Wall clock time and date at job start Mon Mar 30 2020 00:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34778 * 119.99715 * 2 1 4 4 O 1.21278 * 120.00187 * 0.02562 * 3 2 1 5 5 C 1.50708 * 119.99667 * 180.02562 * 3 2 1 6 6 H 1.08996 * 110.66933 * 61.78072 * 5 3 2 7 7 C 1.54887 * 110.75271 * 298.54864 * 5 3 2 8 8 C 1.54267 * 104.18901 * 203.74201 * 7 5 3 9 9 C 1.53876 * 106.60124 * 23.61150 * 8 7 5 10 10 C 1.54265 * 106.63989 * 359.97438 * 9 8 7 11 11 H 1.09002 * 110.48744 * 95.08821 * 10 9 8 12 12 N 1.46897 * 110.48655 * 217.73663 * 10 9 8 13 13 C 1.46900 * 110.99883 * 273.54405 * 12 10 9 14 14 C 1.52998 * 109.47013 * 185.39949 * 13 12 10 15 15 C 1.50696 * 115.55005 * 39.53281 * 14 13 12 16 16 H 1.08001 * 120.00216 * 264.88337 * 15 14 13 17 17 C 1.37882 * 119.99910 * 84.88234 * 15 14 13 18 18 N 1.31514 * 119.99819 * 353.36195 * 17 15 14 19 19 Si 1.86792 * 119.99967 * 173.35833 * 17 15 14 20 20 H 1.48505 * 109.47375 * 90.00280 * 19 17 15 21 21 H 1.48502 * 109.47365 * 210.00264 * 19 17 15 22 22 H 1.48502 * 109.47417 * 330.00112 * 19 17 15 23 23 C 1.53002 * 117.49739 * 253.82386 * 14 13 12 24 24 C 1.52999 * 60.00141 * 252.51378 * 23 14 13 25 25 H 1.08999 * 109.46885 * 299.99425 * 1 2 3 26 26 H 1.08993 * 109.47424 * 59.99839 * 1 2 3 27 27 H 1.08999 * 109.47080 * 179.97438 * 1 2 3 28 28 H 0.97003 * 119.99867 * 180.02562 * 2 1 3 29 29 H 1.09000 * 110.48793 * 85.07162 * 7 5 3 30 30 H 1.08994 * 110.59860 * 322.47331 * 7 5 3 31 31 H 1.09006 * 110.03512 * 264.32445 * 8 7 5 32 32 H 1.09009 * 110.06850 * 142.91974 * 8 7 5 33 33 H 1.09007 * 110.03006 * 119.27960 * 9 8 7 34 34 H 1.08995 * 110.03230 * 240.66285 * 9 8 7 35 35 H 1.00896 * 110.99958 * 37.49853 * 12 10 9 36 36 H 1.08998 * 109.47430 * 305.40271 * 13 12 10 37 37 H 1.09003 * 109.46881 * 65.40271 * 13 12 10 38 38 H 0.97006 * 120.00127 * 179.97438 * 18 17 15 39 39 H 1.08997 * 117.50230 * 0.02562 * 23 14 13 40 40 H 1.08999 * 117.49402 * 145.02601 * 23 14 13 41 41 H 1.09008 * 117.49875 * 252.51322 * 24 23 14 42 42 H 1.08995 * 117.49998 * 107.49052 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1672 -0.0006 6 1 4.0303 0.6852 -0.8994 7 6 4.1953 0.4748 1.2713 8 6 5.6095 1.0665 1.4432 9 6 5.6092 2.4238 0.7183 10 6 4.1953 2.6103 0.1303 11 1 3.5739 3.1947 0.8088 12 7 4.2675 3.2555 -1.1874 13 6 4.2916 4.7185 -1.0565 14 6 4.2310 5.3559 -2.4461 15 6 3.3080 4.6839 -3.4297 16 1 3.6969 3.9517 -4.1218 17 6 1.9669 5.0039 -3.4459 18 7 1.4684 5.7951 -2.5213 19 14 0.8582 4.3136 -4.7814 20 1 0.2890 3.0178 -4.3315 21 1 -0.2443 5.2706 -5.0533 22 1 1.6482 4.1034 -6.0211 23 6 5.5167 5.9781 -2.9946 24 6 4.3685 6.8773 -2.5320 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.9500 -0.8401 -0.0004 29 1 4.2483 -0.6041 1.1256 30 1 3.5748 0.7121 2.1354 31 1 6.3489 0.4034 0.9939 32 1 5.8296 1.2083 2.5014 33 1 5.8283 3.2245 1.4249 34 1 6.3490 2.4198 -0.0821 35 1 5.0663 2.9259 -1.7082 36 1 3.4334 5.0450 -0.4692 37 1 5.2111 5.0234 -0.5568 38 1 0.5250 6.0205 -2.5329 39 1 6.4058 5.9330 -2.3657 40 1 5.6950 5.9014 -4.0672 41 1 3.7915 7.3922 -3.3003 42 1 4.5021 7.4241 -1.5987 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602821548.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:17 Heat of formation + Delta-G solvation = -17.117268 kcal Electronic energy + Delta-G solvation = -21315.574948 eV Core-core repulsion = 18295.847670 eV Total energy + Delta-G solvation = -3019.727278 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.70731 -37.53163 -36.36246 -34.21299 -32.90373 -31.60113 -29.50791 -27.32311 -26.18252 -25.16243 -23.52295 -21.43046 -20.95516 -20.01968 -19.60552 -18.79258 -17.24741 -15.86172 -15.60163 -15.27614 -14.66066 -14.58973 -14.30017 -13.97076 -13.35192 -13.25582 -13.08766 -12.80416 -12.42198 -12.14429 -11.85130 -11.77383 -11.54124 -11.12473 -11.06175 -10.90385 -10.76232 -10.55411 -10.50905 -10.30805 -10.25604 -9.97429 -9.27250 -9.22183 -8.78533 -8.64014 -8.12048 -7.86322 -7.20801 -5.72187 -3.71552 3.19947 3.48090 3.54294 3.55216 3.55445 4.64644 4.68405 4.71127 4.82370 5.22254 5.25128 5.45483 5.50768 5.55250 5.60556 5.63379 5.68419 5.70174 5.83347 5.87862 5.91241 6.00399 6.07668 6.24357 6.31694 6.35636 6.45466 6.57516 6.66637 6.72252 6.79461 6.86316 7.13341 7.25115 7.61044 7.66681 7.81799 8.17932 8.23236 8.45609 8.75076 8.75754 9.22174 9.90051 11.38666 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.014880 B = 0.008030 C = 0.005658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.321370 B = 3486.209760 C = 4947.343128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.747 5.747 3 C 0.517 3.483 4 O -0.501 6.501 5 C -0.101 4.101 6 H 0.102 0.898 7 C -0.114 4.114 8 C -0.117 4.117 9 C -0.158 4.158 10 C 0.107 3.893 11 H 0.087 0.913 12 N -0.643 5.643 13 C 0.114 3.886 14 C 0.052 3.948 15 C -0.465 4.465 16 H 0.053 0.947 17 C 0.077 3.923 18 N -0.876 5.876 19 Si 0.883 3.117 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.278 1.278 23 C -0.220 4.220 24 C -0.159 4.159 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.395 0.605 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.327 0.673 36 H 0.071 0.929 37 H -0.010 1.010 38 H 0.254 0.746 39 H 0.059 0.941 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.123 -12.936 8.316 16.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.401 5.401 3 C 0.303 3.697 4 O -0.373 6.373 5 C -0.123 4.123 6 H 0.120 0.880 7 C -0.152 4.152 8 C -0.156 4.156 9 C -0.198 4.198 10 C -0.005 4.005 11 H 0.106 0.894 12 N -0.270 5.270 13 C -0.014 4.014 14 C 0.051 3.949 15 C -0.503 4.503 16 H 0.072 0.928 17 C -0.125 4.125 18 N -0.513 5.513 19 Si 0.712 3.288 20 H -0.210 1.210 21 H -0.217 1.217 22 H -0.204 1.204 23 C -0.257 4.257 24 C -0.197 4.197 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.227 0.773 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.145 0.855 36 H 0.089 0.911 37 H 0.008 0.992 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.783 -12.033 8.251 15.073 hybrid contribution 0.373 -0.648 -0.388 0.842 sum 4.157 -12.681 7.863 15.489 Atomic orbital electron populations 1.21430 0.80435 1.01269 1.02278 1.45841 1.07222 1.08722 1.78325 1.20516 0.89914 0.83403 0.75906 1.90825 1.69799 1.30776 1.45885 1.22274 0.91498 0.99178 0.99363 0.87978 1.22317 0.96652 0.99227 0.97048 1.22022 0.96478 0.96779 1.00272 1.23027 0.99447 0.96991 1.00334 1.22212 0.93088 0.92889 0.92292 0.89447 1.60112 1.47082 1.06731 1.13070 1.21443 0.96703 0.85776 0.97516 1.18896 0.92293 0.90908 0.92782 1.20042 0.91662 1.22551 1.16010 0.92843 1.24804 0.97618 0.94949 0.95162 1.69987 1.12704 1.36253 1.32367 0.86751 0.80651 0.78819 0.82547 1.20991 1.21700 1.20356 1.23078 0.92531 1.10668 0.99465 1.22472 1.00803 0.96160 1.00304 0.92700 0.92356 0.91409 0.77267 0.91396 0.91430 0.91881 0.92049 0.92004 0.91686 0.85489 0.91067 0.99236 0.93628 0.92280 0.90727 0.90194 0.92283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.13 10.70 59.85 0.64 1.77 16 2 N -0.75 -9.86 5.66 -67.08 -0.38 -10.24 16 3 C 0.52 9.06 7.15 -10.98 -0.08 8.98 16 4 O -0.50 -11.75 15.79 5.56 0.09 -11.67 16 5 C -0.10 -1.49 2.96 -89.74 -0.27 -1.75 16 6 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 7 C -0.11 -1.24 6.22 -25.07 -0.16 -1.39 16 8 C -0.12 -1.25 6.80 -25.61 -0.17 -1.42 16 9 C -0.16 -2.14 6.44 -25.61 -0.17 -2.30 16 10 C 0.11 1.86 2.19 -66.02 -0.14 1.71 16 11 H 0.09 1.76 7.18 -51.93 -0.37 1.39 16 12 N -0.64 -13.43 5.63 -104.94 -0.59 -14.02 16 13 C 0.11 2.68 5.65 -3.82 -0.02 2.65 16 14 C 0.05 1.32 1.74 -155.66 -0.27 1.05 16 15 C -0.46 -13.16 8.15 -34.44 -0.28 -13.44 16 16 H 0.05 1.53 7.82 -52.49 -0.41 1.12 16 17 C 0.08 2.26 5.39 -17.82 -0.10 2.16 16 18 N -0.88 -26.66 12.95 55.43 0.72 -25.95 16 19 Si 0.88 22.90 29.54 -169.99 -5.02 17.88 16 20 H -0.28 -7.47 7.11 56.52 0.40 -7.07 16 21 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 22 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 23 C -0.22 -4.96 9.88 -26.73 -0.26 -5.23 16 24 C -0.16 -3.92 9.48 -26.73 -0.25 -4.18 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.39 3.72 8.82 -40.82 -0.36 3.36 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.76 8.04 -51.93 -0.42 0.34 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.87 7.57 -51.93 -0.39 0.47 16 35 H 0.33 6.35 8.20 -39.29 -0.32 6.02 16 36 H 0.07 1.91 7.96 -51.93 -0.41 1.50 16 37 H -0.01 -0.22 7.94 -51.93 -0.41 -0.63 16 38 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 39 H 0.06 1.20 8.08 -51.93 -0.42 0.78 16 40 H 0.07 1.67 8.14 -51.93 -0.42 1.25 16 41 H 0.08 2.10 8.14 -51.92 -0.42 1.67 16 42 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 LS Contribution 343.16 15.07 5.17 5.17 Total: -1.00 -33.91 343.16 -8.85 -42.77 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -7.31 Total: 7.44 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -1.53 Total: -11.38 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: -0.25 Total: -50.20 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.09 Total: -11.67 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.91 -8.85 -42.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602821548.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.648 kcal (2) G-P(sol) polarization free energy of solvation -33.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds