Wall clock time and date at job start Mon Mar 30 2020 01:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46797 * 2 1 4 4 N 1.46899 * 109.47224 * 119.99679 * 2 1 3 5 5 C 1.46900 * 110.99933 * 85.00430 * 4 2 1 6 6 H 1.08996 * 109.50184 * 325.07223 * 5 4 2 7 7 C 1.53110 * 109.50388 * 85.19539 * 5 4 2 8 8 C 1.53127 * 109.16080 * 177.59345 * 7 5 4 9 9 C 1.53041 * 109.27843 * 302.34941 * 8 7 5 10 10 N 1.46848 * 109.52367 * 59.17521 * 9 8 7 11 11 C 1.46901 * 110.99650 * 174.16315 * 10 9 8 12 12 C 1.52999 * 109.46748 * 285.89810 * 11 10 9 13 13 C 1.50702 * 115.54884 * 148.22204 * 12 11 10 14 14 H 1.08008 * 119.99721 * 144.67929 * 13 12 11 15 15 C 1.37874 * 120.00168 * 324.68105 * 13 12 11 16 16 N 1.31516 * 119.99845 * 345.71233 * 15 13 12 17 17 Si 1.86802 * 120.00278 * 165.71010 * 15 13 12 18 18 H 1.48502 * 109.46913 * 60.00168 * 17 15 13 19 19 H 1.48494 * 109.47247 * 179.97438 * 17 15 13 20 20 H 1.48489 * 109.47106 * 300.00079 * 17 15 13 21 21 C 1.52998 * 117.50324 * 2.51042 * 12 11 10 22 22 C 1.52999 * 60.00167 * 252.51165 * 21 12 11 23 23 C 1.46849 * 111.19804 * 298.25551 * 10 9 8 24 24 H 1.08997 * 109.47168 * 300.00037 * 1 2 3 25 25 H 1.08992 * 109.47387 * 60.00198 * 1 2 3 26 26 H 1.09005 * 109.46894 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47168 * 239.99963 * 2 1 3 28 28 H 1.09000 * 109.46904 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47015 * 299.99810 * 3 2 1 30 30 H 1.08997 * 109.47291 * 60.00039 * 3 2 1 31 31 H 1.00902 * 111.00131 * 208.95391 * 4 2 1 32 32 H 1.09000 * 109.52516 * 297.49865 * 7 5 4 33 33 H 1.08997 * 109.52481 * 57.69256 * 7 5 4 34 34 H 1.08997 * 109.50169 * 62.28695 * 8 7 5 35 35 H 1.08995 * 109.50430 * 182.36205 * 8 7 5 36 36 H 1.08996 * 109.45714 * 299.16039 * 9 8 7 37 37 H 1.09000 * 109.45835 * 179.19394 * 9 8 7 38 38 H 1.08996 * 109.47304 * 45.89600 * 11 10 9 39 39 H 1.08999 * 109.46932 * 165.89905 * 11 10 9 40 40 H 0.96995 * 120.00353 * 185.01167 * 16 15 13 41 41 H 1.08997 * 117.49559 * 0.02562 * 21 12 11 42 42 H 1.09000 * 117.49940 * 145.02119 * 21 12 11 43 43 H 1.09003 * 117.49480 * 252.51092 * 22 21 12 44 44 H 1.09005 * 117.51616 * 107.48310 * 22 21 12 45 45 H 1.08999 * 109.45891 * 181.75759 * 23 10 9 46 46 H 1.09000 * 109.46518 * 301.73887 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0825 -2.1437 0.9807 6 1 1.2587 -2.4506 0.3365 7 6 3.4140 -2.5032 0.3157 8 6 3.4970 -4.0228 0.1462 9 6 3.3505 -4.6926 1.5144 10 7 2.0610 -4.3180 2.1087 11 6 1.8251 -5.0512 3.3597 12 6 1.4677 -6.5040 3.0396 13 6 1.9078 -7.5216 4.0603 14 1 1.2911 -8.3849 4.2627 15 6 3.0976 -7.3506 4.7356 16 7 3.9774 -6.4726 4.3057 17 14 3.4600 -8.3659 6.2612 18 1 3.4515 -9.8086 5.9091 19 1 4.7946 -7.9955 6.7967 20 1 2.4224 -8.1012 7.2899 21 6 1.4790 -6.9269 1.5693 22 6 0.1491 -6.7623 2.3076 23 6 1.9772 -2.8679 2.3248 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1299 1.4426 -0.0005 29 1 1.6765 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 2.9173 -0.3306 1.4848 32 1 3.4744 -2.0238 -0.6613 33 1 4.2380 -2.1611 0.9419 34 1 2.6958 -4.3598 -0.5115 35 1 4.4606 -4.2884 -0.2885 36 1 4.1599 -4.3657 2.1672 37 1 3.3948 -5.7752 1.3953 38 1 2.7268 -5.0252 3.9716 39 1 1.0032 -4.5861 3.9039 40 1 4.8436 -6.4032 4.7366 41 1 1.7416 -6.1702 0.8300 42 1 1.8051 -7.9414 1.3399 43 1 -0.3997 -7.6685 2.5640 44 1 -0.4638 -5.8972 2.0543 45 1 1.0239 -2.6253 2.7944 46 1 2.7931 -2.5496 2.9737 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602793040.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:23 Heat of formation + Delta-G solvation = 26.155767 kcal Electronic energy + Delta-G solvation = -21688.279929 eV Core-core repulsion = 18806.262205 eV Total energy + Delta-G solvation = -2882.017724 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.06899 -37.17545 -35.43304 -32.30031 -32.12331 -31.18727 -27.64097 -27.15061 -26.20410 -25.15868 -22.30903 -21.95210 -20.74787 -20.48009 -19.36613 -18.55640 -16.17980 -15.72585 -15.45354 -14.70984 -14.58532 -14.50458 -13.97446 -13.71242 -13.31015 -13.12143 -12.92792 -12.52686 -12.43536 -12.16143 -11.99524 -11.59472 -11.43328 -11.40940 -11.09714 -10.96949 -10.86394 -10.72349 -10.65914 -10.36447 -10.21645 -10.16342 -9.94362 -9.81410 -9.04678 -8.99874 -8.53837 -8.25709 -7.89278 -7.21321 -5.98042 -4.03514 3.28847 3.34395 3.38366 4.10372 4.38048 4.85561 4.90992 5.00168 5.07371 5.19976 5.21487 5.33299 5.44345 5.56536 5.68298 5.71923 5.76089 5.79373 5.84236 5.96607 5.99498 6.08520 6.21667 6.26472 6.27828 6.31742 6.37499 6.44940 6.50219 6.63818 6.76956 6.87014 6.94922 6.96748 7.16690 7.22218 7.28414 7.47230 7.52347 7.61974 7.63067 7.98628 8.15670 8.26318 8.62082 8.92414 9.52623 10.96729 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.029288 B = 0.004687 C = 0.004549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.791776 B = 5972.010042 C = 6154.038931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.079 3.921 3 C -0.153 4.153 4 N -0.683 5.683 5 C 0.094 3.906 6 H 0.081 0.919 7 C -0.144 4.144 8 C -0.115 4.115 9 C 0.064 3.936 10 N -0.535 5.535 11 C 0.076 3.924 12 C 0.056 3.944 13 C -0.486 4.486 14 H 0.059 0.941 15 C 0.069 3.931 16 N -0.876 5.876 17 Si 0.891 3.109 18 H -0.278 1.278 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.198 4.198 22 C -0.206 4.206 23 C 0.072 3.928 24 H 0.060 0.940 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.041 0.959 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.338 0.662 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.030 0.970 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.036 0.964 40 H 0.260 0.740 41 H 0.087 0.913 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.068 0.932 46 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.096 12.217 -8.100 14.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.031 4.031 3 C -0.211 4.211 4 N -0.314 5.314 5 C -0.016 4.016 6 H 0.100 0.900 7 C -0.183 4.183 8 C -0.154 4.154 9 C -0.064 4.064 10 N -0.259 5.259 11 C -0.050 4.050 12 C 0.055 3.945 13 C -0.524 4.524 14 H 0.077 0.923 15 C -0.132 4.132 16 N -0.514 5.514 17 Si 0.718 3.282 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.201 1.201 21 C -0.236 4.236 22 C -0.244 4.244 23 C -0.057 4.057 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.156 0.844 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.048 0.952 37 H 0.113 0.887 38 H 0.119 0.881 39 H 0.055 0.945 40 H 0.071 0.929 41 H 0.105 0.895 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -1.926 12.199 -8.021 14.727 hybrid contribution 1.635 -0.430 0.676 1.821 sum -0.291 11.769 -7.346 13.876 Atomic orbital electron populations 1.21800 0.94673 1.02069 1.01226 1.21464 0.96012 0.93795 0.91790 1.21969 1.00611 0.96178 1.02314 1.60562 1.33146 1.03840 1.33831 1.21609 0.96605 0.86151 0.97280 0.90046 1.22262 0.98436 0.97817 0.99808 1.21601 1.00876 0.93952 0.98969 1.22060 0.89870 1.01826 0.92617 1.61910 1.31753 1.03316 1.28953 1.21930 1.02100 0.91790 0.89215 1.18925 0.93190 0.92515 0.89846 1.20631 1.05272 1.06682 1.19815 0.92312 1.24949 0.95965 0.95249 0.97086 1.69789 1.05590 1.35283 1.40739 0.86678 0.77309 0.80457 0.83713 1.20337 1.21316 1.20149 1.23066 1.00953 0.99952 0.99670 1.22781 0.91443 1.00360 1.09795 1.21858 1.00454 0.88819 0.94547 0.92135 0.93043 0.92544 0.94059 0.92971 0.92227 0.91827 0.84412 0.93148 0.92492 0.91871 0.92475 0.95203 0.88665 0.88106 0.94515 0.92925 0.89507 0.91933 0.91757 0.91399 0.91314 0.95941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.40 37.16 0.35 -1.15 16 2 C 0.08 0.86 3.04 -67.71 -0.21 0.65 16 3 C -0.15 -1.35 9.18 37.16 0.34 -1.01 16 4 N -0.68 -8.62 6.06 -99.66 -0.60 -9.22 16 5 C 0.09 1.37 2.44 -67.63 -0.16 1.20 16 6 H 0.08 1.28 7.12 -51.93 -0.37 0.91 16 7 C -0.14 -2.02 5.24 -26.61 -0.14 -2.16 16 8 C -0.12 -1.84 6.09 -26.64 -0.16 -2.00 16 9 C 0.06 1.27 4.26 -3.83 -0.02 1.26 16 10 N -0.53 -10.78 3.66 -234.67 -0.86 -11.63 16 11 C 0.08 1.80 4.85 -3.82 -0.02 1.78 16 12 C 0.06 1.40 2.14 -155.66 -0.33 1.06 16 13 C -0.49 -13.23 9.03 -34.44 -0.31 -13.54 16 14 H 0.06 1.61 7.86 -52.48 -0.41 1.20 16 15 C 0.07 1.84 5.13 -17.82 -0.09 1.75 16 16 N -0.88 -23.41 10.75 55.43 0.60 -22.81 16 17 Si 0.89 20.69 29.57 -169.99 -5.03 15.67 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 C -0.20 -4.61 8.04 -26.73 -0.21 -4.82 16 22 C -0.21 -4.72 9.94 -26.73 -0.27 -4.98 16 23 C 0.07 1.28 5.04 -3.83 -0.02 1.26 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.68 7.43 -51.93 -0.39 0.29 16 27 H 0.04 0.47 7.15 -51.93 -0.37 0.10 16 28 H 0.05 0.44 8.12 -51.93 -0.42 0.01 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.34 4.01 8.06 -39.29 -0.32 3.70 16 32 H 0.05 0.64 7.48 -51.93 -0.39 0.25 16 33 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.10 2.15 5.53 -51.93 -0.29 1.86 16 38 H 0.10 2.64 4.91 -51.93 -0.26 2.38 16 39 H 0.04 0.86 7.82 -51.93 -0.41 0.45 16 40 H 0.26 6.73 8.32 -40.82 -0.34 6.39 16 41 H 0.09 1.92 5.49 -51.93 -0.28 1.64 16 42 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 43 H 0.06 1.45 8.14 -51.93 -0.42 1.02 16 44 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 45 H 0.07 1.25 7.94 -51.93 -0.41 0.84 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 346.06 15.07 5.22 5.22 Total: -1.00 -26.07 346.06 -10.45 -36.52 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -8.52 Total: 6.97 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: -1.25 Total: -20.71 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: -0.87 Total: -43.67 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.03 Total: 15.67 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -26.07 -10.45 -36.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602793040.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.675 kcal (2) G-P(sol) polarization free energy of solvation -26.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds