Wall clock time and date at job start Mon Mar 30 2020 00:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.46820 * 2 1 4 4 N 1.30836 * 125.96173 * 264.99737 * 3 2 1 5 5 C 1.33234 * 109.82969 * 179.97438 * 4 3 2 6 6 C 1.50704 * 125.52922 * 180.02562 * 5 4 3 7 7 H 1.08999 * 109.46361 * 344.99624 * 6 5 4 8 8 C 1.52998 * 109.47463 * 104.99909 * 6 5 4 9 9 N 1.46897 * 109.46934 * 225.00230 * 6 5 4 10 10 C 1.46905 * 111.00138 * 155.00008 * 9 6 5 11 11 C 1.52999 * 109.47028 * 179.97438 * 10 9 6 12 12 H 1.08996 * 109.46929 * 304.98924 * 11 10 9 13 13 C 1.52997 * 109.47317 * 64.99820 * 11 10 9 14 14 C 1.53006 * 109.46623 * 184.99640 * 11 10 9 15 15 C 1.50703 * 109.46967 * 174.99771 * 14 11 10 16 16 H 1.07996 * 119.99755 * 0.02562 * 15 14 11 17 17 C 1.37876 * 120.00135 * 179.97438 * 15 14 11 18 18 N 1.31510 * 119.99855 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 119.99716 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47438 * 89.99972 * 19 17 15 21 21 H 1.48502 * 109.46801 * 209.99792 * 19 17 15 22 22 H 1.48503 * 109.47368 * 329.99562 * 19 17 15 23 23 N 1.30713 * 108.94756 * 0.26648 * 5 4 3 24 24 N 1.34424 * 125.96295 * 84.97694 * 3 2 1 25 25 H 0.97008 * 126.81993 * 0.02562 * 24 3 2 26 26 H 1.08998 * 109.47423 * 299.99872 * 1 2 3 27 27 H 1.09003 * 109.47610 * 60.00101 * 1 2 3 28 28 H 1.09001 * 109.47048 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46961 * 240.00187 * 2 1 3 30 30 H 1.08993 * 109.47143 * 119.99769 * 2 1 3 31 31 H 1.08992 * 109.47065 * 180.02562 * 8 6 5 32 32 H 1.09004 * 109.46776 * 300.00361 * 8 6 5 33 33 H 1.08999 * 109.47040 * 59.99894 * 8 6 5 34 34 H 1.00906 * 110.99758 * 278.94882 * 9 6 5 35 35 H 1.08994 * 109.47305 * 59.99331 * 10 9 6 36 36 H 1.08998 * 109.46287 * 299.99779 * 10 9 6 37 37 H 1.09002 * 109.47153 * 299.99641 * 13 11 10 38 38 H 1.09001 * 109.46832 * 179.97438 * 13 11 10 39 39 H 1.09004 * 109.47261 * 59.99813 * 13 11 10 40 40 H 1.09001 * 109.47326 * 294.99995 * 14 11 10 41 41 H 1.09000 * 109.46904 * 55.00348 * 14 11 10 42 42 H 0.97002 * 119.99949 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3754 2.1145 -1.0550 5 6 2.7710 3.3322 -0.6862 6 6 3.2411 4.4197 -1.6176 7 1 3.4633 3.9903 -2.5945 8 6 2.1444 5.4766 -1.7624 9 7 4.4530 5.0434 -1.0697 10 6 5.2629 5.6468 -2.1366 11 6 6.5132 6.2854 -1.5284 12 1 6.2193 6.9929 -0.7531 13 6 7.3963 5.1960 -0.9168 14 6 7.2929 7.0206 -2.6206 15 6 8.4564 7.7514 -2.0017 16 1 8.6234 7.6967 -0.9361 17 6 9.3085 8.4891 -2.7960 18 7 10.3236 9.1273 -2.2558 19 14 9.0200 8.5832 -4.6391 20 1 8.1371 9.7376 -4.9438 21 1 10.3202 8.7572 -5.3353 22 1 8.3737 7.3295 -5.1037 23 7 2.6901 3.4289 0.6148 24 7 2.2055 2.1969 1.0838 25 1 2.0337 1.9531 2.0069 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 2.4843 6.2629 -2.4363 32 1 1.2451 5.0137 -2.1688 33 1 1.9222 5.9058 -0.7854 34 1 4.2210 5.7248 -0.3626 35 1 4.6779 6.4104 -2.6491 36 1 5.5578 4.8761 -2.8487 37 1 6.8409 4.6723 -0.1388 38 1 8.2873 5.6510 -0.4840 39 1 7.6902 4.4886 -1.6923 40 1 7.6628 6.3004 -3.3504 41 1 6.6367 7.7360 -3.1164 42 1 10.9228 9.6466 -2.8145 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602577681.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:32 Heat of formation + Delta-G solvation = 58.612670 kcal Electronic energy + Delta-G solvation = -19878.118207 eV Core-core repulsion = 16893.967577 eV Total energy + Delta-G solvation = -2984.150630 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.25086 -37.55402 -35.17039 -34.17437 -32.61286 -32.03508 -30.25966 -29.22955 -27.21485 -25.34566 -24.73403 -23.83461 -21.98937 -20.87106 -20.19777 -18.99031 -17.99950 -16.72437 -15.90829 -15.29870 -15.05322 -14.83408 -14.65107 -14.47390 -14.02457 -13.45036 -13.05873 -12.98416 -12.74022 -12.49060 -12.24539 -12.07067 -11.91052 -11.64595 -11.58246 -11.48993 -11.37725 -10.90574 -10.67455 -10.33980 -10.17108 -10.09535 -9.87732 -9.60627 -9.60173 -9.33683 -9.00947 -8.47007 -8.18158 -5.97414 -3.94013 1.50245 2.50568 2.78693 3.34927 3.42440 3.46682 3.66112 4.33137 4.41433 4.51169 4.58823 4.71330 4.88464 5.04426 5.12374 5.23380 5.31900 5.36272 5.47297 5.55941 5.64803 5.68686 5.73976 5.85566 5.99531 6.10455 6.18389 6.36347 6.37654 6.48541 6.65543 6.88192 6.92485 7.10386 7.19239 7.27336 7.35393 7.53594 7.63845 7.87818 8.04373 8.62661 9.08802 9.65590 11.16110 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.041220 B = 0.003186 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.119774 B = 8787.596139 C = 8982.183565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.046 4.046 3 C 0.279 3.721 4 N -0.536 5.536 5 C 0.250 3.750 6 C 0.175 3.825 7 H 0.103 0.897 8 C -0.175 4.175 9 N -0.677 5.677 10 C 0.063 3.937 11 C -0.073 4.073 12 H 0.060 0.940 13 C -0.124 4.124 14 C -0.009 4.009 15 C -0.511 4.511 16 H 0.073 0.927 17 C 0.064 3.936 18 N -0.906 5.906 19 Si 0.878 3.122 20 H -0.279 1.279 21 H -0.289 1.289 22 H -0.265 1.265 23 N -0.297 5.297 24 N -0.487 5.487 25 H 0.437 0.563 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.346 0.654 35 H 0.028 0.972 36 H 0.068 0.932 37 H 0.043 0.957 38 H 0.058 0.942 39 H 0.038 0.962 40 H 0.016 0.984 41 H 0.009 0.991 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.482 -17.427 4.526 28.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.086 4.086 3 C 0.000 4.000 4 N -0.265 5.265 5 C -0.034 4.034 6 C 0.062 3.938 7 H 0.121 0.879 8 C -0.235 4.235 9 N -0.308 5.308 10 C -0.066 4.066 11 C -0.092 4.092 12 H 0.078 0.922 13 C -0.181 4.181 14 C -0.047 4.047 15 C -0.549 4.549 16 H 0.092 0.908 17 C -0.137 4.137 18 N -0.546 5.546 19 Si 0.706 3.294 20 H -0.205 1.205 21 H -0.215 1.215 22 H -0.190 1.190 23 N -0.125 5.125 24 N -0.204 5.204 25 H 0.282 0.718 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.121 0.879 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.165 0.835 35 H 0.047 0.953 36 H 0.087 0.913 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.058 0.942 40 H 0.034 0.966 41 H 0.027 0.973 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -20.741 -17.335 4.501 27.404 hybrid contribution -0.679 0.615 -0.494 1.041 sum -21.421 -16.721 4.007 27.468 Atomic orbital electron populations 1.21752 0.93317 1.02831 1.02752 1.20164 0.96745 0.86572 1.05111 1.24308 0.96339 0.96142 0.83175 1.70313 1.22014 1.04651 1.29555 1.24151 0.96184 0.92992 0.90061 1.19687 0.89742 0.89835 0.94551 0.87882 1.22456 0.99168 0.99146 1.02771 1.60355 1.17711 1.38063 1.14676 1.22239 0.94459 0.97047 0.92808 1.20998 0.92966 0.96543 0.98666 0.92152 1.21592 0.99433 0.97498 0.99623 1.19620 0.95552 0.95096 0.94450 1.21141 1.09068 1.28542 0.96160 0.90844 1.25034 0.94995 0.95210 0.98433 1.69918 1.16185 1.32782 1.35676 0.86801 0.77436 0.78891 0.86281 1.20457 1.21535 1.18999 1.78046 1.21360 1.00513 1.12590 1.48027 1.51539 1.10665 1.10200 0.71823 0.92638 0.91663 0.91051 0.87880 0.89452 0.91139 0.91987 0.91940 0.83478 0.95344 0.91303 0.93778 0.92287 0.94243 0.96554 0.97315 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.89 37.16 0.37 -0.31 16 2 C -0.05 -0.26 6.56 -27.88 -0.18 -0.45 16 3 C 0.28 2.86 7.49 -155.69 -1.17 1.70 16 4 N -0.54 -7.30 11.19 -8.16 -0.09 -7.39 16 5 C 0.25 3.58 6.99 -156.86 -1.10 2.48 16 6 C 0.18 2.37 3.13 -68.87 -0.22 2.16 16 7 H 0.10 1.41 7.80 -51.93 -0.40 1.00 16 8 C -0.18 -2.02 9.14 37.16 0.34 -1.68 16 9 N -0.68 -10.22 5.67 -107.95 -0.61 -10.83 16 10 C 0.06 1.04 4.87 -3.82 -0.02 1.02 16 11 C -0.07 -1.46 2.48 -90.62 -0.22 -1.69 16 12 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 13 C -0.12 -2.49 8.89 37.16 0.33 -2.16 16 14 C -0.01 -0.22 3.52 -27.88 -0.10 -0.32 16 15 C -0.51 -14.65 8.96 -34.44 -0.31 -14.96 16 16 H 0.07 2.26 7.30 -52.49 -0.38 1.88 16 17 C 0.06 1.88 5.47 -17.82 -0.10 1.79 16 18 N -0.91 -28.35 13.96 55.43 0.77 -27.58 16 19 Si 0.88 22.08 27.47 -169.99 -4.67 17.41 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 23 N -0.30 -4.15 12.78 32.42 0.41 -3.73 16 24 N -0.49 -4.96 7.45 32.62 0.24 -4.72 16 25 H 0.44 2.82 8.96 -182.33 -1.63 1.18 16 26 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.78 7.45 -51.93 -0.39 0.39 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 34 H 0.35 5.14 8.47 -39.29 -0.33 4.81 16 35 H 0.03 0.45 7.44 -51.93 -0.39 0.06 16 36 H 0.07 1.15 8.05 -51.93 -0.42 0.73 16 37 H 0.04 0.82 7.75 -51.93 -0.40 0.42 16 38 H 0.06 1.30 6.95 -51.93 -0.36 0.94 16 39 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 41 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 42 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 343.19 15.07 5.17 5.17 Total: -1.00 -33.93 343.19 -9.59 -43.52 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -8.45 Total: 0.57 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: -2.37 Total: -12.43 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: 0.73 Total: -54.25 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.67 Total: 17.41 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.93 -9.59 -43.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602577681.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.131 kcal (2) G-P(sol) polarization free energy of solvation -33.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds