Wall clock time and date at job start Mon Mar 30 2020 00:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50699 * 109.47078 * 119.99663 * 2 1 3 5 5 N 1.30719 * 125.52791 * 299.69229 * 4 2 1 6 6 N 1.40445 * 106.79137 * 179.85924 * 5 4 2 7 7 H 0.97000 * 126.81747 * 180.16338 * 6 5 4 8 8 C 1.34429 * 106.35517 * 0.40019 * 6 5 4 9 9 C 1.50697 * 125.96231 * 179.73355 * 8 6 5 10 10 N 1.46900 * 109.47077 * 95.02701 * 9 8 6 11 11 C 1.46893 * 111.00143 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.47422 * 179.97438 * 11 10 9 13 13 H 1.08996 * 109.46860 * 305.00015 * 12 11 10 14 14 C 1.53001 * 109.46879 * 64.99920 * 12 11 10 15 15 C 1.52993 * 109.47467 * 184.99842 * 12 11 10 16 16 C 1.50696 * 109.47302 * 175.00096 * 15 12 11 17 17 H 1.07998 * 120.00297 * 0.02562 * 16 15 12 18 18 C 1.37884 * 120.00099 * 179.97438 * 16 15 12 19 19 N 1.31510 * 120.00089 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 119.99847 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47134 * 90.00208 * 20 18 16 22 22 H 1.48497 * 109.46838 * 209.99734 * 20 18 16 23 23 H 1.48492 * 109.47235 * 329.99729 * 20 18 16 24 24 N 1.30831 * 108.07618 * 359.75866 * 8 6 5 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 29 29 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 30 30 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 32 32 H 1.08999 * 109.47486 * 215.02704 * 9 8 6 33 33 H 1.09008 * 109.47083 * 335.02813 * 9 8 6 34 34 H 1.00901 * 111.00218 * 303.95508 * 10 9 8 35 35 H 1.09005 * 109.47556 * 300.00074 * 11 10 9 36 36 H 1.09002 * 109.47452 * 59.99686 * 11 10 9 37 37 H 1.08996 * 109.47297 * 60.00362 * 14 12 11 38 38 H 1.09003 * 109.47215 * 180.02562 * 14 12 11 39 39 H 1.09000 * 109.47118 * 299.99637 * 14 12 11 40 40 H 1.09000 * 109.47567 * 295.00281 * 15 12 11 41 41 H 1.09007 * 109.47267 * 54.99813 * 15 12 11 42 42 H 0.97004 * 120.00437 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.7887 -0.3558 2.4649 6 7 2.4400 -1.2868 3.2905 7 1 2.4479 -1.2981 4.2604 8 6 3.0545 -2.1560 2.4695 9 6 3.8896 -3.3361 2.8949 10 7 3.0544 -4.5443 2.9171 11 6 3.8366 -5.7175 3.3289 12 6 2.9347 -6.9534 3.3407 13 1 2.0681 -6.7646 3.9743 14 6 2.4681 -7.2578 1.9158 15 6 3.7158 -8.1496 3.8881 16 6 2.7946 -9.3355 4.0150 17 1 1.7560 -9.2452 3.7331 18 6 3.2780 -10.5362 4.4902 19 7 2.4740 -11.5710 4.6014 20 14 5.0746 -10.6927 4.9772 21 1 5.2303 -10.3462 6.4128 22 1 5.5284 -12.0888 4.7530 23 1 5.8933 -9.7678 4.1531 24 7 2.8016 -1.7982 1.2367 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.6767 1.9563 0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 4.7094 -3.4741 2.1899 33 1 4.2935 -3.1552 3.8910 34 1 2.2512 -4.4178 3.5146 35 1 4.6564 -5.8722 2.6273 36 1 4.2398 -5.5529 4.3281 37 1 3.3347 -7.4466 1.2822 38 1 1.8252 -8.1380 1.9242 39 1 1.9116 -6.4056 1.5258 40 1 4.5308 -8.3940 3.2068 41 1 4.1236 -7.8998 4.8676 42 1 2.8139 -12.4157 4.9360 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602673176.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:34 Heat of formation + Delta-G solvation = 57.689593 kcal Electronic energy + Delta-G solvation = -19610.329904 eV Core-core repulsion = 16626.139246 eV Total energy + Delta-G solvation = -2984.190658 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.32944 -37.28264 -35.96988 -34.28945 -32.36280 -32.16531 -30.73936 -27.76846 -27.41812 -26.61118 -24.47770 -23.87459 -22.01199 -21.14766 -19.78749 -19.23163 -18.08127 -16.81210 -15.95113 -15.75969 -15.09255 -14.94114 -14.63161 -14.26891 -14.01553 -13.55623 -13.31091 -13.10698 -12.83607 -12.44659 -12.27962 -11.95294 -11.82877 -11.70683 -11.68700 -11.51798 -11.20656 -10.96487 -10.74693 -10.42779 -10.20404 -10.12066 -9.95310 -9.76298 -9.68435 -9.43056 -9.08864 -8.52999 -8.42956 -6.03068 -4.00293 1.38521 2.41577 2.71406 3.29541 3.37758 3.40762 3.68245 4.25944 4.32352 4.45342 4.56485 4.78019 4.87617 5.03383 5.20956 5.29813 5.32243 5.37394 5.51456 5.56339 5.58065 5.63507 5.68573 5.95600 5.96287 5.99756 6.10206 6.22758 6.30246 6.34580 6.54925 6.76920 6.84094 6.97572 7.04972 7.16065 7.23264 7.33607 7.46310 7.80954 7.97444 8.55994 9.02758 9.59459 11.10353 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.042503 B = 0.002936 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.616154 B = 9533.391044 C = 9832.027772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.002 4.002 3 C -0.142 4.142 4 C 0.232 3.768 5 N -0.314 5.314 6 N -0.484 5.484 7 H 0.438 0.562 8 C 0.295 3.705 9 C 0.135 3.865 10 N -0.675 5.675 11 C 0.062 3.938 12 C -0.073 4.073 13 H 0.059 0.941 14 C -0.125 4.125 15 C -0.009 4.009 16 C -0.513 4.513 17 H 0.074 0.926 18 C 0.064 3.936 19 N -0.905 5.905 20 Si 0.878 3.122 21 H -0.279 1.279 22 H -0.289 1.289 23 H -0.266 1.266 24 N -0.520 5.520 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.098 0.902 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.110 0.890 33 H 0.052 0.948 34 H 0.340 0.660 35 H 0.073 0.927 36 H 0.028 0.972 37 H 0.041 0.959 38 H 0.059 0.941 39 H 0.045 0.955 40 H 0.017 0.983 41 H 0.008 0.992 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.218 24.324 -5.266 24.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.023 4.023 3 C -0.200 4.200 4 C -0.051 4.051 5 N -0.143 5.143 6 N -0.202 5.202 7 H 0.284 0.716 8 C 0.015 3.985 9 C 0.004 3.996 10 N -0.308 5.308 11 C -0.066 4.066 12 C -0.092 4.092 13 H 0.078 0.922 14 C -0.183 4.183 15 C -0.047 4.047 16 C -0.551 4.551 17 H 0.092 0.908 18 C -0.136 4.136 19 N -0.544 5.544 20 Si 0.706 3.294 21 H -0.205 1.205 22 H -0.215 1.215 23 H -0.190 1.190 24 N -0.248 5.248 25 H 0.077 0.923 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.116 0.884 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.128 0.872 33 H 0.070 0.930 34 H 0.158 0.842 35 H 0.092 0.908 36 H 0.047 0.953 37 H 0.060 0.940 38 H 0.078 0.922 39 H 0.064 0.936 40 H 0.035 0.965 41 H 0.026 0.974 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.988 24.469 -6.038 25.222 hybrid contribution 1.146 -0.303 2.148 2.453 sum 2.134 24.166 -3.890 24.570 Atomic orbital electron populations 1.21824 0.93238 1.02561 1.02512 1.19530 0.96143 0.95069 0.91549 1.21821 1.01248 0.94397 1.02568 1.24257 0.94977 0.92324 0.93562 1.77916 1.20399 1.13656 1.02308 1.48061 1.39876 1.21869 1.10382 0.71634 1.24297 0.94667 0.93364 0.86146 1.20429 0.94030 0.84634 1.00548 1.60434 1.09848 1.01592 1.58878 1.22257 0.96806 0.89546 0.97968 1.21012 0.97510 0.92969 0.97723 0.92220 1.21605 1.00642 1.00676 0.95358 1.19614 0.96231 0.93671 0.95157 1.21122 0.97506 0.93678 1.42832 0.90821 1.25038 0.97428 0.95853 0.95307 1.69913 1.35378 1.01985 1.47111 0.86801 0.86211 0.77265 0.79114 1.20490 1.21463 1.19018 1.70407 1.19567 1.14439 1.20378 0.92257 0.91508 0.92013 0.88368 0.92001 0.92543 0.91499 0.87225 0.93047 0.84243 0.90816 0.95339 0.94024 0.92202 0.93620 0.96463 0.97381 0.92809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.18 37.16 0.34 -0.87 16 2 C 0.00 -0.02 3.39 -91.77 -0.31 -0.33 16 3 C -0.14 -1.11 9.18 37.16 0.34 -0.76 16 4 C 0.23 2.91 6.65 -156.85 -1.04 1.87 16 5 N -0.31 -3.90 12.80 32.42 0.41 -3.48 16 6 N -0.48 -5.06 7.45 32.62 0.24 -4.82 16 7 H 0.44 3.13 8.96 -182.33 -1.63 1.49 16 8 C 0.29 3.47 7.75 -155.70 -1.21 2.27 16 9 C 0.14 1.41 6.31 -4.98 -0.03 1.38 16 10 N -0.68 -8.64 5.94 -115.06 -0.68 -9.32 16 11 C 0.06 0.92 5.07 -3.83 -0.02 0.90 16 12 C -0.07 -1.37 2.48 -90.62 -0.22 -1.60 16 13 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 14 C -0.13 -2.38 8.89 37.16 0.33 -2.05 16 15 C -0.01 -0.20 3.52 -27.89 -0.10 -0.30 16 16 C -0.51 -14.30 8.96 -34.44 -0.31 -14.61 16 17 H 0.07 2.21 7.30 -52.49 -0.38 1.83 16 18 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 19 N -0.90 -27.79 13.96 55.43 0.77 -27.01 16 20 Si 0.88 21.50 27.47 -169.99 -4.67 16.83 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 24 N -0.52 -7.23 11.19 -8.16 -0.09 -7.32 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 34 H 0.34 4.15 8.72 -39.29 -0.34 3.81 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 1.27 6.95 -51.93 -0.36 0.90 16 39 H 0.04 0.80 7.75 -51.93 -0.40 0.39 16 40 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 41 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 42 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 345.00 15.07 5.20 5.20 Total: -1.00 -32.64 345.00 -9.70 -42.33 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -8.55 Total: -0.08 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -2.33 Total: -12.34 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: 0.66 Total: -51.95 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.64 -9.70 -42.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602673176.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.024 kcal (2) G-P(sol) polarization free energy of solvation -32.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds