Wall clock time and date at job start Mon Mar 30 2020 01:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.46738 * 2 1 4 4 C 1.53006 * 109.47050 * 119.99630 * 2 1 3 5 5 H 1.08996 * 109.48859 * 173.26386 * 4 2 1 6 6 C 1.53059 * 109.50527 * 293.31490 * 4 2 1 7 7 N 1.46957 * 109.36161 * 178.38231 * 6 4 2 8 8 C 1.46898 * 110.99803 * 176.81124 * 7 6 4 9 9 C 1.52999 * 109.46880 * 196.38070 * 8 7 6 10 10 C 1.50704 * 115.54935 * 270.67933 * 9 8 7 11 11 H 1.07995 * 119.99868 * 146.01489 * 10 9 8 12 12 C 1.37870 * 119.99976 * 326.01182 * 10 9 8 13 13 N 1.31507 * 120.00517 * 338.42256 * 12 10 9 14 14 Si 1.86803 * 119.99910 * 158.41791 * 12 10 9 15 15 H 1.48501 * 109.47009 * 90.00245 * 14 12 10 16 16 H 1.48498 * 109.47377 * 210.00553 * 14 12 10 17 17 H 1.48505 * 109.47049 * 330.00498 * 14 12 10 18 18 C 1.52999 * 117.49513 * 124.97699 * 9 8 7 19 19 C 1.52994 * 117.49883 * 56.35445 * 9 8 7 20 20 C 1.46961 * 110.89485 * 300.68482 * 7 6 4 21 21 C 1.53050 * 109.36408 * 59.29319 * 20 7 6 22 22 N 1.46955 * 109.38158 * 301.62888 * 21 20 7 23 23 C 1.46903 * 111.00348 * 183.17505 * 22 21 20 24 24 H 1.09000 * 109.47892 * 306.09344 * 1 2 3 25 25 H 1.08998 * 109.47349 * 66.09756 * 1 2 3 26 26 H 1.09003 * 109.47072 * 186.09442 * 1 2 3 27 27 H 1.08994 * 109.47339 * 239.99773 * 2 1 3 28 28 H 1.09003 * 109.46411 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.46947 * 299.99327 * 3 2 1 30 30 H 1.08994 * 109.47391 * 59.99805 * 3 2 1 31 31 H 1.09000 * 109.48452 * 298.34884 * 6 4 2 32 32 H 1.08996 * 109.48776 * 58.40929 * 6 4 2 33 33 H 1.09000 * 109.47164 * 316.38372 * 8 7 6 34 34 H 1.09004 * 109.47195 * 76.37909 * 8 7 6 35 35 H 0.97007 * 120.00739 * 185.02072 * 13 12 10 36 36 H 1.08998 * 117.50236 * 359.97438 * 18 9 8 37 37 H 1.09001 * 117.49722 * 145.01929 * 18 9 8 38 38 H 1.09002 * 117.49919 * 214.97942 * 19 9 8 39 39 H 1.08994 * 117.50067 * 359.97145 * 19 9 8 40 40 H 1.09000 * 109.47179 * 299.33522 * 20 7 6 41 41 H 1.09005 * 109.50302 * 179.26772 * 20 7 6 42 42 H 1.08996 * 109.48961 * 181.65088 * 21 20 7 43 43 H 1.09000 * 109.48955 * 61.60446 * 21 20 7 44 44 H 1.08998 * 109.46663 * 53.92688 * 23 22 21 45 45 H 1.08997 * 109.47542 * 173.92913 * 23 22 21 46 46 H 1.09002 * 109.46936 * 293.92816 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1232 -0.8269 1.1914 6 6 1.6719 0.0902 2.4939 7 7 2.1290 -0.6242 3.6940 8 6 1.8611 0.1596 4.9072 9 6 2.6908 -0.3955 6.0666 10 6 2.0344 -1.4877 6.8711 11 1 2.6329 -2.2813 7.2935 12 6 0.6699 -1.4738 7.0680 13 7 -0.0008 -0.3492 6.9454 14 14 -0.2263 -3.0524 7.5089 15 1 -0.2649 -3.2038 8.9856 16 1 -1.6131 -2.9985 6.9804 17 1 0.4866 -4.2098 6.9110 18 6 3.6046 0.5796 6.8117 19 6 4.2071 -0.4715 5.8772 20 6 1.5107 -1.9546 3.7794 21 6 1.8782 -2.7658 2.5347 22 7 1.4212 -2.0514 1.3345 23 6 1.6891 -2.8352 0.1212 24 1 -0.3635 0.6054 0.8304 25 1 -0.3634 0.4164 -0.9395 26 1 -0.3633 -1.0219 0.1091 27 1 1.8933 -0.5138 -0.8899 28 1 3.1299 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6765 1.9564 0.8899 31 1 2.1534 1.0670 2.4466 32 1 0.5905 0.2193 2.5371 33 1 2.1306 1.2014 4.7336 34 1 0.8016 0.0949 5.1550 35 1 -0.9477 -0.3238 7.1546 36 1 3.6149 1.6164 6.4756 37 1 3.7310 0.4313 7.8841 38 1 4.7300 -1.3113 6.3349 39 1 4.6135 -0.1264 4.9266 40 1 0.4274 -1.8487 3.8377 41 1 1.8746 -2.4687 4.6690 42 1 1.3967 -3.7425 2.5819 43 1 2.9596 -2.8952 2.4911 44 1 1.2544 -3.8291 0.2275 45 1 1.2460 -2.3349 -0.7398 46 1 2.7658 -2.9231 -0.0241 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602832156.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:28 Heat of formation + Delta-G solvation = 35.948126 kcal Electronic energy + Delta-G solvation = -22312.880020 eV Core-core repulsion = 19431.286925 eV Total energy + Delta-G solvation = -2881.593095 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.44690 -36.91877 -34.79086 -33.93227 -32.20313 -29.22319 -28.28553 -26.94918 -25.71827 -24.64948 -23.70748 -22.33838 -20.94908 -20.30011 -18.76787 -18.40892 -16.11770 -15.69502 -15.19009 -14.89476 -14.64757 -14.38928 -14.03470 -13.62049 -13.34861 -13.21200 -13.00060 -12.59361 -12.42417 -12.18863 -11.79611 -11.75603 -11.45348 -11.35843 -11.07062 -10.89648 -10.83043 -10.63767 -10.58067 -10.35777 -10.29480 -10.14567 -10.09088 -9.89447 -9.10460 -8.93728 -8.58542 -8.08285 -8.00863 -7.20248 -6.07957 -4.01738 3.24520 3.34328 3.38396 4.19014 4.35925 4.69670 4.93388 5.00768 5.13959 5.25016 5.39243 5.52335 5.61446 5.64316 5.67420 5.74882 5.78397 5.92494 5.96440 5.97267 6.01177 6.05809 6.08437 6.16936 6.24348 6.34701 6.37277 6.50742 6.55825 6.61180 6.70845 6.72827 6.90245 6.91841 7.04330 7.13044 7.25396 7.36811 7.42194 7.50421 7.58894 7.93761 8.17337 8.20597 8.52882 8.90678 9.50233 10.92640 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.019530 B = 0.006825 C = 0.006028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.316707 B = 4101.332285 C = 4643.838579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 C -0.148 4.148 4 C 0.095 3.905 5 H 0.043 0.957 6 C 0.061 3.939 7 N -0.534 5.534 8 C 0.083 3.917 9 C 0.062 3.938 10 C -0.489 4.489 11 H 0.060 0.940 12 C 0.076 3.924 13 N -0.868 5.868 14 Si 0.875 3.125 15 H -0.281 1.281 16 H -0.284 1.284 17 H -0.270 1.270 18 C -0.208 4.208 19 C -0.192 4.192 20 C 0.064 3.936 21 C 0.057 3.943 22 N -0.537 5.537 23 C 0.023 3.977 24 H 0.054 0.946 25 H 0.041 0.959 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.035 0.965 33 H 0.035 0.965 34 H 0.091 0.909 35 H 0.262 0.738 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.029 0.971 41 H 0.104 0.896 42 H 0.069 0.931 43 H 0.036 0.964 44 H 0.062 0.938 45 H 0.066 0.934 46 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.559 -0.455 -13.194 13.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.108 4.108 3 C -0.206 4.206 4 C -0.013 4.013 5 H 0.061 0.939 6 C -0.068 4.068 7 N -0.258 5.258 8 C -0.044 4.044 9 C 0.061 3.939 10 C -0.526 4.526 11 H 0.078 0.922 12 C -0.127 4.127 13 N -0.505 5.505 14 Si 0.702 3.298 15 H -0.207 1.207 16 H -0.210 1.210 17 H -0.194 1.194 18 C -0.247 4.247 19 C -0.229 4.229 20 C -0.064 4.064 21 C -0.071 4.071 22 N -0.261 5.261 23 C -0.125 4.125 24 H 0.073 0.927 25 H 0.060 0.940 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.109 0.891 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.048 0.952 41 H 0.122 0.878 42 H 0.088 0.912 43 H 0.055 0.945 44 H 0.081 0.919 45 H 0.085 0.915 46 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 1.337 -0.395 -13.225 13.299 hybrid contribution -0.402 -0.742 0.320 0.903 sum 0.935 -1.137 -12.905 12.989 Atomic orbital electron populations 1.21772 0.94595 1.02918 1.00411 1.21146 0.96839 0.95764 0.97038 1.21896 1.00828 0.96035 1.01851 1.21666 0.96072 0.88885 0.94726 0.93895 1.22197 0.98300 0.96386 0.89889 1.62139 1.58109 1.03195 1.02368 1.21858 1.03188 0.92684 0.86626 1.18830 0.86303 0.95223 0.93507 1.20511 0.91484 1.07953 1.32673 0.92212 1.24911 0.97529 0.95583 0.94688 1.69921 1.09346 1.24656 1.46559 0.86861 0.79355 0.84969 0.78655 1.20686 1.20971 1.19420 1.22998 1.10932 0.93834 0.96904 1.22653 1.00348 1.00785 0.99151 1.22192 0.96846 0.90379 0.97028 1.22273 0.98068 0.96815 0.89945 1.62181 1.58721 1.02850 1.02383 1.22375 0.98616 0.98093 0.93439 0.92705 0.94013 0.91274 0.91748 0.92874 0.92950 0.91991 0.91261 0.94687 0.94693 0.89108 0.92807 0.92173 0.90852 0.91468 0.91111 0.95239 0.87806 0.91218 0.94539 0.91928 0.91504 0.96162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 8.51 37.16 0.32 -1.44 16 2 C -0.09 -1.10 2.22 -90.62 -0.20 -1.30 16 3 C -0.15 -1.69 8.65 37.16 0.32 -1.37 16 4 C 0.10 1.44 1.86 -67.65 -0.13 1.32 16 5 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 6 C 0.06 1.08 4.08 -3.76 -0.02 1.06 16 7 N -0.53 -10.98 4.47 -234.46 -1.05 -12.03 16 8 C 0.08 1.94 4.76 -3.83 -0.02 1.92 16 9 C 0.06 1.53 1.63 -155.66 -0.25 1.28 16 10 C -0.49 -12.95 7.13 -34.44 -0.25 -13.19 16 11 H 0.06 1.61 7.90 -52.49 -0.41 1.19 16 12 C 0.08 2.00 4.99 -17.83 -0.09 1.91 16 13 N -0.87 -23.63 11.08 55.43 0.61 -23.01 16 14 Si 0.87 20.38 29.59 -169.99 -5.03 15.35 16 15 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 18 C -0.21 -4.87 9.88 -26.73 -0.26 -5.13 16 19 C -0.19 -4.31 9.76 -26.73 -0.26 -4.57 16 20 C 0.06 1.31 5.32 -3.77 -0.02 1.29 16 21 C 0.06 0.97 5.62 -3.77 -0.02 0.95 16 22 N -0.54 -8.23 3.74 -234.72 -0.88 -9.11 16 23 C 0.02 0.29 8.78 60.07 0.53 0.81 16 24 H 0.05 0.75 6.88 -51.93 -0.36 0.39 16 25 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.93 6.64 -51.93 -0.34 0.59 16 27 H 0.06 0.74 6.81 -51.93 -0.35 0.39 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.76 6.37 -51.93 -0.33 0.42 16 31 H 0.07 1.18 6.31 -51.93 -0.33 0.85 16 32 H 0.03 0.66 6.69 -51.93 -0.35 0.32 16 33 H 0.03 0.80 7.64 -51.93 -0.40 0.40 16 34 H 0.09 2.38 5.14 -51.93 -0.27 2.11 16 35 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 36 H 0.06 1.33 8.03 -51.93 -0.42 0.91 16 37 H 0.07 1.74 8.14 -51.93 -0.42 1.31 16 38 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 39 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 40 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.10 2.38 6.02 -51.93 -0.31 2.07 16 42 H 0.07 1.10 8.11 -51.93 -0.42 0.68 16 43 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 45 H 0.07 0.75 6.04 -51.93 -0.31 0.43 16 46 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 LS Contribution 339.82 15.07 5.12 5.12 Total: -1.00 -26.46 339.82 -9.96 -36.42 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -8.39 Total: 3.71 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: -0.35 Total: -16.45 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: -1.31 Total: -44.15 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.03 Total: 15.35 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -26.46 -9.96 -36.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602832156.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.372 kcal (2) G-P(sol) polarization free energy of solvation -26.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds