Wall clock time and date at job start Mon Mar 30 2020 00:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34769 * 120.00150 * 2 1 4 4 O 1.21284 * 120.00351 * 4.24428 * 3 2 1 5 5 C 1.50707 * 120.00163 * 184.24214 * 3 2 1 6 6 H 1.09002 * 110.05160 * 26.52043 * 5 3 2 7 7 C 1.54267 * 110.03150 * 147.93084 * 5 3 2 8 8 C 1.54887 * 104.31105 * 142.96363 * 7 5 3 9 9 C 1.54894 * 102.75120 * 321.99421 * 8 7 5 10 10 C 1.54205 * 110.14731 * 264.96040 * 5 3 2 11 11 H 1.08998 * 110.00628 * 121.43911 * 10 5 3 12 12 N 1.46906 * 110.06764 * 0.05912 * 10 5 3 13 13 C 1.46897 * 111.00388 * 169.51118 * 12 10 5 14 14 C 1.52999 * 109.47127 * 184.03476 * 13 12 10 15 15 C 1.50699 * 115.55110 * 282.45121 * 14 13 12 16 16 H 1.07999 * 119.99718 * 143.78748 * 15 14 13 17 17 C 1.37874 * 119.99996 * 323.78815 * 15 14 13 18 18 N 1.31516 * 120.00322 * 340.04608 * 17 15 14 19 19 Si 1.86803 * 120.00146 * 160.04892 * 17 15 14 20 20 H 1.48506 * 109.47036 * 64.99999 * 19 17 15 21 21 H 1.48496 * 109.47252 * 184.99965 * 19 17 15 22 22 H 1.48501 * 109.46977 * 305.00180 * 19 17 15 23 23 C 1.52997 * 117.49559 * 136.74638 * 14 13 12 24 24 C 1.53002 * 60.00130 * 252.51181 * 23 14 13 25 25 H 1.08999 * 109.47173 * 175.16368 * 1 2 3 26 26 H 1.08999 * 109.46334 * 295.16254 * 1 2 3 27 27 H 1.08993 * 109.46705 * 55.15979 * 1 2 3 28 28 H 0.96998 * 119.99397 * 179.97438 * 2 1 3 29 29 H 1.08995 * 110.48498 * 24.22247 * 7 5 3 30 30 H 1.08995 * 110.48746 * 261.71277 * 7 5 3 31 31 H 1.09003 * 110.75681 * 80.30540 * 8 7 5 32 32 H 1.08995 * 110.76012 * 203.49188 * 8 7 5 33 33 H 1.08996 * 110.48866 * 156.61819 * 9 8 7 34 34 H 1.08995 * 110.48478 * 279.12980 * 9 8 7 35 35 H 1.00907 * 110.99574 * 45.55411 * 12 10 5 36 36 H 1.09000 * 109.46808 * 304.03902 * 13 12 10 37 37 H 1.09007 * 109.46982 * 64.03369 * 13 12 10 38 38 H 0.96992 * 120.00675 * 185.02584 * 18 17 15 39 39 H 1.08996 * 117.50525 * 359.97438 * 23 14 13 40 40 H 1.09001 * 117.49967 * 145.02487 * 23 14 13 41 41 H 1.09000 * 117.49701 * 252.51892 * 24 23 14 42 42 H 1.08993 * 117.52237 * 107.48241 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5351 2.2161 0.0777 5 6 3.6429 1.1689 -0.0965 6 1 3.9855 0.2707 -0.6103 7 6 4.1224 2.4253 -0.8524 8 6 5.4278 2.8342 -0.1260 9 6 5.0992 2.5405 1.3589 10 6 4.2655 1.2433 1.3123 11 1 4.9087 0.3798 1.4818 12 7 3.2066 1.2888 2.3296 13 6 3.7631 1.1098 3.6772 14 6 2.6238 1.0624 4.6973 15 6 2.0192 2.3946 5.0588 16 1 0.9589 2.4726 5.2487 17 6 2.8196 3.5137 5.1472 18 7 4.1182 3.3823 5.3089 19 14 2.0597 5.2166 5.0374 20 1 1.1672 5.4365 6.2037 21 1 3.1359 6.2399 5.0378 22 1 1.2719 5.3272 3.7834 23 6 2.7031 0.0006 5.7959 24 6 1.6909 -0.1497 4.6585 25 1 -0.3633 -1.0240 -0.0866 26 1 -0.3632 0.4370 0.9302 27 1 -0.3632 0.5871 -0.8434 28 1 1.9500 -0.8401 0.0004 29 1 3.3804 3.2205 -0.7799 30 1 4.3251 2.1881 -1.8967 31 1 6.2655 2.2242 -0.4641 32 1 5.6379 3.8932 -0.2758 33 1 6.0152 2.3850 1.9289 34 1 4.5170 3.3553 1.7892 35 1 2.4924 0.6020 2.1390 36 1 4.3256 0.1770 3.7170 37 1 4.4253 1.9436 3.9106 38 1 4.6720 4.1671 5.4441 39 1 3.5667 -0.6645 5.7918 40 1 2.3180 0.2654 6.7806 41 1 0.6399 0.0165 4.8949 42 1 1.8885 -0.9131 3.9060 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602821551.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:23 Heat of formation + Delta-G solvation = -12.495800 kcal Electronic energy + Delta-G solvation = -21773.759454 eV Core-core repulsion = 18754.232578 eV Total energy + Delta-G solvation = -3019.526876 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.96469 -37.40400 -36.43495 -34.27516 -32.79605 -32.04232 -29.47831 -27.16922 -26.21411 -25.43631 -23.63414 -21.38191 -21.05728 -20.25566 -19.15871 -18.86818 -16.87697 -16.42911 -15.71442 -15.26348 -14.93931 -14.54618 -14.36906 -14.17251 -13.55899 -13.22900 -13.12159 -12.95251 -12.38423 -12.13945 -11.76396 -11.56404 -11.26417 -10.98580 -10.80697 -10.75114 -10.71579 -10.56971 -10.42919 -10.40172 -10.24141 -10.06586 -9.40663 -9.14041 -9.06638 -8.85325 -8.63199 -7.89552 -7.37863 -5.94906 -3.88775 3.06257 3.41150 3.46442 3.47534 3.58106 4.52422 4.70815 4.81087 4.92373 5.05080 5.21058 5.34468 5.49170 5.57372 5.66197 5.67014 5.76068 5.80148 5.88225 6.00590 6.03754 6.12900 6.20973 6.27297 6.38659 6.47745 6.55938 6.62360 6.66180 6.69417 6.77148 6.90629 7.00026 7.16628 7.37213 7.71880 7.73795 8.09952 8.13421 8.32170 8.61001 8.62318 9.01578 9.67531 11.08926 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.014906 B = 0.008154 C = 0.007073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.944338 B = 3433.121476 C = 3957.717841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.746 5.746 3 C 0.529 3.471 4 O -0.513 6.513 5 C -0.111 4.111 6 H 0.082 0.918 7 C -0.107 4.107 8 C -0.122 4.122 9 C -0.109 4.109 10 C 0.099 3.901 11 H 0.035 0.965 12 N -0.661 5.661 13 C 0.087 3.913 14 C 0.067 3.933 15 C -0.478 4.478 16 H 0.056 0.944 17 C 0.083 3.917 18 N -0.876 5.876 19 Si 0.886 3.114 20 H -0.282 1.282 21 H -0.288 1.288 22 H -0.271 1.271 23 C -0.205 4.205 24 C -0.215 4.215 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.395 0.605 29 H 0.086 0.914 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.087 0.913 35 H 0.323 0.677 36 H -0.014 1.014 37 H 0.128 0.872 38 H 0.261 0.739 39 H 0.060 0.940 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.199 -7.414 -12.159 14.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.399 5.399 3 C 0.315 3.685 4 O -0.386 6.386 5 C -0.133 4.133 6 H 0.100 0.900 7 C -0.145 4.145 8 C -0.160 4.160 9 C -0.147 4.147 10 C -0.012 4.012 11 H 0.053 0.947 12 N -0.293 5.293 13 C -0.040 4.040 14 C 0.067 3.933 15 C -0.515 4.515 16 H 0.074 0.926 17 C -0.120 4.120 18 N -0.513 5.513 19 Si 0.714 3.286 20 H -0.208 1.208 21 H -0.214 1.214 22 H -0.196 1.196 23 C -0.243 4.243 24 C -0.252 4.252 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.228 0.772 29 H 0.105 0.895 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.106 0.894 35 H 0.142 0.858 36 H 0.004 0.996 37 H 0.145 0.855 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.909 -5.813 -12.118 13.471 hybrid contribution -0.044 -0.823 0.095 0.829 sum 0.865 -6.636 -12.023 13.760 Atomic orbital electron populations 1.21465 0.80044 1.01455 1.02470 1.45886 1.07581 1.08609 1.77847 1.20260 0.89556 0.83495 0.75212 1.90693 1.69815 1.31237 1.46858 1.22168 0.92134 1.00510 0.98485 0.90011 1.22296 0.98203 0.96697 0.97325 1.22459 0.96523 1.00928 0.96079 1.22371 0.99026 0.98131 0.95189 1.22078 0.92698 0.97395 0.88995 0.94735 1.60626 1.11335 1.55331 1.01994 1.21892 0.97158 0.99597 0.85380 1.18909 0.92970 0.88567 0.92899 1.20301 0.93786 0.90542 1.46853 0.92608 1.24791 0.94562 0.98810 0.93792 1.69802 1.04771 1.29656 1.47072 0.86762 0.79072 0.83915 0.78887 1.20778 1.21421 1.19619 1.22986 0.99621 1.06770 0.94951 1.22799 0.96193 1.04240 1.01997 0.91321 0.91974 0.92596 0.77184 0.89501 0.92095 0.92079 0.91466 0.91970 0.89447 0.85826 0.99578 0.85459 0.92939 0.92112 0.90427 0.90800 0.92290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.08 10.71 59.85 0.64 1.72 16 2 N -0.75 -9.67 5.28 -67.07 -0.35 -10.03 16 3 C 0.53 8.79 4.78 -10.99 -0.05 8.74 16 4 O -0.51 -10.90 15.76 5.55 0.09 -10.81 16 5 C -0.11 -1.62 3.30 -90.47 -0.30 -1.92 16 6 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 7 C -0.11 -1.52 6.31 -25.07 -0.16 -1.68 16 8 C -0.12 -1.68 6.91 -24.74 -0.17 -1.85 16 9 C -0.11 -1.91 5.81 -25.07 -0.15 -2.05 16 10 C 0.10 1.71 3.21 -66.42 -0.21 1.50 16 11 H 0.03 0.56 8.00 -51.93 -0.42 0.15 16 12 N -0.66 -13.95 5.54 -105.35 -0.58 -14.53 16 13 C 0.09 2.06 5.13 -3.83 -0.02 2.04 16 14 C 0.07 1.70 1.90 -155.66 -0.30 1.40 16 15 C -0.48 -13.50 8.99 -34.44 -0.31 -13.81 16 16 H 0.06 1.61 7.89 -52.49 -0.41 1.19 16 17 C 0.08 2.33 5.09 -17.82 -0.09 2.24 16 18 N -0.88 -24.54 11.04 55.43 0.61 -23.93 16 19 Si 0.89 22.24 29.59 -169.99 -5.03 17.21 16 20 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 22 H -0.27 -7.04 7.11 56.52 0.40 -6.64 16 23 C -0.20 -4.79 9.88 -26.73 -0.26 -5.05 16 24 C -0.21 -4.77 9.52 -26.73 -0.25 -5.02 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.40 3.90 8.83 -40.82 -0.36 3.54 16 29 H 0.09 1.46 6.91 -51.93 -0.36 1.10 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.09 1.86 8.06 -51.93 -0.42 1.44 16 35 H 0.32 6.54 6.29 -39.29 -0.25 6.29 16 36 H -0.01 -0.31 7.88 -51.93 -0.41 -0.72 16 37 H 0.13 3.34 4.96 -51.92 -0.26 3.08 16 38 H 0.26 7.02 8.32 -40.82 -0.34 6.68 16 39 H 0.06 1.33 8.10 -51.93 -0.42 0.91 16 40 H 0.08 1.85 8.14 -51.93 -0.42 1.42 16 41 H 0.07 1.64 8.14 -51.93 -0.42 1.21 16 42 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 334.86 15.07 5.05 5.05 Total: -1.00 -31.64 334.86 -8.94 -40.58 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -7.09 Total: 10.20 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: -1.63 Total: -13.73 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: -0.33 Total: -48.49 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.09 Total: -10.81 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.03 Total: 17.21 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.64 -8.94 -40.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602821551.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.083 kcal (2) G-P(sol) polarization free energy of solvation -31.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds