Wall clock time and date at job start Mon Mar 30 2020 01:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52997 * 109.47529 * 2 1 4 4 N 1.46898 * 109.46965 * 119.99980 * 2 1 3 5 5 C 1.46906 * 111.00279 * 85.00016 * 4 2 1 6 6 C 1.53117 * 109.52353 * 205.00019 * 5 4 2 7 7 C 1.53035 * 109.27840 * 182.43597 * 6 5 4 8 8 N 1.46856 * 109.52061 * 59.18074 * 7 6 5 9 9 C 1.46892 * 110.99848 * 174.16078 * 8 7 6 10 10 C 1.53001 * 109.47129 * 175.87806 * 9 8 7 11 11 C 1.50697 * 115.55019 * 291.33138 * 10 9 8 12 12 H 1.08005 * 120.00341 * 144.62872 * 11 10 9 13 13 C 1.37888 * 120.00151 * 324.63561 * 11 10 9 14 14 N 1.31518 * 119.99523 * 347.01909 * 13 11 10 15 15 Si 1.86796 * 119.99948 * 167.02332 * 13 11 10 16 16 H 1.48491 * 109.47326 * 60.00039 * 15 13 11 17 17 H 1.48505 * 109.46886 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47351 * 299.99435 * 15 13 11 19 19 C 1.53001 * 117.49930 * 145.66430 * 10 9 8 20 20 C 1.53001 * 117.49792 * 77.00332 * 10 9 8 21 21 C 1.46849 * 111.19731 * 298.25979 * 8 7 6 22 22 C 1.53030 * 109.52458 * 61.74205 * 21 8 7 23 23 H 1.09003 * 109.47725 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47675 * 300.00549 * 1 2 3 25 25 H 1.09008 * 109.47105 * 59.99917 * 1 2 3 26 26 H 1.09001 * 109.47668 * 239.99973 * 2 1 3 27 27 H 1.08997 * 109.47650 * 179.97438 * 3 2 1 28 28 H 1.08995 * 109.47275 * 300.00230 * 3 2 1 29 29 H 1.09006 * 109.46979 * 59.99731 * 3 2 1 30 30 H 1.00904 * 111.00307 * 321.04447 * 4 2 1 31 31 H 1.09001 * 109.51742 * 325.12542 * 5 4 2 32 32 H 1.09007 * 109.50069 * 62.50126 * 6 5 4 33 33 H 1.09000 * 109.50453 * 302.37982 * 6 5 4 34 34 H 1.09006 * 109.46445 * 299.16651 * 7 6 5 35 35 H 1.08994 * 109.46474 * 179.19635 * 7 6 5 36 36 H 1.09000 * 109.47311 * 55.87731 * 9 8 7 37 37 H 1.09006 * 109.47348 * 295.87634 * 9 8 7 38 38 H 0.97001 * 119.99515 * 185.01764 * 14 13 11 39 39 H 1.08998 * 117.50105 * 359.97438 * 19 10 9 40 40 H 1.09000 * 117.49730 * 145.02323 * 19 10 9 41 41 H 1.09002 * 117.49414 * 214.98288 * 20 10 9 42 42 H 1.08996 * 117.49748 * 359.97438 * 20 10 9 43 43 H 1.08997 * 109.46013 * 181.75803 * 21 8 7 44 44 H 1.09005 * 109.46017 * 301.72182 * 21 8 7 45 45 H 1.09000 * 109.50496 * 180.87908 * 22 21 8 46 46 H 1.09002 * 109.50548 * 60.75705 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0195 -0.6925 1.1994 5 6 2.0823 -2.1438 0.9807 6 6 1.9769 -2.8689 2.3252 7 6 2.1039 -4.3769 2.0973 8 7 3.3953 -4.6702 1.4626 9 6 3.6116 -6.1190 1.3544 10 6 4.9149 -6.3851 0.5983 11 6 4.9028 -6.0245 -0.8648 12 1 5.7937 -5.6308 -1.3314 13 6 3.7542 -6.1971 -1.6079 14 7 2.7570 -6.9040 -1.1224 15 14 3.6146 -5.4272 -3.3041 16 1 4.6909 -5.9579 -4.1787 17 1 2.2916 -5.7593 -3.8911 18 1 3.7505 -3.9528 -3.1912 19 6 5.7396 -7.6033 1.0189 20 6 6.2266 -6.1933 1.3623 21 6 3.5004 -4.0228 0.1487 22 6 3.4150 -2.5043 0.3185 23 1 -0.3635 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.4494 -0.4721 2.0023 31 1 1.2591 -2.4509 0.3357 32 1 1.0116 -2.6500 2.7820 33 1 2.7769 -2.5318 2.9842 34 1 1.2954 -4.7157 1.4493 35 1 2.0435 -4.8952 3.0542 36 1 2.7797 -6.5714 0.8146 37 1 3.6757 -6.5525 2.3525 38 1 1.9792 -7.0867 -1.6725 39 1 5.3539 -8.2150 1.8344 40 1 6.2737 -8.1436 0.2373 41 1 7.0808 -5.8066 0.8065 42 1 6.1610 -5.8772 2.4034 43 1 4.4543 -4.2839 -0.3095 44 1 2.6855 -4.3632 -0.4902 45 1 3.4774 -2.0248 -0.6584 46 1 4.2377 -2.1614 0.9460 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602787287.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:58 Heat of formation + Delta-G solvation = 13.502696 kcal Electronic energy + Delta-G solvation = -22034.288702 eV Core-core repulsion = 19151.722300 eV Total energy + Delta-G solvation = -2882.566402 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.40113 -38.71123 -36.98682 -34.37337 -33.67498 -31.58454 -30.09294 -28.01040 -27.81135 -26.45144 -23.92013 -23.03032 -22.79138 -21.45374 -20.82322 -20.39672 -18.15227 -17.01154 -16.74483 -16.20558 -16.00664 -15.70787 -15.66842 -15.01192 -14.80501 -14.59924 -14.31911 -13.93011 -13.81936 -13.41769 -13.19563 -13.11460 -13.01008 -12.71340 -12.58027 -12.52885 -12.29165 -12.20728 -12.01223 -11.94983 -11.79438 -11.63016 -11.33494 -11.18373 -11.06814 -10.72452 -10.45926 -10.05568 -9.31781 -8.84257 -7.97635 -6.04852 1.35410 1.39293 1.43990 2.36993 2.97766 3.15442 3.35659 3.80374 3.88454 4.01794 4.07463 4.24483 4.30841 4.34585 4.41228 4.51904 4.62863 4.70512 4.72092 4.78145 4.81456 4.83547 4.87978 4.92642 4.97841 4.99603 5.04657 5.08823 5.10946 5.20669 5.23603 5.25272 5.30440 5.39260 5.43761 5.54964 5.62199 5.63452 5.80785 6.07592 6.17317 6.47361 6.56767 6.60384 6.69352 6.85646 7.42632 8.88829 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.018720 B = 0.006692 C = 0.005660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.402517 B = 4182.800033 C = 4945.617072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.072 3.928 3 C -0.130 4.130 4 N -0.678 5.678 5 C 0.097 3.903 6 C -0.100 4.100 7 C 0.056 3.944 8 N -0.524 5.524 9 C 0.086 3.914 10 C 0.027 3.973 11 C -0.490 4.490 12 H 0.052 0.948 13 C 0.047 3.953 14 N -0.894 5.894 15 Si 0.920 3.080 16 H -0.273 1.273 17 H -0.288 1.288 18 H -0.265 1.265 19 C -0.203 4.203 20 C -0.179 4.179 21 C 0.054 3.946 22 C -0.098 4.098 23 H 0.038 0.962 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.347 0.653 31 H 0.020 0.980 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.004 0.996 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.034 0.966 38 H 0.259 0.741 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.083 0.917 43 H 0.108 0.892 44 H -0.002 1.002 45 H 0.044 0.956 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.851 12.124 4.624 13.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.038 4.038 3 C -0.188 4.188 4 N -0.309 5.309 5 C -0.013 4.013 6 C -0.138 4.138 7 C -0.073 4.073 8 N -0.248 5.248 9 C -0.041 4.041 10 C 0.027 3.973 11 C -0.527 4.527 12 H 0.071 0.929 13 C -0.154 4.154 14 N -0.532 5.532 15 Si 0.746 3.254 16 H -0.198 1.198 17 H -0.213 1.213 18 H -0.190 1.190 19 C -0.242 4.242 20 C -0.217 4.217 21 C -0.074 4.074 22 C -0.136 4.136 23 H 0.057 0.943 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.166 0.834 31 H 0.038 0.962 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.022 0.978 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.052 0.948 38 H 0.068 0.932 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.101 0.899 43 H 0.126 0.874 44 H 0.016 0.984 45 H 0.063 0.937 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.048 12.418 4.741 13.895 hybrid contribution -1.670 -0.862 -1.672 2.515 sum -5.718 11.557 3.069 13.254 Atomic orbital electron populations 1.22435 0.96383 1.01239 1.03298 1.21637 0.93295 0.96095 0.92812 1.21686 1.01106 0.93881 1.02140 1.60627 1.57563 1.06581 1.06137 1.21407 0.95856 0.87636 0.96390 1.21620 1.02446 0.93293 0.96428 1.22034 0.90080 0.96705 0.98462 1.62011 1.29879 1.10664 1.22296 1.21698 0.99268 0.87368 0.95797 1.19058 0.88662 0.96505 0.93100 1.20492 0.96663 1.42007 0.93584 0.92943 1.25345 0.95248 0.94870 0.99912 1.69886 1.08496 1.38039 1.36776 0.86198 0.77218 0.80295 0.81725 1.19829 1.21335 1.18974 1.22933 1.07828 0.91247 1.02191 1.22736 0.99702 0.99302 0.99915 1.22703 1.03142 0.91897 0.89624 1.21613 0.97686 0.95207 0.99120 0.94261 0.91032 0.91313 0.92783 0.93058 0.91580 0.91779 0.83399 0.96158 0.90128 0.90381 0.97789 0.90791 0.91301 0.94776 0.93157 0.90792 0.91338 0.90910 0.89887 0.87416 0.98361 0.93748 0.91604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.46 9.14 71.98 0.66 -2.80 16 2 C 0.07 1.67 3.01 44.91 0.14 1.80 16 3 C -0.13 -2.51 9.52 71.98 0.69 -1.83 16 4 N -0.68 -17.18 6.06 -469.07 -2.84 -20.02 16 5 C 0.10 3.02 2.37 44.99 0.11 3.13 16 6 C -0.10 -2.92 5.36 30.65 0.16 -2.75 16 7 C 0.06 2.04 5.46 86.32 0.47 2.51 16 8 N -0.52 -22.34 4.76 -896.36 -4.27 -26.61 16 9 C 0.09 4.07 4.82 86.31 0.42 4.48 16 10 C 0.03 1.33 1.62 -52.93 -0.09 1.25 16 11 C -0.49 -25.68 5.91 25.60 0.15 -25.53 16 12 H 0.05 2.78 7.85 -2.91 -0.02 2.76 16 13 C 0.05 2.45 3.00 84.66 0.25 2.70 16 14 N -0.89 -48.57 10.53 21.45 0.23 -48.34 16 15 Si 0.92 41.98 29.13 68.60 2.00 43.98 16 16 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 17 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 18 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 19 C -0.20 -9.18 9.91 30.62 0.30 -8.88 16 20 C -0.18 -7.75 9.96 30.62 0.30 -7.44 16 21 C 0.05 2.42 3.76 86.32 0.32 2.75 16 22 C -0.10 -3.65 5.58 30.65 0.17 -3.48 16 23 H 0.04 0.89 7.43 -2.39 -0.02 0.87 16 24 H 0.07 1.18 8.13 -2.39 -0.02 1.16 16 25 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 26 H 0.05 1.51 7.16 -2.39 -0.02 1.49 16 27 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 30 H 0.35 7.40 8.10 -89.69 -0.73 6.68 16 31 H 0.02 0.70 7.12 -2.39 -0.02 0.68 16 32 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 33 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.00 0.15 8.14 -2.38 -0.02 0.14 16 35 H 0.07 2.47 8.12 -2.39 -0.02 2.45 16 36 H 0.07 3.67 5.31 -2.39 -0.01 3.66 16 37 H 0.03 1.53 8.07 -2.38 -0.02 1.51 16 38 H 0.26 13.69 8.32 -92.71 -0.77 12.92 16 39 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 40 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 41 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 42 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 43 H 0.11 5.36 4.35 -2.39 -0.01 5.35 16 44 H 0.00 -0.09 6.47 -2.38 -0.02 -0.11 16 45 H 0.04 1.66 7.49 -2.39 -0.02 1.65 16 46 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -54.63 342.85 -0.63 -55.26 By element: Atomic # 1 Polarization: 29.62 SS G_CDS: 0.20 Total: 29.82 kcal Atomic # 6 Polarization: -38.14 SS G_CDS: 4.06 Total: -34.08 kcal Atomic # 7 Polarization: -88.09 SS G_CDS: -6.89 Total: -94.97 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.00 Total: 43.98 kcal Total: -54.63 -0.63 -55.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602787287.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.762 kcal (2) G-P(sol) polarization free energy of solvation -54.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds