Wall clock time and date at job start Mon Mar 30 2020 00:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50699 * 109.47078 * 119.99663 * 2 1 3 5 5 N 1.30719 * 125.52791 * 299.69229 * 4 2 1 6 6 N 1.40445 * 106.79137 * 179.85924 * 5 4 2 7 7 H 0.97000 * 126.81747 * 180.16338 * 6 5 4 8 8 C 1.34429 * 106.35517 * 0.40019 * 6 5 4 9 9 C 1.50697 * 125.96231 * 179.73355 * 8 6 5 10 10 N 1.46900 * 109.47077 * 95.02701 * 9 8 6 11 11 C 1.46893 * 111.00143 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.47422 * 179.97438 * 11 10 9 13 13 H 1.08996 * 109.46860 * 305.00015 * 12 11 10 14 14 C 1.53001 * 109.46879 * 64.99920 * 12 11 10 15 15 C 1.52993 * 109.47467 * 184.99842 * 12 11 10 16 16 C 1.50696 * 109.47302 * 175.00096 * 15 12 11 17 17 H 1.07998 * 120.00297 * 0.02562 * 16 15 12 18 18 C 1.37884 * 120.00099 * 179.97438 * 16 15 12 19 19 N 1.31510 * 120.00089 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 119.99847 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47134 * 90.00208 * 20 18 16 22 22 H 1.48497 * 109.46838 * 209.99734 * 20 18 16 23 23 H 1.48492 * 109.47235 * 329.99729 * 20 18 16 24 24 N 1.30831 * 108.07618 * 359.75866 * 8 6 5 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 29 29 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 30 30 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 32 32 H 1.08999 * 109.47486 * 215.02704 * 9 8 6 33 33 H 1.09008 * 109.47083 * 335.02813 * 9 8 6 34 34 H 1.00901 * 111.00218 * 303.95508 * 10 9 8 35 35 H 1.09005 * 109.47556 * 300.00074 * 11 10 9 36 36 H 1.09002 * 109.47452 * 59.99686 * 11 10 9 37 37 H 1.08996 * 109.47297 * 60.00362 * 14 12 11 38 38 H 1.09003 * 109.47215 * 180.02562 * 14 12 11 39 39 H 1.09000 * 109.47118 * 299.99637 * 14 12 11 40 40 H 1.09000 * 109.47567 * 295.00281 * 15 12 11 41 41 H 1.09007 * 109.47267 * 54.99813 * 15 12 11 42 42 H 0.97004 * 120.00437 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.7887 -0.3558 2.4649 6 7 2.4400 -1.2868 3.2905 7 1 2.4479 -1.2981 4.2604 8 6 3.0545 -2.1560 2.4695 9 6 3.8896 -3.3361 2.8949 10 7 3.0544 -4.5443 2.9171 11 6 3.8366 -5.7175 3.3289 12 6 2.9347 -6.9534 3.3407 13 1 2.0681 -6.7646 3.9743 14 6 2.4681 -7.2578 1.9158 15 6 3.7158 -8.1496 3.8881 16 6 2.7946 -9.3355 4.0150 17 1 1.7560 -9.2452 3.7331 18 6 3.2780 -10.5362 4.4902 19 7 2.4740 -11.5710 4.6014 20 14 5.0746 -10.6927 4.9772 21 1 5.2303 -10.3462 6.4128 22 1 5.5284 -12.0888 4.7530 23 1 5.8933 -9.7678 4.1531 24 7 2.8016 -1.7982 1.2367 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.6767 1.9563 0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 4.7094 -3.4741 2.1899 33 1 4.2935 -3.1552 3.8910 34 1 2.2512 -4.4178 3.5146 35 1 4.6564 -5.8722 2.6273 36 1 4.2398 -5.5529 4.3281 37 1 3.3347 -7.4466 1.2822 38 1 1.8252 -8.1380 1.9242 39 1 1.9116 -6.4056 1.5258 40 1 4.5308 -8.3940 3.2068 41 1 4.1236 -7.8998 4.8676 42 1 2.8139 -12.4157 4.9360 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602673176.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:34 Heat of formation + Delta-G solvation = 35.438331 kcal Electronic energy + Delta-G solvation = -19611.294792 eV Core-core repulsion = 16626.139246 eV Total energy + Delta-G solvation = -2985.155545 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.20865 -38.50250 -36.80043 -35.69397 -34.10395 -33.23092 -31.79345 -29.50330 -28.04751 -27.82832 -25.84448 -24.70076 -23.64397 -22.04381 -20.77145 -20.56448 -19.03294 -18.83853 -16.92429 -16.77316 -16.35175 -15.95662 -15.82470 -15.46842 -15.22242 -14.83773 -14.54441 -14.17780 -13.99889 -13.79937 -13.51796 -13.08541 -13.04530 -12.82257 -12.79827 -12.47650 -12.33952 -12.19741 -12.09883 -11.90705 -11.78160 -11.43601 -11.24677 -11.09678 -11.05341 -11.02356 -10.71385 -10.55369 -9.39804 -8.23973 -6.26542 0.50303 1.37788 1.40688 1.52142 1.63510 1.80939 2.39933 2.87552 3.11570 3.30824 3.53550 3.75998 4.06544 4.14040 4.20175 4.27042 4.35798 4.49337 4.50229 4.60882 4.79566 4.86809 4.90353 4.93704 4.94333 4.96621 5.03982 5.13300 5.24977 5.29021 5.32843 5.41797 5.42493 5.48740 5.56674 5.72135 5.75011 5.93208 6.13485 6.31842 6.37713 6.81898 7.09305 7.36992 8.92977 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.042503 B = 0.002936 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.616154 B = 9533.391044 C = 9832.027772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.006 4.006 3 C -0.134 4.134 4 C 0.221 3.779 5 N -0.330 5.330 6 N -0.473 5.473 7 H 0.452 0.548 8 C 0.294 3.706 9 C 0.141 3.859 10 N -0.686 5.686 11 C 0.078 3.922 12 C -0.070 4.070 13 H 0.049 0.951 14 C -0.117 4.117 15 C -0.007 4.007 16 C -0.519 4.519 17 H 0.031 0.969 18 C -0.002 4.002 19 N -0.957 5.957 20 Si 0.950 3.050 21 H -0.267 1.267 22 H -0.290 1.290 23 H -0.242 1.242 24 N -0.554 5.554 25 H 0.044 0.956 26 H 0.090 0.910 27 H 0.055 0.945 28 H 0.098 0.902 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.089 0.911 32 H 0.112 0.888 33 H 0.085 0.915 34 H 0.343 0.657 35 H 0.079 0.921 36 H 0.046 0.954 37 H 0.045 0.955 38 H 0.023 0.977 39 H 0.059 0.941 40 H 0.021 0.979 41 H 0.020 0.980 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.217 26.381 -5.033 27.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.027 4.027 3 C -0.193 4.193 4 C -0.062 4.062 5 N -0.160 5.160 6 N -0.193 5.193 7 H 0.301 0.699 8 C 0.014 3.986 9 C 0.010 3.990 10 N -0.319 5.319 11 C -0.051 4.051 12 C -0.089 4.089 13 H 0.068 0.932 14 C -0.174 4.174 15 C -0.045 4.045 16 C -0.557 4.557 17 H 0.050 0.950 18 C -0.198 4.198 19 N -0.598 5.598 20 Si 0.774 3.226 21 H -0.192 1.192 22 H -0.216 1.216 23 H -0.166 1.166 24 N -0.283 5.283 25 H 0.063 0.937 26 H 0.109 0.891 27 H 0.074 0.926 28 H 0.117 0.883 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.108 0.892 32 H 0.130 0.870 33 H 0.103 0.897 34 H 0.161 0.839 35 H 0.097 0.903 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.043 0.957 39 H 0.078 0.922 40 H 0.039 0.961 41 H 0.039 0.961 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.984 26.562 -5.789 27.348 hybrid contribution 0.401 -0.931 2.052 2.289 sum 3.386 25.631 -3.738 26.122 Atomic orbital electron populations 1.21783 0.92509 1.01834 1.03386 1.19707 0.96719 0.95815 0.90480 1.21770 1.00788 0.93323 1.03381 1.24793 0.94736 0.92223 0.94427 1.77861 1.21039 1.14505 1.02575 1.47999 1.39084 1.21159 1.11053 0.69947 1.24482 0.94520 0.93655 0.85920 1.20483 0.93228 0.82937 1.02389 1.60287 1.10270 1.02102 1.59225 1.21950 0.95713 0.88176 0.99247 1.20883 0.97584 0.93673 0.96757 0.93207 1.21502 1.00257 0.99635 0.96028 1.19571 0.95603 0.93256 0.96042 1.21482 0.96661 0.95796 1.41759 0.95049 1.26056 1.02824 0.95411 0.95523 1.70085 1.38001 1.02805 1.48924 0.85654 0.79894 0.77552 0.79504 1.19227 1.21581 1.16560 1.70395 1.20698 1.15419 1.21796 0.93726 0.89125 0.92609 0.88340 0.92612 0.93152 0.89208 0.87017 0.89726 0.83901 0.90274 0.93624 0.93597 0.95731 0.92198 0.96112 0.96149 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.18 71.98 0.66 -1.51 16 2 C -0.01 -0.11 3.39 -11.54 -0.04 -0.15 16 3 C -0.13 -1.90 9.18 71.98 0.66 -1.24 16 4 C 0.22 5.37 6.65 138.63 0.92 6.29 16 5 N -0.33 -7.86 12.80 -51.33 -0.66 -8.52 16 6 N -0.47 -9.05 7.45 -50.71 -0.38 -9.43 16 7 H 0.45 5.47 8.96 -213.10 -1.91 3.56 16 8 C 0.29 6.36 7.75 138.23 1.07 7.43 16 9 C 0.14 2.49 6.31 85.56 0.54 3.03 16 10 N -0.69 -15.73 5.94 -517.93 -3.08 -18.81 16 11 C 0.08 2.04 5.07 86.30 0.44 2.48 16 12 C -0.07 -2.54 2.48 -10.79 -0.03 -2.57 16 13 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 14 C -0.12 -4.40 8.89 71.98 0.64 -3.76 16 15 C -0.01 -0.30 3.52 29.84 0.10 -0.20 16 16 C -0.52 -29.44 8.96 25.60 0.23 -29.21 16 17 H 0.03 1.98 7.30 -2.91 -0.02 1.96 16 18 C 0.00 -0.14 5.47 84.66 0.46 0.32 16 19 N -0.96 -60.44 13.96 21.45 0.30 -60.14 16 20 Si 0.95 43.71 27.47 68.60 1.88 45.59 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 22 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 23 H -0.24 -10.16 6.54 99.48 0.65 -9.51 16 24 N -0.55 -14.79 11.19 -179.73 -2.01 -16.80 16 25 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 28 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.75 16 31 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.34 7.58 8.72 -89.69 -0.78 6.80 16 35 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 36 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.02 1.06 6.95 -2.39 -0.02 1.04 16 39 H 0.06 2.05 7.75 -2.39 -0.02 2.04 16 40 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 41 H 0.02 0.86 7.57 -2.38 -0.02 0.84 16 42 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -72.05 345.00 -0.02 -72.07 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -1.74 Total: 15.13 kcal Atomic # 6 Polarization: -24.75 SS G_CDS: 5.66 Total: -19.09 kcal Atomic # 7 Polarization: -107.88 SS G_CDS: -5.82 Total: -113.70 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.88 Total: 45.59 kcal Total: -72.05 -0.02 -72.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602673176.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.506 kcal (2) G-P(sol) polarization free energy of solvation -72.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds