Wall clock time and date at job start Mon Mar 30 2020 00:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.46820 * 2 1 4 4 N 1.30836 * 125.96173 * 264.99737 * 3 2 1 5 5 C 1.33234 * 109.82969 * 179.97438 * 4 3 2 6 6 C 1.50704 * 125.52922 * 180.02562 * 5 4 3 7 7 H 1.08999 * 109.46361 * 344.99624 * 6 5 4 8 8 C 1.52998 * 109.47463 * 104.99909 * 6 5 4 9 9 N 1.46897 * 109.46934 * 225.00230 * 6 5 4 10 10 C 1.46905 * 111.00138 * 155.00008 * 9 6 5 11 11 C 1.52999 * 109.47028 * 179.97438 * 10 9 6 12 12 H 1.08996 * 109.46929 * 304.98924 * 11 10 9 13 13 C 1.52997 * 109.47317 * 64.99820 * 11 10 9 14 14 C 1.53006 * 109.46623 * 184.99640 * 11 10 9 15 15 C 1.50703 * 109.46967 * 174.99771 * 14 11 10 16 16 H 1.07996 * 119.99755 * 0.02562 * 15 14 11 17 17 C 1.37876 * 120.00135 * 179.97438 * 15 14 11 18 18 N 1.31510 * 119.99855 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 119.99716 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47438 * 89.99972 * 19 17 15 21 21 H 1.48502 * 109.46801 * 209.99792 * 19 17 15 22 22 H 1.48503 * 109.47368 * 329.99562 * 19 17 15 23 23 N 1.30713 * 108.94756 * 0.26648 * 5 4 3 24 24 N 1.34424 * 125.96295 * 84.97694 * 3 2 1 25 25 H 0.97008 * 126.81993 * 0.02562 * 24 3 2 26 26 H 1.08998 * 109.47423 * 299.99872 * 1 2 3 27 27 H 1.09003 * 109.47610 * 60.00101 * 1 2 3 28 28 H 1.09001 * 109.47048 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46961 * 240.00187 * 2 1 3 30 30 H 1.08993 * 109.47143 * 119.99769 * 2 1 3 31 31 H 1.08992 * 109.47065 * 180.02562 * 8 6 5 32 32 H 1.09004 * 109.46776 * 300.00361 * 8 6 5 33 33 H 1.08999 * 109.47040 * 59.99894 * 8 6 5 34 34 H 1.00906 * 110.99758 * 278.94882 * 9 6 5 35 35 H 1.08994 * 109.47305 * 59.99331 * 10 9 6 36 36 H 1.08998 * 109.46287 * 299.99779 * 10 9 6 37 37 H 1.09002 * 109.47153 * 299.99641 * 13 11 10 38 38 H 1.09001 * 109.46832 * 179.97438 * 13 11 10 39 39 H 1.09004 * 109.47261 * 59.99813 * 13 11 10 40 40 H 1.09001 * 109.47326 * 294.99995 * 14 11 10 41 41 H 1.09000 * 109.46904 * 55.00348 * 14 11 10 42 42 H 0.97002 * 119.99949 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3754 2.1145 -1.0550 5 6 2.7710 3.3322 -0.6862 6 6 3.2411 4.4197 -1.6176 7 1 3.4633 3.9903 -2.5945 8 6 2.1444 5.4766 -1.7624 9 7 4.4530 5.0434 -1.0697 10 6 5.2629 5.6468 -2.1366 11 6 6.5132 6.2854 -1.5284 12 1 6.2193 6.9929 -0.7531 13 6 7.3963 5.1960 -0.9168 14 6 7.2929 7.0206 -2.6206 15 6 8.4564 7.7514 -2.0017 16 1 8.6234 7.6967 -0.9361 17 6 9.3085 8.4891 -2.7960 18 7 10.3236 9.1273 -2.2558 19 14 9.0200 8.5832 -4.6391 20 1 8.1371 9.7376 -4.9438 21 1 10.3202 8.7572 -5.3353 22 1 8.3737 7.3295 -5.1037 23 7 2.6901 3.4289 0.6148 24 7 2.2055 2.1969 1.0838 25 1 2.0337 1.9531 2.0069 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 2.4843 6.2629 -2.4363 32 1 1.2451 5.0137 -2.1688 33 1 1.9222 5.9058 -0.7854 34 1 4.2210 5.7248 -0.3626 35 1 4.6779 6.4104 -2.6491 36 1 5.5578 4.8761 -2.8487 37 1 6.8409 4.6723 -0.1388 38 1 8.2873 5.6510 -0.4840 39 1 7.6902 4.4886 -1.6923 40 1 7.6628 6.3004 -3.3504 41 1 6.6367 7.7360 -3.1164 42 1 10.9228 9.6466 -2.8145 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602577681.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:31 Heat of formation + Delta-G solvation = 35.214820 kcal Electronic energy + Delta-G solvation = -19879.132814 eV Core-core repulsion = 16893.967577 eV Total energy + Delta-G solvation = -2985.165237 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.13267 -38.83306 -36.56605 -34.98607 -34.26004 -33.34027 -31.33603 -30.30524 -29.05099 -26.74105 -25.37494 -24.98507 -23.68285 -21.65182 -21.33953 -20.50336 -19.00335 -18.74556 -16.82781 -16.50233 -16.20200 -16.10405 -15.84944 -15.46268 -15.11291 -14.85686 -14.71218 -14.15872 -13.90211 -13.55061 -13.44359 -13.16922 -13.10336 -12.93039 -12.80029 -12.44906 -12.44025 -12.31774 -12.11575 -11.95886 -11.78943 -11.45399 -11.24537 -11.08359 -11.03701 -10.99229 -10.71469 -10.45433 -9.35757 -8.24148 -6.26455 0.65031 1.37680 1.39968 1.51959 1.76520 1.84855 2.39888 2.80911 3.11193 3.38261 3.65700 3.84141 4.06619 4.14940 4.20194 4.31100 4.33413 4.41594 4.46717 4.64002 4.73547 4.76355 4.89180 4.95397 4.96574 4.99827 5.06793 5.11868 5.12717 5.30390 5.33424 5.39402 5.40746 5.43396 5.55433 5.71362 5.74350 6.04095 6.24686 6.36233 6.43620 6.81251 7.14952 7.36902 8.92776 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.041220 B = 0.003186 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.119774 B = 8787.596139 C = 8982.183565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.043 4.043 3 C 0.287 3.713 4 N -0.569 5.569 5 C 0.236 3.764 6 C 0.176 3.824 7 H 0.102 0.898 8 C -0.166 4.166 9 N -0.682 5.682 10 C 0.077 3.923 11 C -0.068 4.068 12 H 0.050 0.950 13 C -0.114 4.114 14 C -0.006 4.006 15 C -0.518 4.518 16 H 0.032 0.968 17 C -0.001 4.001 18 N -0.956 5.956 19 Si 0.950 3.050 20 H -0.267 1.267 21 H -0.287 1.287 22 H -0.245 1.245 23 N -0.327 5.327 24 N -0.478 5.478 25 H 0.452 0.548 26 H 0.058 0.942 27 H 0.047 0.953 28 H 0.093 0.907 29 H 0.104 0.896 30 H 0.117 0.883 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.347 0.653 35 H 0.041 0.959 36 H 0.071 0.929 37 H 0.057 0.943 38 H 0.027 0.973 39 H 0.042 0.958 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.655 -19.129 3.471 30.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.083 4.083 3 C 0.008 3.992 4 N -0.299 5.299 5 C -0.048 4.048 6 C 0.064 3.936 7 H 0.120 0.880 8 C -0.225 4.225 9 N -0.313 5.313 10 C -0.052 4.052 11 C -0.087 4.087 12 H 0.069 0.931 13 C -0.172 4.172 14 C -0.044 4.044 15 C -0.556 4.556 16 H 0.051 0.949 17 C -0.197 4.197 18 N -0.597 5.597 19 Si 0.773 3.227 20 H -0.192 1.192 21 H -0.213 1.213 22 H -0.169 1.169 23 N -0.156 5.156 24 N -0.197 5.197 25 H 0.300 0.700 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.112 0.888 29 H 0.123 0.877 30 H 0.135 0.865 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.166 0.834 35 H 0.060 0.940 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.046 0.954 39 H 0.061 0.939 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.947 -19.063 3.479 30.034 hybrid contribution -0.014 1.067 -0.010 1.067 sum -22.961 -17.996 3.468 29.378 Atomic orbital electron populations 1.21732 0.92305 1.04070 1.02073 1.20418 0.97394 0.83877 1.06637 1.25105 0.94482 0.97274 0.82318 1.70301 1.23554 1.04849 1.31238 1.24248 0.96742 0.93518 0.90302 1.19691 0.89521 0.90148 0.94272 0.88038 1.22355 0.98783 0.98626 1.02776 1.60255 1.18817 1.37925 1.14336 1.21965 0.93061 0.97274 0.92853 1.20868 0.94244 0.96201 0.97411 0.93104 1.21477 0.98326 0.97427 0.99942 1.19568 0.94347 0.95135 0.95367 1.21457 1.10708 1.28811 0.94627 0.94931 1.26028 0.94623 0.94845 1.04186 1.70081 1.17605 1.34153 1.37865 0.85666 0.77672 0.80020 0.79328 1.19183 1.21347 1.16853 1.77937 1.22441 1.02542 1.12676 1.47953 1.50910 1.09681 1.11190 0.69962 0.92258 0.93401 0.88847 0.87719 0.86524 0.90524 0.91257 0.92236 0.83412 0.94033 0.91005 0.92439 0.95400 0.93868 0.96261 0.96253 0.92728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 9.89 71.98 0.71 -0.25 16 2 C -0.04 -0.38 6.56 29.85 0.20 -0.19 16 3 C 0.29 5.38 7.49 138.23 1.04 6.41 16 4 N -0.57 -14.86 11.19 -179.72 -2.01 -16.87 16 5 C 0.24 6.52 6.99 138.63 0.97 7.49 16 6 C 0.18 4.55 3.13 44.17 0.14 4.69 16 7 H 0.10 2.63 7.80 -2.39 -0.02 2.61 16 8 C -0.17 -3.55 9.14 71.98 0.66 -2.89 16 9 N -0.68 -19.74 5.67 -495.46 -2.81 -22.55 16 10 C 0.08 2.42 4.87 86.30 0.42 2.84 16 11 C -0.07 -2.71 2.48 -10.79 -0.03 -2.74 16 12 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 13 C -0.11 -4.61 8.89 71.98 0.64 -3.97 16 14 C -0.01 -0.30 3.52 29.85 0.10 -0.19 16 15 C -0.52 -30.30 8.96 25.60 0.23 -30.07 16 16 H 0.03 2.11 7.30 -2.91 -0.02 2.09 16 17 C 0.00 -0.06 5.47 84.66 0.46 0.40 16 18 N -0.96 -61.32 13.96 21.45 0.30 -61.02 16 19 Si 0.95 45.06 27.47 68.60 1.88 46.95 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 21 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 22 H -0.25 -10.75 6.54 99.48 0.65 -10.10 16 23 N -0.33 -8.83 12.78 -51.33 -0.66 -9.48 16 24 N -0.48 -9.00 7.45 -50.70 -0.38 -9.38 16 25 H 0.45 4.99 8.96 -213.09 -1.91 3.08 16 26 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 27 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 29 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.08 1.53 7.45 -2.39 -0.02 1.52 16 32 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.06 1.30 8.13 -2.39 -0.02 1.29 16 34 H 0.35 9.98 8.47 -89.69 -0.76 9.22 16 35 H 0.04 1.21 7.44 -2.39 -0.02 1.19 16 36 H 0.07 2.24 8.05 -2.39 -0.02 2.22 16 37 H 0.06 2.13 7.75 -2.39 -0.02 2.11 16 38 H 0.03 1.25 6.95 -2.39 -0.02 1.24 16 39 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 40 H 0.02 0.90 7.20 -2.39 -0.02 0.88 16 41 H 0.02 0.87 7.57 -2.39 -0.02 0.85 16 42 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 Total: -1.00 -74.47 343.19 0.15 -74.32 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -1.72 Total: 16.48 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: 5.54 Total: -18.45 kcal Atomic # 7 Polarization: -113.74 SS G_CDS: -5.55 Total: -119.30 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.88 Total: 46.95 kcal Total: -74.47 0.15 -74.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602577681.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.533 kcal (2) G-P(sol) polarization free energy of solvation -74.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds