Wall clock time and date at job start Mon Mar 30 2020 00:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50694 * 109.47366 * 2 1 4 4 N 1.30834 * 125.96752 * 265.00001 * 3 2 1 5 5 C 1.33236 * 109.83349 * 179.97438 * 4 3 2 6 6 C 1.50706 * 125.52684 * 180.02562 * 5 4 3 7 7 H 1.09001 * 109.46885 * 344.99988 * 6 5 4 8 8 C 1.52995 * 109.47005 * 105.00264 * 6 5 4 9 9 N 1.46897 * 109.47133 * 225.00182 * 6 5 4 10 10 C 1.46896 * 111.00246 * 154.99984 * 9 6 5 11 11 C 1.52998 * 109.47357 * 180.02562 * 10 9 6 12 12 H 1.08998 * 109.47104 * 55.00451 * 11 10 9 13 13 C 1.52998 * 109.47026 * 294.99646 * 11 10 9 14 14 C 1.53002 * 109.46886 * 174.99797 * 11 10 9 15 15 C 1.50706 * 109.47153 * 184.99546 * 14 11 10 16 16 H 1.07998 * 119.99503 * 0.02562 * 15 14 11 17 17 C 1.37871 * 120.00434 * 180.02562 * 15 14 11 18 18 N 1.31516 * 119.99826 * 359.72891 * 17 15 14 19 19 Si 1.86800 * 120.00406 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47364 * 179.72558 * 19 17 15 21 21 H 1.48508 * 109.46883 * 299.72681 * 19 17 15 22 22 H 1.48497 * 109.46870 * 59.72491 * 19 17 15 23 23 N 1.30709 * 108.94531 * 0.26707 * 5 4 3 24 24 N 1.34432 * 125.96133 * 84.97199 * 3 2 1 25 25 H 0.97004 * 126.82056 * 0.03047 * 24 3 2 26 26 H 1.09001 * 109.47354 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47359 * 300.00176 * 1 2 3 28 28 H 1.09007 * 109.46928 * 59.99712 * 1 2 3 29 29 H 1.09000 * 109.47409 * 240.00196 * 2 1 3 30 30 H 1.08999 * 109.47254 * 120.00422 * 2 1 3 31 31 H 1.09001 * 109.47524 * 60.00115 * 8 6 5 32 32 H 1.08997 * 109.47371 * 179.97438 * 8 6 5 33 33 H 1.08998 * 109.47146 * 300.00019 * 8 6 5 34 34 H 1.00901 * 111.00077 * 278.95975 * 9 6 5 35 35 H 1.09001 * 109.47205 * 59.99991 * 10 9 6 36 36 H 1.09002 * 109.47023 * 300.00245 * 10 9 6 37 37 H 1.09001 * 109.46970 * 60.00396 * 13 11 10 38 38 H 1.09003 * 109.46843 * 179.97438 * 13 11 10 39 39 H 1.08990 * 109.47503 * 300.00380 * 13 11 10 40 40 H 1.09004 * 109.47178 * 65.00336 * 14 11 10 41 41 H 1.08993 * 109.47411 * 305.00018 * 14 11 10 42 42 H 0.97000 * 120.00236 * 0.27947 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.3755 2.1144 -1.0549 5 6 2.7713 3.3320 -0.6861 6 6 3.2415 4.4196 -1.6174 7 1 3.4635 3.9903 -2.5944 8 6 2.1448 5.4766 -1.7620 9 7 4.4534 5.0432 -1.0697 10 6 5.2633 5.6465 -2.1365 11 6 6.5143 6.2839 -1.5287 12 1 7.0530 5.5396 -0.9423 13 6 6.1053 7.4478 -0.6238 14 6 7.4182 6.8023 -2.6491 15 6 8.7046 7.3191 -2.0581 16 1 8.8619 7.2811 -0.9903 17 6 9.6808 7.8402 -2.8806 18 7 9.4914 7.8815 -4.1814 19 14 11.2756 8.4801 -2.1482 20 1 12.1554 8.9778 -3.2361 21 1 10.9778 9.5888 -1.2061 22 1 11.9613 7.3825 -1.4201 23 7 2.6904 3.4286 0.6149 24 7 2.2056 2.1968 1.0839 25 1 2.0337 1.9530 2.0070 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.9227 5.9058 -0.7850 32 1 2.4850 6.2634 -2.4353 33 1 1.2455 5.0138 -2.1685 34 1 4.2215 5.7245 -0.3625 35 1 4.6783 6.4103 -2.6490 36 1 5.5581 4.8759 -2.8488 37 1 5.4613 7.0785 0.1744 38 1 6.9965 7.9017 -0.1904 39 1 5.5666 8.1921 -1.2101 40 1 6.9126 7.6088 -3.1800 41 1 7.6373 5.9914 -3.3436 42 1 8.6634 7.5490 -4.5618 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602577679.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:27 Heat of formation + Delta-G solvation = 28.224928 kcal Electronic energy + Delta-G solvation = -19858.211449 eV Core-core repulsion = 16872.743107 eV Total energy + Delta-G solvation = -2985.468342 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.18059 -39.00470 -36.73497 -35.10341 -34.31783 -33.33272 -31.22069 -30.21955 -28.38580 -26.88002 -25.45150 -25.16286 -24.08638 -21.70877 -21.28148 -20.78089 -18.96394 -18.80945 -17.04239 -16.65736 -16.21437 -15.81579 -15.66279 -15.46185 -15.23061 -15.03179 -14.86447 -14.18789 -13.75164 -13.49884 -13.47340 -13.21150 -13.19080 -13.03891 -12.84342 -12.51673 -12.46421 -12.41296 -11.98971 -11.95592 -11.85287 -11.62079 -11.32072 -11.10568 -11.07958 -10.59868 -10.50971 -10.47932 -9.47892 -8.64178 -6.32880 0.60249 1.52565 1.61320 1.72408 1.79590 1.80365 2.58273 2.75089 3.19790 3.31556 3.60737 3.78665 4.01202 4.07560 4.15349 4.19888 4.28996 4.34678 4.37380 4.57802 4.60371 4.70681 4.76920 4.80884 4.92226 4.97597 5.02275 5.04939 5.07395 5.24013 5.26136 5.30449 5.32255 5.37693 5.48499 5.63812 5.92430 6.09260 6.21358 6.23683 6.36975 6.63928 7.10424 7.47576 8.76728 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.038227 B = 0.003048 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.297678 B = 9184.129620 C = 9299.914398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.044 4.044 3 C 0.287 3.713 4 N -0.571 5.571 5 C 0.235 3.765 6 C 0.174 3.826 7 H 0.097 0.903 8 C -0.165 4.165 9 N -0.683 5.683 10 C 0.080 3.920 11 C -0.068 4.068 12 H 0.050 0.950 13 C -0.125 4.125 14 C 0.017 3.983 15 C -0.605 4.605 16 H 0.050 0.950 17 C -0.043 4.043 18 N -0.942 5.942 19 Si 1.115 2.885 20 H -0.284 1.284 21 H -0.268 1.268 22 H -0.271 1.271 23 N -0.325 5.325 24 N -0.476 5.476 25 H 0.453 0.547 26 H 0.093 0.907 27 H 0.059 0.941 28 H 0.046 0.954 29 H 0.104 0.896 30 H 0.118 0.882 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.349 0.651 35 H 0.038 0.962 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.044 0.956 39 H 0.045 0.955 40 H -0.009 1.009 41 H -0.017 1.017 42 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.864 -14.633 11.256 27.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.083 4.083 3 C 0.009 3.991 4 N -0.301 5.301 5 C -0.049 4.049 6 C 0.062 3.938 7 H 0.115 0.885 8 C -0.225 4.225 9 N -0.316 5.316 10 C -0.049 4.049 11 C -0.087 4.087 12 H 0.068 0.932 13 C -0.183 4.183 14 C -0.020 4.020 15 C -0.643 4.643 16 H 0.069 0.931 17 C -0.239 4.239 18 N -0.580 5.580 19 Si 0.937 3.063 20 H -0.210 1.210 21 H -0.193 1.193 22 H -0.197 1.197 23 N -0.154 5.154 24 N -0.196 5.196 25 H 0.302 0.698 26 H 0.112 0.888 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.122 0.878 30 H 0.136 0.864 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.170 0.830 35 H 0.056 0.944 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.009 0.991 41 H 0.002 0.998 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -18.861 -13.982 10.931 25.898 hybrid contribution -1.940 -0.137 0.382 1.982 sum -20.801 -14.119 11.313 27.568 Atomic orbital electron populations 1.21732 0.92205 1.04120 1.02099 1.20429 0.97472 0.83769 1.06671 1.25125 0.94403 0.97304 0.82256 1.70298 1.23563 1.04830 1.31395 1.24166 0.96894 0.93499 0.90332 1.19691 0.89568 0.90351 0.94229 0.88530 1.22346 0.98716 0.98481 1.02911 1.60290 1.19023 1.37943 1.14301 1.21889 0.93460 0.96784 0.92764 1.20884 0.94364 0.96793 0.96686 0.93183 1.21631 1.00550 0.97344 0.98734 1.19170 0.94687 0.93877 0.94279 1.22431 1.03190 1.43487 0.95201 0.93132 1.27386 1.06437 0.95288 0.94836 1.70912 1.27999 1.46451 1.12596 0.82958 0.71617 0.76868 0.74871 1.20964 1.19333 1.19683 1.77910 1.22389 1.02639 1.12485 1.47936 1.50844 1.09595 1.11208 0.69838 0.88781 0.92147 0.93458 0.87801 0.86384 0.91864 0.90795 0.91024 0.82997 0.94424 0.92284 0.91738 0.93722 0.93565 0.99070 0.99839 0.93600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.89 71.98 0.71 -0.32 16 2 C -0.04 -0.42 6.56 29.85 0.20 -0.22 16 3 C 0.29 5.66 7.49 138.22 1.04 6.70 16 4 N -0.57 -15.76 11.19 -179.73 -2.01 -17.77 16 5 C 0.23 6.88 6.99 138.64 0.97 7.84 16 6 C 0.17 4.93 3.13 44.17 0.14 5.06 16 7 H 0.10 2.83 7.80 -2.39 -0.02 2.81 16 8 C -0.16 -3.81 9.14 71.98 0.66 -3.15 16 9 N -0.68 -21.57 6.21 -495.46 -3.08 -24.65 16 10 C 0.08 2.84 4.94 86.30 0.43 3.27 16 11 C -0.07 -2.91 2.55 -10.79 -0.03 -2.94 16 12 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 13 C -0.13 -4.76 8.77 71.98 0.63 -4.13 16 14 C 0.02 0.93 3.76 29.85 0.11 1.04 16 15 C -0.61 -35.32 8.41 25.60 0.22 -35.11 16 16 H 0.05 2.88 7.06 -2.91 -0.02 2.86 16 17 C -0.04 -2.54 5.46 84.65 0.46 -2.08 16 18 N -0.94 -59.97 13.65 21.45 0.29 -59.67 16 19 Si 1.12 51.74 29.90 68.60 2.05 53.79 16 20 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 21 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 22 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 23 N -0.33 -9.05 12.78 -51.33 -0.66 -9.71 16 24 N -0.48 -9.25 7.45 -50.71 -0.38 -9.62 16 25 H 0.45 5.10 8.96 -213.09 -1.91 3.19 16 26 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 27 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 28 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 29 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.06 1.44 8.13 -2.39 -0.02 1.42 16 32 H 0.07 1.64 7.45 -2.39 -0.02 1.62 16 33 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.35 10.52 6.73 -89.69 -0.60 9.92 16 35 H 0.04 1.27 7.44 -2.39 -0.02 1.25 16 36 H 0.06 2.21 8.06 -2.39 -0.02 2.19 16 37 H 0.06 2.05 6.68 -2.39 -0.02 2.04 16 38 H 0.04 1.85 6.95 -2.39 -0.02 1.84 16 39 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 40 H -0.01 -0.50 8.01 -2.39 -0.02 -0.52 16 41 H -0.02 -0.96 8.00 -2.39 -0.02 -0.98 16 42 H 0.25 16.40 7.22 -92.71 -0.67 15.73 16 Total: -1.00 -74.92 343.22 0.35 -74.57 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: -1.40 Total: 17.11 kcal Atomic # 6 Polarization: -29.57 SS G_CDS: 5.53 Total: -24.04 kcal Atomic # 7 Polarization: -115.59 SS G_CDS: -5.83 Total: -121.42 kcal Atomic # 14 Polarization: 51.74 SS G_CDS: 2.05 Total: 53.79 kcal Total: -74.92 0.35 -74.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602577679.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.793 kcal (2) G-P(sol) polarization free energy of solvation -74.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds