Wall clock time and date at job start Mon Mar 30 2020 01:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52997 * 109.47529 * 2 1 4 4 N 1.46898 * 109.46965 * 119.99980 * 2 1 3 5 5 C 1.46906 * 111.00279 * 85.00016 * 4 2 1 6 6 C 1.53117 * 109.52353 * 205.00019 * 5 4 2 7 7 C 1.53035 * 109.27840 * 182.43597 * 6 5 4 8 8 N 1.46856 * 109.52061 * 59.18074 * 7 6 5 9 9 C 1.46892 * 110.99848 * 174.16078 * 8 7 6 10 10 C 1.53001 * 109.47129 * 175.87806 * 9 8 7 11 11 C 1.50697 * 115.55019 * 291.33138 * 10 9 8 12 12 H 1.08005 * 120.00341 * 144.62872 * 11 10 9 13 13 C 1.37888 * 120.00151 * 324.63561 * 11 10 9 14 14 N 1.31518 * 119.99523 * 347.01909 * 13 11 10 15 15 Si 1.86796 * 119.99948 * 167.02332 * 13 11 10 16 16 H 1.48491 * 109.47326 * 60.00039 * 15 13 11 17 17 H 1.48505 * 109.46886 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47351 * 299.99435 * 15 13 11 19 19 C 1.53001 * 117.49930 * 145.66430 * 10 9 8 20 20 C 1.53001 * 117.49792 * 77.00332 * 10 9 8 21 21 C 1.46849 * 111.19731 * 298.25979 * 8 7 6 22 22 C 1.53030 * 109.52458 * 61.74205 * 21 8 7 23 23 H 1.09003 * 109.47725 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47675 * 300.00549 * 1 2 3 25 25 H 1.09008 * 109.47105 * 59.99917 * 1 2 3 26 26 H 1.09001 * 109.47668 * 239.99973 * 2 1 3 27 27 H 1.08997 * 109.47650 * 179.97438 * 3 2 1 28 28 H 1.08995 * 109.47275 * 300.00230 * 3 2 1 29 29 H 1.09006 * 109.46979 * 59.99731 * 3 2 1 30 30 H 1.00904 * 111.00307 * 321.04447 * 4 2 1 31 31 H 1.09001 * 109.51742 * 325.12542 * 5 4 2 32 32 H 1.09007 * 109.50069 * 62.50126 * 6 5 4 33 33 H 1.09000 * 109.50453 * 302.37982 * 6 5 4 34 34 H 1.09006 * 109.46445 * 299.16651 * 7 6 5 35 35 H 1.08994 * 109.46474 * 179.19635 * 7 6 5 36 36 H 1.09000 * 109.47311 * 55.87731 * 9 8 7 37 37 H 1.09006 * 109.47348 * 295.87634 * 9 8 7 38 38 H 0.97001 * 119.99515 * 185.01764 * 14 13 11 39 39 H 1.08998 * 117.50105 * 359.97438 * 19 10 9 40 40 H 1.09000 * 117.49730 * 145.02323 * 19 10 9 41 41 H 1.09002 * 117.49414 * 214.98288 * 20 10 9 42 42 H 1.08996 * 117.49748 * 359.97438 * 20 10 9 43 43 H 1.08997 * 109.46013 * 181.75803 * 21 8 7 44 44 H 1.09005 * 109.46017 * 301.72182 * 21 8 7 45 45 H 1.09000 * 109.50496 * 180.87908 * 22 21 8 46 46 H 1.09002 * 109.50548 * 60.75705 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0195 -0.6925 1.1994 5 6 2.0823 -2.1438 0.9807 6 6 1.9769 -2.8689 2.3252 7 6 2.1039 -4.3769 2.0973 8 7 3.3953 -4.6702 1.4626 9 6 3.6116 -6.1190 1.3544 10 6 4.9149 -6.3851 0.5983 11 6 4.9028 -6.0245 -0.8648 12 1 5.7937 -5.6308 -1.3314 13 6 3.7542 -6.1971 -1.6079 14 7 2.7570 -6.9040 -1.1224 15 14 3.6146 -5.4272 -3.3041 16 1 4.6909 -5.9579 -4.1787 17 1 2.2916 -5.7593 -3.8911 18 1 3.7505 -3.9528 -3.1912 19 6 5.7396 -7.6033 1.0189 20 6 6.2266 -6.1933 1.3623 21 6 3.5004 -4.0228 0.1487 22 6 3.4150 -2.5043 0.3185 23 1 -0.3635 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.4494 -0.4721 2.0023 31 1 1.2591 -2.4509 0.3357 32 1 1.0116 -2.6500 2.7820 33 1 2.7769 -2.5318 2.9842 34 1 1.2954 -4.7157 1.4493 35 1 2.0435 -4.8952 3.0542 36 1 2.7797 -6.5714 0.8146 37 1 3.6757 -6.5525 2.3525 38 1 1.9792 -7.0867 -1.6725 39 1 5.3539 -8.2150 1.8344 40 1 6.2737 -8.1436 0.2373 41 1 7.0808 -5.8066 0.8065 42 1 6.1610 -5.8772 2.4034 43 1 4.4543 -4.2839 -0.3095 44 1 2.6855 -4.3632 -0.4902 45 1 3.4774 -2.0248 -0.6584 46 1 4.2377 -2.1614 0.9460 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602787287.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:59 Heat of formation + Delta-G solvation = 28.174628 kcal Electronic energy + Delta-G solvation = -22033.652479 eV Core-core repulsion = 19151.722300 eV Total energy + Delta-G solvation = -2881.930179 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -38.87751 -37.22262 -35.51159 -32.55781 -32.16324 -30.01229 -28.79136 -27.14631 -25.86034 -24.80612 -22.42021 -21.48922 -21.00388 -20.37062 -19.06347 -18.74987 -16.25593 -15.70839 -15.04666 -14.85510 -14.56039 -14.03646 -13.97214 -13.82465 -13.34809 -12.99112 -12.87187 -12.61404 -12.41675 -12.24561 -11.79143 -11.61414 -11.36228 -11.25793 -11.17186 -10.90943 -10.82974 -10.72140 -10.53664 -10.35747 -10.19892 -10.01786 -9.72136 -9.69106 -9.19088 -8.87320 -8.60322 -8.17858 -8.15846 -7.03455 -6.01894 -4.03816 3.22169 3.27788 3.32070 4.29158 4.29537 4.86853 4.91184 5.05252 5.12427 5.26332 5.33212 5.48546 5.58255 5.67405 5.70159 5.77860 5.81333 5.86616 5.97334 6.07133 6.13093 6.21510 6.27144 6.29808 6.36197 6.47103 6.52419 6.55213 6.65801 6.67453 6.78142 6.84968 6.92131 7.05344 7.19995 7.28300 7.35891 7.43563 7.54489 7.60866 7.70394 8.01396 8.35940 8.41425 8.46273 8.82500 9.42687 10.87910 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.018720 B = 0.006692 C = 0.005660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.402517 B = 4182.800033 C = 4945.617072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.075 3.925 3 C -0.137 4.137 4 N -0.680 5.680 5 C 0.087 3.913 6 C -0.111 4.111 7 C 0.058 3.942 8 N -0.525 5.525 9 C 0.079 3.921 10 C 0.055 3.945 11 C -0.483 4.483 12 H 0.063 0.937 13 C 0.076 3.924 14 N -0.874 5.874 15 Si 0.878 3.122 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.269 1.269 19 C -0.204 4.204 20 C -0.198 4.198 21 C 0.042 3.958 22 C -0.105 4.105 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.077 0.923 27 H 0.061 0.939 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.333 0.667 31 H 0.035 0.965 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.022 0.978 35 H 0.060 0.940 36 H 0.096 0.904 37 H 0.028 0.972 38 H 0.262 0.738 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.134 0.866 44 H 0.026 0.974 45 H 0.048 0.952 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.380 10.304 3.564 11.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.035 4.035 3 C -0.194 4.194 4 N -0.310 5.310 5 C -0.022 4.022 6 C -0.149 4.149 7 C -0.071 4.071 8 N -0.249 5.249 9 C -0.048 4.048 10 C 0.055 3.945 11 C -0.520 4.520 12 H 0.081 0.919 13 C -0.127 4.127 14 N -0.511 5.511 15 Si 0.705 3.295 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.194 1.194 19 C -0.243 4.243 20 C -0.236 4.236 21 C -0.085 4.085 22 C -0.144 4.144 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.151 0.849 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.040 0.960 35 H 0.079 0.921 36 H 0.114 0.886 37 H 0.046 0.954 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.151 0.849 44 H 0.045 0.955 45 H 0.067 0.933 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.582 10.583 3.675 11.762 hybrid contribution -1.842 -0.293 -1.353 2.305 sum -5.424 10.290 2.321 11.862 Atomic orbital electron populations 1.22511 0.97803 1.01763 1.01922 1.21582 0.92120 0.95487 0.94300 1.21742 1.01834 0.95055 1.00814 1.60718 1.56774 1.08450 1.05073 1.21662 0.98147 0.85817 0.96590 1.21692 1.00640 0.95848 0.96703 1.21924 0.92195 0.94302 0.98705 1.61982 1.28122 1.11999 1.22830 1.21895 1.00567 0.86165 0.96204 1.18928 0.87333 0.94943 0.93331 1.20385 0.96903 1.42132 0.92549 0.91920 1.24938 0.95521 0.94685 0.97581 1.69761 1.08259 1.37007 1.36052 0.86862 0.77461 0.80730 0.84453 1.20098 1.21230 1.19396 1.22935 1.08288 0.91012 1.02056 1.22770 1.01009 1.00201 0.99595 1.23019 1.05820 0.89859 0.89832 1.21748 0.96014 0.97635 0.98962 0.92831 0.92692 0.92371 0.90488 0.91977 0.92960 0.93043 0.84873 0.94734 0.93158 0.90729 0.95979 0.92114 0.88625 0.95371 0.92777 0.91968 0.90691 0.91128 0.91202 0.84877 0.95545 0.93332 0.91384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.00 9.14 37.15 0.34 -1.66 16 2 C 0.08 0.95 3.01 -67.72 -0.20 0.74 16 3 C -0.14 -1.48 9.52 37.16 0.35 -1.13 16 4 N -0.68 -9.36 6.06 -99.61 -0.60 -9.96 16 5 C 0.09 1.41 2.37 -67.59 -0.16 1.25 16 6 C -0.11 -1.74 5.36 -26.65 -0.14 -1.88 16 7 C 0.06 1.08 5.46 -3.83 -0.02 1.06 16 8 N -0.52 -11.24 4.76 -234.67 -1.12 -12.36 16 9 C 0.08 1.85 4.82 -3.83 -0.02 1.83 16 10 C 0.06 1.34 1.62 -155.66 -0.25 1.09 16 11 C -0.48 -12.43 5.91 -34.44 -0.20 -12.63 16 12 H 0.06 1.63 7.85 -52.48 -0.41 1.22 16 13 C 0.08 1.93 3.00 -17.81 -0.05 1.88 16 14 N -0.87 -23.17 10.53 55.43 0.58 -22.59 16 15 Si 0.88 20.16 29.13 -169.99 -4.95 15.20 16 16 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 17 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 19 C -0.20 -4.67 9.91 -26.69 -0.26 -4.93 16 20 C -0.20 -4.39 9.96 -26.69 -0.27 -4.65 16 21 C 0.04 0.93 3.76 -3.84 -0.01 0.91 16 22 C -0.11 -1.98 5.58 -26.65 -0.15 -2.12 16 23 H 0.05 0.65 7.43 -51.93 -0.39 0.26 16 24 H 0.05 0.55 8.13 -51.93 -0.42 0.12 16 25 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 26 H 0.08 1.10 7.16 -51.93 -0.37 0.73 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.33 4.11 8.10 -39.29 -0.32 3.79 16 31 H 0.03 0.60 7.12 -51.93 -0.37 0.23 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 1.06 8.12 -51.93 -0.42 0.64 16 36 H 0.10 2.49 5.31 -51.93 -0.28 2.21 16 37 H 0.03 0.64 8.07 -51.93 -0.42 0.22 16 38 H 0.26 6.75 8.32 -40.82 -0.34 6.41 16 39 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.07 1.72 8.14 -51.93 -0.42 1.30 16 41 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 42 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 43 H 0.13 3.25 4.35 -51.93 -0.23 3.02 16 44 H 0.03 0.64 6.47 -51.93 -0.34 0.30 16 45 H 0.05 0.91 7.49 -51.93 -0.39 0.52 16 46 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 342.85 15.07 5.17 5.17 Total: -1.00 -25.41 342.85 -10.53 -35.95 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -8.56 Total: 8.84 kcal Atomic # 6 Polarization: -19.19 SS G_CDS: -1.06 Total: -20.25 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: -1.14 Total: -44.91 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -4.95 Total: 15.20 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -25.41 -10.53 -35.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602787287.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.121 kcal (2) G-P(sol) polarization free energy of solvation -25.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds