Wall clock time and date at job start Mon Mar 30 2020 00:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34773 * 120.00312 * 2 1 4 4 O 1.21283 * 119.99755 * 359.97438 * 3 2 1 5 5 C 1.50704 * 120.00548 * 180.02562 * 3 2 1 6 6 H 1.09002 * 110.00736 * 325.30798 * 5 3 2 7 7 C 1.54265 * 110.03437 * 203.91976 * 5 3 2 8 8 C 1.55009 * 104.13638 * 217.06456 * 7 5 3 9 9 C 1.54892 * 102.75580 * 37.94590 * 8 7 5 10 10 C 1.53873 * 110.03249 * 86.69526 * 5 3 2 11 11 H 1.09002 * 110.03140 * 238.66765 * 10 5 3 12 12 N 1.46898 * 110.03378 * 0.05341 * 10 5 3 13 13 C 1.46900 * 111.00107 * 206.82762 * 12 10 5 14 14 C 1.52998 * 109.47175 * 184.28040 * 13 12 10 15 15 C 1.50697 * 115.54841 * 276.50570 * 14 13 12 16 16 H 1.08002 * 119.99749 * 114.40347 * 15 14 13 17 17 C 1.37878 * 120.00286 * 294.40316 * 15 14 13 18 18 N 1.31517 * 119.99526 * 353.45866 * 17 15 14 19 19 Si 1.86796 * 120.00354 * 173.46207 * 17 15 14 20 20 H 1.48507 * 109.46877 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47262 * 119.99783 * 19 17 15 22 22 H 1.48501 * 109.47097 * 240.00046 * 19 17 15 23 23 C 1.53004 * 117.49898 * 130.79882 * 14 13 12 24 24 C 1.53000 * 60.00002 * 252.50969 * 23 14 13 25 25 H 1.09007 * 109.47315 * 300.00494 * 1 2 3 26 26 H 1.09004 * 109.47377 * 60.00165 * 1 2 3 27 27 H 1.08996 * 109.47100 * 180.02562 * 1 2 3 28 28 H 0.96999 * 120.00314 * 179.97438 * 2 1 3 29 29 H 1.09003 * 110.48509 * 335.72850 * 7 5 3 30 30 H 1.09000 * 110.48816 * 98.37490 * 7 5 3 31 31 H 1.09005 * 110.76527 * 279.63489 * 8 7 5 32 32 H 1.09001 * 110.90795 * 156.33541 * 8 7 5 33 33 H 1.09001 * 110.49315 * 203.36933 * 9 8 7 34 34 H 1.09007 * 110.59613 * 80.78405 * 9 8 7 35 35 H 1.00898 * 110.99593 * 82.87515 * 12 10 5 36 36 H 1.09005 * 109.46819 * 304.28016 * 13 12 10 37 37 H 1.09002 * 109.46851 * 64.27763 * 13 12 10 38 38 H 0.96999 * 119.99845 * 185.00002 * 18 17 15 39 39 H 1.09000 * 117.49391 * 359.97438 * 23 14 13 40 40 H 1.08998 * 117.49692 * 145.01855 * 23 14 13 41 41 H 1.08999 * 117.49714 * 252.51373 * 24 23 14 42 42 H 1.09000 * 117.49977 * 107.48523 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1672 -0.0006 6 1 4.0191 0.3249 0.5820 7 6 4.1746 2.4919 0.5871 8 6 5.4308 2.8090 -0.2638 9 6 5.0039 2.3614 -1.6839 10 6 4.1725 1.0842 -1.4440 11 1 4.8007 0.2013 -1.5621 12 7 3.0479 1.0311 -2.3877 13 6 3.4317 0.3401 -3.6258 14 6 2.2725 0.3980 -4.6226 15 6 1.2112 -0.6574 -4.4473 16 1 0.2098 -0.3735 -4.1589 17 6 1.5184 -1.9853 -4.6551 18 7 2.6982 -2.3207 -5.1297 19 14 0.2591 -3.3079 -4.2626 20 1 -0.9802 -2.6736 -3.7457 21 1 -0.0547 -4.0740 -5.4954 22 1 0.8108 -4.2275 -3.2353 23 6 2.5893 0.8519 -6.0491 24 6 1.8228 1.7791 -5.1037 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.9500 -0.8400 0.0004 29 1 3.4307 3.2812 0.4785 30 1 4.4454 2.3632 1.6351 31 1 6.2878 2.2309 0.0819 32 1 5.6537 3.8758 -0.2458 33 1 5.8797 2.1376 -2.2929 34 1 4.3947 3.1291 -2.1610 35 1 2.6967 1.9564 -2.5840 36 1 4.3066 0.8266 -4.0572 37 1 3.6676 -0.7005 -3.4029 38 1 2.8891 -3.2472 -5.3442 39 1 3.6236 1.1095 -6.2771 40 1 2.0302 0.3869 -6.8610 41 1 0.7594 1.9241 -5.2938 42 1 2.3529 2.6463 -4.7100 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602821549.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:19 Heat of formation + Delta-G solvation = -22.835004 kcal Electronic energy + Delta-G solvation = -21636.556784 eV Core-core repulsion = 18616.581566 eV Total energy + Delta-G solvation = -3019.975218 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.81169 -37.49461 -36.44993 -33.98553 -32.87409 -31.92570 -29.43801 -27.38880 -25.99082 -25.48319 -23.58621 -21.29143 -20.97697 -20.59515 -19.13280 -18.93171 -16.80932 -16.48678 -15.58883 -15.26742 -14.66610 -14.47461 -14.29945 -14.08443 -13.56239 -13.25852 -13.13047 -12.88091 -12.42352 -11.93337 -11.82831 -11.76021 -11.32961 -11.07639 -10.99005 -10.95573 -10.91074 -10.66052 -10.55624 -10.51370 -10.41563 -10.19905 -9.31761 -9.24619 -8.89048 -8.50101 -8.49057 -8.07493 -7.51733 -5.98871 -4.00298 3.27517 3.28016 3.36629 3.41189 3.82633 4.42974 4.60670 4.78939 4.86640 5.13621 5.26865 5.42209 5.52739 5.56674 5.64007 5.66944 5.73578 5.77575 5.82991 5.94514 5.99934 6.10478 6.16422 6.21274 6.31996 6.35808 6.42553 6.49151 6.56206 6.67082 6.75252 6.94434 6.99172 7.10599 7.43351 7.65357 7.92832 7.98634 8.08019 8.17862 8.53227 8.84612 8.97510 9.61261 11.09757 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.017396 B = 0.007516 C = 0.006149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.172109 B = 3724.342953 C = 4552.686498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.718 5.718 3 C 0.554 3.446 4 O -0.558 6.558 5 C -0.107 4.107 6 H 0.085 0.915 7 C -0.114 4.114 8 C -0.119 4.119 9 C -0.151 4.151 10 C 0.095 3.905 11 H 0.082 0.918 12 N -0.670 5.670 13 C 0.110 3.890 14 C 0.059 3.941 15 C -0.469 4.469 16 H 0.057 0.943 17 C 0.068 3.932 18 N -0.885 5.885 19 Si 0.887 3.113 20 H -0.273 1.273 21 H -0.287 1.287 22 H -0.285 1.285 23 C -0.177 4.177 24 C -0.210 4.210 25 H 0.047 0.953 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.399 0.601 29 H 0.086 0.914 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.337 0.663 36 H -0.003 1.003 37 H 0.085 0.915 38 H 0.257 0.743 39 H 0.060 0.940 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.219 4.564 10.209 11.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.367 5.367 3 C 0.341 3.659 4 O -0.437 6.437 5 C -0.130 4.130 6 H 0.103 0.897 7 C -0.151 4.151 8 C -0.157 4.157 9 C -0.190 4.190 10 C -0.016 4.016 11 H 0.101 0.899 12 N -0.300 5.300 13 C -0.018 4.018 14 C 0.059 3.941 15 C -0.507 4.507 16 H 0.075 0.925 17 C -0.133 4.133 18 N -0.523 5.523 19 Si 0.715 3.285 20 H -0.198 1.198 21 H -0.214 1.214 22 H -0.211 1.211 23 C -0.215 4.215 24 C -0.247 4.247 25 H 0.066 0.934 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.232 0.768 29 H 0.104 0.896 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.156 0.844 36 H 0.015 0.985 37 H 0.103 0.897 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.590 4.549 10.486 11.980 hybrid contribution 0.200 -0.665 -0.527 0.872 sum 3.789 3.885 9.958 11.341 Atomic orbital electron populations 1.21389 0.80411 1.01529 1.01587 1.45482 1.07187 1.08639 1.75351 1.19879 0.89123 0.83324 0.73600 1.90600 1.70292 1.31583 1.51219 1.22047 0.93065 0.99644 0.98217 0.89673 1.22377 0.97634 0.96884 0.98255 1.22421 0.97380 1.00693 0.95249 1.23128 1.00329 0.98444 0.97106 1.22111 0.91544 0.97227 0.90753 0.89930 1.60526 1.30710 1.23978 1.14750 1.21537 0.94155 0.98464 0.87659 1.18841 0.94830 0.90509 0.89962 1.20420 0.94996 0.89675 1.45646 0.92465 1.24917 0.95048 0.98258 0.95111 1.69980 1.21035 1.17641 1.43666 0.86619 0.81846 0.82005 0.78002 1.19783 1.21369 1.21116 1.22753 0.97551 1.04451 0.96787 1.22816 0.98937 0.94744 1.08229 0.93415 0.91899 0.91508 0.76848 0.89563 0.91902 0.91689 0.91736 0.91751 0.91415 0.84416 0.98498 0.89692 0.93285 0.92190 0.90353 0.90642 0.92107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.43 10.70 59.84 0.64 2.07 16 2 N -0.72 -11.21 5.71 -67.08 -0.38 -11.59 16 3 C 0.55 9.35 5.52 -10.99 -0.06 9.29 16 4 O -0.56 -11.20 15.57 5.55 0.09 -11.11 16 5 C -0.11 -1.51 3.29 -90.65 -0.30 -1.81 16 6 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 7 C -0.11 -1.44 6.31 -25.01 -0.16 -1.60 16 8 C -0.12 -1.37 6.91 -24.67 -0.17 -1.54 16 9 C -0.15 -2.06 6.48 -25.07 -0.16 -2.23 16 10 C 0.10 1.47 3.22 -66.60 -0.21 1.25 16 11 H 0.08 1.28 7.83 -51.93 -0.41 0.87 16 12 N -0.67 -12.69 4.70 -105.54 -0.50 -13.18 16 13 C 0.11 2.41 5.36 -3.82 -0.02 2.39 16 14 C 0.06 1.43 1.50 -155.66 -0.23 1.20 16 15 C -0.47 -12.54 8.83 -34.44 -0.30 -12.85 16 16 H 0.06 1.58 7.82 -52.49 -0.41 1.17 16 17 C 0.07 1.82 5.25 -17.82 -0.09 1.73 16 18 N -0.89 -24.36 12.54 55.43 0.70 -23.67 16 19 Si 0.89 20.73 29.55 -169.99 -5.02 15.71 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 C -0.18 -4.14 9.88 -26.73 -0.26 -4.40 16 24 C -0.21 -4.62 9.39 -26.73 -0.25 -4.88 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.40 5.55 8.83 -40.82 -0.36 5.19 16 29 H 0.09 1.28 6.80 -51.93 -0.35 0.93 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 1.00 7.53 -51.93 -0.39 0.61 16 35 H 0.34 6.71 7.15 -39.29 -0.28 6.43 16 36 H 0.00 -0.07 7.91 -51.93 -0.41 -0.48 16 37 H 0.08 2.09 7.24 -51.93 -0.38 1.71 16 38 H 0.26 6.82 8.32 -40.82 -0.34 6.48 16 39 H 0.06 1.33 8.06 -51.93 -0.42 0.91 16 40 H 0.08 1.92 8.14 -51.93 -0.42 1.50 16 41 H 0.07 1.68 8.14 -51.93 -0.42 1.25 16 42 H 0.06 1.23 7.81 -51.93 -0.41 0.82 16 LS Contribution 338.77 15.07 5.11 5.11 Total: -1.00 -29.30 338.77 -8.78 -38.08 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -7.18 Total: 12.02 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: -1.59 Total: -11.36 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: -0.18 Total: -48.44 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.09 Total: -11.11 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.30 -8.78 -38.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602821549.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.249 kcal (2) G-P(sol) polarization free energy of solvation -29.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds