Wall clock time and date at job start Mon Mar 30 2020 00:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34769 * 120.00150 * 2 1 4 4 O 1.21284 * 120.00351 * 4.24428 * 3 2 1 5 5 C 1.50707 * 120.00163 * 184.24214 * 3 2 1 6 6 H 1.09002 * 110.05160 * 26.52043 * 5 3 2 7 7 C 1.54267 * 110.03150 * 147.93084 * 5 3 2 8 8 C 1.54887 * 104.31105 * 142.96363 * 7 5 3 9 9 C 1.54894 * 102.75120 * 321.99421 * 8 7 5 10 10 C 1.54205 * 110.14731 * 264.96040 * 5 3 2 11 11 H 1.08998 * 110.00628 * 121.43911 * 10 5 3 12 12 N 1.46906 * 110.06764 * 0.05912 * 10 5 3 13 13 C 1.46897 * 111.00388 * 169.51118 * 12 10 5 14 14 C 1.52999 * 109.47127 * 184.03476 * 13 12 10 15 15 C 1.50699 * 115.55110 * 282.45121 * 14 13 12 16 16 H 1.07999 * 119.99718 * 143.78748 * 15 14 13 17 17 C 1.37874 * 119.99996 * 323.78815 * 15 14 13 18 18 N 1.31516 * 120.00322 * 340.04608 * 17 15 14 19 19 Si 1.86803 * 120.00146 * 160.04892 * 17 15 14 20 20 H 1.48506 * 109.47036 * 64.99999 * 19 17 15 21 21 H 1.48496 * 109.47252 * 184.99965 * 19 17 15 22 22 H 1.48501 * 109.46977 * 305.00180 * 19 17 15 23 23 C 1.52997 * 117.49559 * 136.74638 * 14 13 12 24 24 C 1.53002 * 60.00130 * 252.51181 * 23 14 13 25 25 H 1.08999 * 109.47173 * 175.16368 * 1 2 3 26 26 H 1.08999 * 109.46334 * 295.16254 * 1 2 3 27 27 H 1.08993 * 109.46705 * 55.15979 * 1 2 3 28 28 H 0.96998 * 119.99397 * 179.97438 * 2 1 3 29 29 H 1.08995 * 110.48498 * 24.22247 * 7 5 3 30 30 H 1.08995 * 110.48746 * 261.71277 * 7 5 3 31 31 H 1.09003 * 110.75681 * 80.30540 * 8 7 5 32 32 H 1.08995 * 110.76012 * 203.49188 * 8 7 5 33 33 H 1.08996 * 110.48866 * 156.61819 * 9 8 7 34 34 H 1.08995 * 110.48478 * 279.12980 * 9 8 7 35 35 H 1.00907 * 110.99574 * 45.55411 * 12 10 5 36 36 H 1.09000 * 109.46808 * 304.03902 * 13 12 10 37 37 H 1.09007 * 109.46982 * 64.03369 * 13 12 10 38 38 H 0.96992 * 120.00675 * 185.02584 * 18 17 15 39 39 H 1.08996 * 117.50525 * 359.97438 * 23 14 13 40 40 H 1.09001 * 117.49967 * 145.02487 * 23 14 13 41 41 H 1.09000 * 117.49701 * 252.51892 * 24 23 14 42 42 H 1.08993 * 117.52237 * 107.48241 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5351 2.2161 0.0777 5 6 3.6429 1.1689 -0.0965 6 1 3.9855 0.2707 -0.6103 7 6 4.1224 2.4253 -0.8524 8 6 5.4278 2.8342 -0.1260 9 6 5.0992 2.5405 1.3589 10 6 4.2655 1.2433 1.3123 11 1 4.9087 0.3798 1.4818 12 7 3.2066 1.2888 2.3296 13 6 3.7631 1.1098 3.6772 14 6 2.6238 1.0624 4.6973 15 6 2.0192 2.3946 5.0588 16 1 0.9589 2.4726 5.2487 17 6 2.8196 3.5137 5.1472 18 7 4.1182 3.3823 5.3089 19 14 2.0597 5.2166 5.0374 20 1 1.1672 5.4365 6.2037 21 1 3.1359 6.2399 5.0378 22 1 1.2719 5.3272 3.7834 23 6 2.7031 0.0006 5.7959 24 6 1.6909 -0.1497 4.6585 25 1 -0.3633 -1.0240 -0.0866 26 1 -0.3632 0.4370 0.9302 27 1 -0.3632 0.5871 -0.8434 28 1 1.9500 -0.8401 0.0004 29 1 3.3804 3.2205 -0.7799 30 1 4.3251 2.1881 -1.8967 31 1 6.2655 2.2242 -0.4641 32 1 5.6379 3.8932 -0.2758 33 1 6.0152 2.3850 1.9289 34 1 4.5170 3.3553 1.7892 35 1 2.4924 0.6020 2.1390 36 1 4.3256 0.1770 3.7170 37 1 4.4253 1.9436 3.9106 38 1 4.6720 4.1671 5.4441 39 1 3.5667 -0.6645 5.7918 40 1 2.3180 0.2654 6.7806 41 1 0.6399 0.0165 4.8949 42 1 1.8885 -0.9131 3.9060 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602821551.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:23 Heat of formation + Delta-G solvation = -34.277991 kcal Electronic energy + Delta-G solvation = -21774.704000 eV Core-core repulsion = 18754.232578 eV Total energy + Delta-G solvation = -3020.471423 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.24707 -38.98512 -37.98846 -35.50489 -34.32189 -34.16395 -30.69037 -28.60733 -27.58591 -27.23062 -25.31024 -22.96027 -22.50756 -21.53327 -20.80664 -20.40520 -18.29980 -18.11646 -17.01201 -16.72208 -16.60154 -16.31389 -15.69809 -15.56765 -15.11985 -14.92031 -14.49406 -14.45014 -13.82004 -13.54768 -13.23433 -13.06426 -12.86102 -12.81590 -12.56437 -12.42766 -12.21452 -12.06190 -11.95728 -11.90663 -11.79627 -11.45593 -11.09362 -11.03503 -10.72056 -10.57049 -10.01269 -9.91022 -8.97481 -8.07952 -6.06250 1.34682 1.40907 1.50411 1.78818 2.40318 2.42481 3.01231 3.34513 3.61107 3.72074 3.73116 4.00731 4.31553 4.33047 4.45839 4.48028 4.52839 4.55546 4.55755 4.67774 4.68733 4.77187 4.79439 4.89890 4.93031 5.00551 5.07836 5.08134 5.17252 5.22755 5.28230 5.38354 5.52895 5.55284 5.61411 5.65432 6.12973 6.40909 6.50078 6.69242 6.80334 6.87853 7.45372 7.50587 8.93792 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.014906 B = 0.008154 C = 0.007073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.944338 B = 3433.121476 C = 3957.717841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.730 5.730 3 C 0.521 3.479 4 O -0.571 6.571 5 C -0.105 4.105 6 H 0.130 0.870 7 C -0.106 4.106 8 C -0.110 4.110 9 C -0.113 4.113 10 C 0.095 3.905 11 H 0.056 0.944 12 N -0.678 5.678 13 C 0.100 3.900 14 C 0.033 3.967 15 C -0.501 4.501 16 H 0.037 0.963 17 C 0.049 3.951 18 N -0.888 5.888 19 Si 0.931 3.069 20 H -0.273 1.273 21 H -0.279 1.279 22 H -0.289 1.289 23 C -0.202 4.202 24 C -0.190 4.190 25 H 0.112 0.888 26 H 0.032 0.968 27 H 0.051 0.949 28 H 0.415 0.585 29 H 0.050 0.950 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.035 0.965 35 H 0.326 0.674 36 H -0.004 1.004 37 H 0.098 0.902 38 H 0.261 0.739 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.035 -9.608 -13.932 17.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.384 5.384 3 C 0.308 3.692 4 O -0.449 6.449 5 C -0.127 4.127 6 H 0.148 0.852 7 C -0.144 4.144 8 C -0.147 4.147 9 C -0.151 4.151 10 C -0.016 4.016 11 H 0.074 0.926 12 N -0.311 5.311 13 C -0.028 4.028 14 C 0.032 3.968 15 C -0.538 4.538 16 H 0.056 0.944 17 C -0.152 4.152 18 N -0.525 5.525 19 Si 0.758 3.242 20 H -0.199 1.199 21 H -0.204 1.204 22 H -0.215 1.215 23 C -0.241 4.241 24 C -0.227 4.227 25 H 0.130 0.870 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.251 0.749 29 H 0.068 0.932 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.054 0.946 35 H 0.146 0.854 36 H 0.014 0.986 37 H 0.116 0.884 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.754 -8.059 -13.885 16.150 hybrid contribution -0.347 -0.176 0.654 0.761 sum 1.407 -8.234 -13.231 15.648 Atomic orbital electron populations 1.21564 0.79478 1.03856 1.00752 1.45799 1.08096 1.08526 1.75933 1.20716 0.90559 0.83512 0.74365 1.90677 1.71072 1.33465 1.49665 1.22239 0.90539 1.02775 0.97102 0.85214 1.22284 0.97187 0.95539 0.99419 1.22433 0.97505 1.01838 0.92969 1.22326 0.98211 0.96833 0.97726 1.22225 0.92160 0.97697 0.89474 0.92597 1.60494 1.12844 1.55942 1.01826 1.21548 0.96116 0.98702 0.86427 1.19015 0.94947 0.88203 0.94629 1.20517 0.93079 0.92755 1.47433 0.94446 1.25260 0.95057 1.01018 0.93912 1.69880 1.05170 1.30073 1.47424 0.86051 0.78558 0.81522 0.78059 1.19853 1.20450 1.21504 1.22951 1.00656 1.06119 0.94360 1.22779 0.95452 1.02884 1.01619 0.86984 0.94882 0.93039 0.74930 0.93154 0.88520 0.88629 0.91346 0.92181 0.94563 0.85389 0.98567 0.88394 0.92937 0.90403 0.91597 0.91193 0.89425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.95 10.71 127.77 1.37 3.32 16 2 N -0.73 -17.12 5.28 -484.52 -2.56 -19.68 16 3 C 0.52 16.66 4.78 87.66 0.42 17.08 16 4 O -0.57 -24.78 15.76 -3.04 -0.05 -24.83 16 5 C -0.10 -2.76 3.30 -10.70 -0.04 -2.80 16 6 H 0.13 2.20 8.14 -2.39 -0.02 2.18 16 7 C -0.11 -2.78 6.31 31.67 0.20 -2.58 16 8 C -0.11 -2.79 6.91 31.89 0.22 -2.57 16 9 C -0.11 -3.93 5.81 31.67 0.18 -3.74 16 10 C 0.09 3.11 3.21 45.75 0.15 3.25 16 11 H 0.06 1.63 8.00 -2.39 -0.02 1.61 16 12 N -0.68 -28.38 5.54 -487.23 -2.70 -31.08 16 13 C 0.10 4.73 5.13 86.30 0.44 5.17 16 14 C 0.03 1.66 1.90 -52.93 -0.10 1.56 16 15 C -0.50 -28.99 8.99 25.60 0.23 -28.76 16 16 H 0.04 2.23 7.89 -2.91 -0.02 2.20 16 17 C 0.05 2.80 5.09 84.65 0.43 3.23 16 18 N -0.89 -50.90 11.04 21.45 0.24 -50.66 16 19 Si 0.93 47.02 29.59 68.60 2.03 49.05 16 20 H -0.27 -13.29 7.11 99.48 0.71 -12.59 16 21 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 22 H -0.29 -15.32 7.11 99.48 0.71 -14.61 16 23 C -0.20 -9.28 9.88 30.59 0.30 -8.98 16 24 C -0.19 -8.16 9.52 30.60 0.29 -7.87 16 25 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.41 6.51 8.83 -92.71 -0.82 5.70 16 29 H 0.05 1.71 6.91 -2.39 -0.02 1.69 16 30 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.04 1.61 8.06 -2.39 -0.02 1.59 16 35 H 0.33 12.85 6.29 -89.69 -0.56 12.28 16 36 H 0.00 -0.16 7.88 -2.39 -0.02 -0.18 16 37 H 0.10 5.24 4.96 -2.38 -0.01 5.23 16 38 H 0.26 14.36 8.32 -92.71 -0.77 13.59 16 39 H 0.08 3.27 8.10 -2.39 -0.02 3.25 16 40 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 41 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 42 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 Total: -1.00 -72.22 334.86 0.69 -71.53 By element: Atomic # 1 Polarization: 29.74 SS G_CDS: -0.37 Total: 29.36 kcal Atomic # 6 Polarization: -27.79 SS G_CDS: 4.10 Total: -23.69 kcal Atomic # 7 Polarization: -96.39 SS G_CDS: -5.02 Total: -101.41 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.05 Total: -24.83 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -72.22 0.69 -71.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602821551.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.252 kcal (2) G-P(sol) polarization free energy of solvation -72.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds