.631 4.631 16 H 0.068 0.932 17 C -0.191 4.191 18 N -0.553 5.553 19 Si 0.896 3.104 20 H -0.209 1.209 21 H -0.215 1.215 22 H -0.215 1.215 23 N -0.126 5.126 24 N -0.205 5.205 25 H 0.282 0.718 26 H 0.090 0.910 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.121 0.879 30 H 0.106 0.894 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.166 0.834 35 H 0.046 0.954 36 H 0.087 0.913 37 H 0.052 0.948 38 H 0.082 0.918 39 H 0.060 0.940 40 H 0.024 0.976 41 H 0.025 0.975 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.850 -13.091 9.061 23.919 hybrid contribution -2.164 -0.295 0.919 2.370 sum -20.015 -13.386 9.980 26.065 Atomic orbital electron populations 1.21751 0.93304 1.02838 1.02750 1.20165 0.96752 0.86543 1.05133 1.24318 0.96315 0.96153 0.83156 1.70315 1.21964 1.04621 1.29561 1.24153 0.96144 0.93010 0.90048 1.19697 0.89738 0.89840 0.94612 0.87819 1.22451 0.99191 0.99152 1.02705 1.60404 1.17891 1.38104 1.14816 1.22203 0.94463 0.96976 0.92679 1.21075 0.93838 0.96423 0.98209 0.91545 1.21731 1.00866 0.98146 0.98342 1.19239 0.94494 0.95186 0.93339 1.22034 1.02092 1.43987 0.95009 0.93248 1.25813 1.02803 0.95400 0.95100 1.70777 1.28338 1.44755 1.11446 0.83572 0.75458 0.76293 0.75107 1.20877 1.21546 1.21519 1.78031 1.21425 1.00575 1.12610 1.48021 1.51579 1.10661 1.10195 0.71832 0.91034 0.92650 0.91652 0.87851 0.89447 0.92026 0.91154 0.91902 0.83381 0.95416 0.91317 0.94761 0.91767 0.94047 0.97613 0.97545 0.92168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.89 37.16 0.37 -0.35 16 2 C -0.05 -0.28 6.56 -27.89 -0.18 -0.46 16 3 C 0.28 2.97 7.49 -155.69 -1.17 1.81 16 4 N -0.54 -7.57 11.19 -8.16 -0.09 -7.66 16 5 C 0.25 3.73 6.99 -156.86 -1.10 2.64 16 6 C 0.17 2.50 3.13 -68.87 -0.22 2.29 16 7 H 0.10 1.51 7.80 -51.93 -0.40 1.10 16 8 C -0.18 -2.12 9.14 37.15 0.34 -1.78 16 9 N -0.68 -10.95 6.21 -107.96 -0.67 -11.62 16 10 C 0.07 1.16 4.94 -3.83 -0.02 1.14 16 11 C -0.08 -1.62 2.55 -90.62 -0.23 -1.85 16 12 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 13 C -0.13 -2.60 8.77 37.16 0.33 -2.27 16 14 C 0.01 0.39 3.76 -27.88 -0.10 0.28 16 15 C -0.59 -17.10 8.41 -34.44 -0.29 -17.39 16 16 H 0.05 1.41 7.06 -52.49 -0.37 1.04 16 17 C 0.01 0.35 5.46 -17.82 -0.10 0.26 16 18 N -0.92 -28.64 13.65 55.43 0.76 -27.88 16 19 Si 1.07 25.91 29.90 -169.99 -5.08 20.83 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 N -0.30 -4.31 12.78 32.42 0.41 -3.89 16 24 N -0.49 -5.13 7.45 32.62 0.24 -4.89 16 25 H 0.44 2.93 8.96 -182.33 -1.63 1.29 16 26 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 27 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 32 H 0.07 0.83 7.45 -51.93 -0.39 0.44 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.35 5.43 6.73 -39.29 -0.26 5.17 16 35 H 0.03 0.47 7.44 -51.93 -0.39 0.09 16 36 H 0.07 1.26 8.06 -51.93 -0.42 0.84 16 37 H 0.03 0.57 6.68 -51.93 -0.35 0.23 16 38 H 0.06 1.36 6.95 -51.93 -0.36 1.00 16 39 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.01 0.15 8.01 -51.93 -0.42 -0.26 16 41 H 0.01 0.17 8.00 -51.93 -0.42 -0.24 16 42 H 0.27 8.33 7.22 -40.82 -0.29 8.04 16 LS Contribution 343.22 15.07 5.17 5.17 Total: -1.00 -34.29 343.22 -9.93 -44.22 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -8.30 Total: 1.41 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: -2.37 Total: -15.68 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: 0.65 Total: -55.95 kcal Atomic # 14 Polarization: 25.91 SS G_CDS: -5.08 Total: 20.83 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.29 -9.93 -44.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602577679.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.644 kcal (2) G-P(sol) polarization free energy of solvation -34.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds