Wall clock time and date at job start Mon Mar 30 2020 00:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34778 * 119.99715 * 2 1 4 4 O 1.21278 * 120.00187 * 0.02562 * 3 2 1 5 5 C 1.50708 * 119.99667 * 180.02562 * 3 2 1 6 6 H 1.08996 * 110.66933 * 61.78072 * 5 3 2 7 7 C 1.54887 * 110.75271 * 298.54864 * 5 3 2 8 8 C 1.54267 * 104.18901 * 203.74201 * 7 5 3 9 9 C 1.53876 * 106.60124 * 23.61150 * 8 7 5 10 10 C 1.54265 * 106.63989 * 359.97438 * 9 8 7 11 11 H 1.09002 * 110.48744 * 95.08821 * 10 9 8 12 12 N 1.46897 * 110.48655 * 217.73663 * 10 9 8 13 13 C 1.46900 * 110.99883 * 273.54405 * 12 10 9 14 14 C 1.52998 * 109.47013 * 185.39949 * 13 12 10 15 15 C 1.50696 * 115.55005 * 39.53281 * 14 13 12 16 16 H 1.08001 * 120.00216 * 264.88337 * 15 14 13 17 17 C 1.37882 * 119.99910 * 84.88234 * 15 14 13 18 18 N 1.31514 * 119.99819 * 353.36195 * 17 15 14 19 19 Si 1.86792 * 119.99967 * 173.35833 * 17 15 14 20 20 H 1.48505 * 109.47375 * 90.00280 * 19 17 15 21 21 H 1.48502 * 109.47365 * 210.00264 * 19 17 15 22 22 H 1.48502 * 109.47417 * 330.00112 * 19 17 15 23 23 C 1.53002 * 117.49739 * 253.82386 * 14 13 12 24 24 C 1.52999 * 60.00141 * 252.51378 * 23 14 13 25 25 H 1.08999 * 109.46885 * 299.99425 * 1 2 3 26 26 H 1.08993 * 109.47424 * 59.99839 * 1 2 3 27 27 H 1.08999 * 109.47080 * 179.97438 * 1 2 3 28 28 H 0.97003 * 119.99867 * 180.02562 * 2 1 3 29 29 H 1.09000 * 110.48793 * 85.07162 * 7 5 3 30 30 H 1.08994 * 110.59860 * 322.47331 * 7 5 3 31 31 H 1.09006 * 110.03512 * 264.32445 * 8 7 5 32 32 H 1.09009 * 110.06850 * 142.91974 * 8 7 5 33 33 H 1.09007 * 110.03006 * 119.27960 * 9 8 7 34 34 H 1.08995 * 110.03230 * 240.66285 * 9 8 7 35 35 H 1.00896 * 110.99958 * 37.49853 * 12 10 9 36 36 H 1.08998 * 109.47430 * 305.40271 * 13 12 10 37 37 H 1.09003 * 109.46881 * 65.40271 * 13 12 10 38 38 H 0.97006 * 120.00127 * 179.97438 * 18 17 15 39 39 H 1.08997 * 117.50230 * 0.02562 * 23 14 13 40 40 H 1.08999 * 117.49402 * 145.02601 * 23 14 13 41 41 H 1.09008 * 117.49875 * 252.51322 * 24 23 14 42 42 H 1.08995 * 117.49998 * 107.49052 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1672 -0.0006 6 1 4.0303 0.6852 -0.8994 7 6 4.1953 0.4748 1.2713 8 6 5.6095 1.0665 1.4432 9 6 5.6092 2.4238 0.7183 10 6 4.1953 2.6103 0.1303 11 1 3.5739 3.1947 0.8088 12 7 4.2675 3.2555 -1.1874 13 6 4.2916 4.7185 -1.0565 14 6 4.2310 5.3559 -2.4461 15 6 3.3080 4.6839 -3.4297 16 1 3.6969 3.9517 -4.1218 17 6 1.9669 5.0039 -3.4459 18 7 1.4684 5.7951 -2.5213 19 14 0.8582 4.3136 -4.7814 20 1 0.2890 3.0178 -4.3315 21 1 -0.2443 5.2706 -5.0533 22 1 1.6482 4.1034 -6.0211 23 6 5.5167 5.9781 -2.9946 24 6 4.3685 6.8773 -2.5320 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.9500 -0.8401 -0.0004 29 1 4.2483 -0.6041 1.1256 30 1 3.5748 0.7121 2.1354 31 1 6.3489 0.4034 0.9939 32 1 5.8296 1.2083 2.5014 33 1 5.8283 3.2245 1.4249 34 1 6.3490 2.4198 -0.0821 35 1 5.0663 2.9259 -1.7082 36 1 3.4334 5.0450 -0.4692 37 1 5.2111 5.0234 -0.5568 38 1 0.5250 6.0205 -2.5329 39 1 6.4058 5.9330 -2.3657 40 1 5.6950 5.9014 -4.0672 41 1 3.7915 7.3922 -3.3003 42 1 4.5021 7.4241 -1.5987 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602821548.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:17 Heat of formation + Delta-G solvation = -41.779816 kcal Electronic energy + Delta-G solvation = -21316.644397 eV Core-core repulsion = 18295.847670 eV Total energy + Delta-G solvation = -3020.796726 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.01636 -39.03152 -38.04253 -35.53859 -34.41310 -33.80152 -30.62137 -28.71740 -27.34419 -27.23311 -25.19074 -22.91336 -22.58094 -21.13000 -21.09196 -20.60059 -18.54389 -17.79570 -16.96722 -16.55992 -16.55213 -16.00825 -15.83254 -15.42964 -14.92621 -14.71071 -14.46346 -14.39606 -13.77096 -13.62054 -13.36071 -13.13735 -12.95292 -12.88703 -12.77392 -12.47606 -12.39385 -12.19051 -12.05256 -11.91840 -11.66857 -11.29912 -11.21607 -10.69867 -10.63798 -10.29445 -10.03014 -9.84445 -8.79358 -7.96130 -5.99207 1.37603 1.40408 1.47962 1.85183 2.41976 2.50355 3.35455 3.39162 3.59138 3.61782 3.75968 4.06480 4.31291 4.42920 4.47460 4.50640 4.51439 4.56620 4.59591 4.62520 4.70318 4.74619 4.82143 4.86315 4.93247 5.01271 5.05403 5.16703 5.19510 5.22700 5.31373 5.36179 5.46651 5.57362 5.66015 5.74240 5.91444 6.44402 6.63953 6.72335 6.94265 7.03426 7.49849 7.64436 9.13632 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.014880 B = 0.008030 C = 0.005658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.321370 B = 3486.209760 C = 4947.343128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.727 5.727 3 C 0.508 3.492 4 O -0.575 6.575 5 C -0.097 4.097 6 H 0.115 0.885 7 C -0.102 4.102 8 C -0.109 4.109 9 C -0.150 4.150 10 C 0.101 3.899 11 H 0.045 0.955 12 N -0.661 5.661 13 C 0.134 3.866 14 C 0.020 3.980 15 C -0.463 4.463 16 H 0.048 0.952 17 C 0.024 3.976 18 N -0.908 5.908 19 Si 0.938 3.062 20 H -0.292 1.292 21 H -0.289 1.289 22 H -0.263 1.263 23 C -0.184 4.184 24 C -0.170 4.170 25 H 0.045 0.955 26 H 0.027 0.973 27 H 0.117 0.883 28 H 0.418 0.582 29 H 0.107 0.893 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.337 0.663 36 H 0.021 0.979 37 H 0.010 0.990 38 H 0.248 0.752 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.055 0.945 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.296 -15.906 8.455 19.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.381 5.381 3 C 0.295 3.705 4 O -0.453 6.453 5 C -0.119 4.119 6 H 0.133 0.867 7 C -0.140 4.140 8 C -0.147 4.147 9 C -0.190 4.190 10 C -0.010 4.010 11 H 0.064 0.936 12 N -0.290 5.290 13 C 0.005 3.995 14 C 0.019 3.981 15 C -0.501 4.501 16 H 0.067 0.933 17 C -0.175 4.175 18 N -0.548 5.548 19 Si 0.766 3.234 20 H -0.219 1.219 21 H -0.215 1.215 22 H -0.187 1.187 23 C -0.221 4.221 24 C -0.209 4.209 25 H 0.064 0.936 26 H 0.046 0.954 27 H 0.136 0.864 28 H 0.254 0.746 29 H 0.125 0.875 30 H 0.079 0.921 31 H 0.106 0.894 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.155 0.845 36 H 0.040 0.960 37 H 0.028 0.972 38 H 0.056 0.944 39 H 0.109 0.891 40 H 0.097 0.903 41 H 0.074 0.926 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.988 -15.083 8.381 18.265 hybrid contribution -0.308 0.241 -0.415 0.570 sum 5.680 -14.843 7.966 17.777 Atomic orbital electron populations 1.21543 0.79945 1.03865 1.00349 1.45696 1.07691 1.08607 1.76128 1.21158 0.91301 0.83372 0.74665 1.90805 1.71347 1.33547 1.49619 1.22296 0.89517 0.97960 1.02138 0.86682 1.22329 0.96291 1.01101 0.94325 1.22018 0.96756 0.94997 1.00957 1.22896 0.96451 0.99054 1.00566 1.22209 0.95192 0.93558 0.90073 0.93619 1.59977 1.47943 1.05343 1.15752 1.21027 0.95336 0.87527 0.95631 1.19049 0.94262 0.91235 0.93562 1.20311 0.92119 1.21775 1.15913 0.93342 1.25498 0.99216 0.95692 0.97050 1.70132 1.12400 1.38111 1.34115 0.85880 0.79157 0.77589 0.80807 1.21873 1.21538 1.18726 1.23050 0.92171 1.06737 1.00101 1.22386 1.02382 0.95859 1.00238 0.93647 0.95422 0.86412 0.74551 0.87457 0.92077 0.89358 0.90625 0.92505 0.90925 0.84453 0.96023 0.97248 0.94361 0.89096 0.90339 0.92586 0.91483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.12 10.70 127.77 1.37 3.49 16 2 N -0.73 -18.16 5.66 -484.52 -2.74 -20.91 16 3 C 0.51 17.94 7.15 87.66 0.63 18.57 16 4 O -0.58 -28.65 15.79 -3.02 -0.05 -28.69 16 5 C -0.10 -2.74 2.96 -10.22 -0.03 -2.77 16 6 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 7 C -0.10 -1.86 6.22 31.67 0.20 -1.67 16 8 C -0.11 -1.89 6.80 31.32 0.21 -1.67 16 9 C -0.15 -3.76 6.44 31.32 0.20 -3.56 16 10 C 0.10 3.53 2.19 46.02 0.10 3.63 16 11 H 0.05 1.97 7.18 -2.39 -0.02 1.95 16 12 N -0.66 -27.99 5.63 -485.91 -2.74 -30.72 16 13 C 0.13 6.45 5.65 86.30 0.49 6.94 16 14 C 0.02 1.01 1.74 -52.93 -0.09 0.92 16 15 C -0.46 -26.62 8.15 25.60 0.21 -26.42 16 16 H 0.05 2.77 7.82 -2.91 -0.02 2.75 16 17 C 0.02 1.46 5.39 84.66 0.46 1.91 16 18 N -0.91 -57.83 12.95 21.45 0.28 -57.56 16 19 Si 0.94 48.22 29.54 68.60 2.03 50.25 16 20 H -0.29 -15.27 7.11 99.48 0.71 -14.57 16 21 H -0.29 -14.67 7.11 99.48 0.71 -13.96 16 22 H -0.26 -12.72 7.11 99.48 0.71 -12.01 16 23 C -0.18 -7.96 9.88 30.59 0.30 -7.66 16 24 C -0.17 -8.49 9.48 30.60 0.29 -8.20 16 25 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.42 6.48 8.82 -92.71 -0.82 5.67 16 29 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.06 1.22 8.04 -2.39 -0.02 1.20 16 31 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 32 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.06 1.46 8.14 -2.38 -0.02 1.45 16 34 H 0.07 1.72 7.57 -2.39 -0.02 1.70 16 35 H 0.34 12.77 8.20 -89.70 -0.74 12.03 16 36 H 0.02 1.23 7.96 -2.39 -0.02 1.21 16 37 H 0.01 0.41 7.94 -2.39 -0.02 0.39 16 38 H 0.25 15.44 8.31 -92.70 -0.77 14.67 16 39 H 0.09 3.38 8.08 -2.39 -0.02 3.36 16 40 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 41 H 0.06 3.02 8.14 -2.38 -0.02 3.00 16 42 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -79.40 343.16 0.56 -78.84 By element: Atomic # 1 Polarization: 25.85 SS G_CDS: -0.55 Total: 25.30 kcal Atomic # 6 Polarization: -20.83 SS G_CDS: 4.33 Total: -16.50 kcal Atomic # 7 Polarization: -103.99 SS G_CDS: -5.20 Total: -109.18 kcal Atomic # 8 Polarization: -28.65 SS G_CDS: -0.05 Total: -28.69 kcal Atomic # 14 Polarization: 48.22 SS G_CDS: 2.03 Total: 50.25 kcal Total: -79.40 0.56 -78.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602821548.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.057 kcal (2) G-P(sol) polarization free energy of solvation -79.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds