Wall clock time and date at job start Mon Mar 30 2020 01:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.46738 * 2 1 4 4 C 1.53006 * 109.47050 * 119.99630 * 2 1 3 5 5 H 1.08996 * 109.48859 * 173.26386 * 4 2 1 6 6 C 1.53059 * 109.50527 * 293.31490 * 4 2 1 7 7 N 1.46957 * 109.36161 * 178.38231 * 6 4 2 8 8 C 1.46898 * 110.99803 * 176.81124 * 7 6 4 9 9 C 1.52999 * 109.46880 * 196.38070 * 8 7 6 10 10 C 1.50704 * 115.54935 * 270.67933 * 9 8 7 11 11 H 1.07995 * 119.99868 * 146.01489 * 10 9 8 12 12 C 1.37870 * 119.99976 * 326.01182 * 10 9 8 13 13 N 1.31507 * 120.00517 * 338.42256 * 12 10 9 14 14 Si 1.86803 * 119.99910 * 158.41791 * 12 10 9 15 15 H 1.48501 * 109.47009 * 90.00245 * 14 12 10 16 16 H 1.48498 * 109.47377 * 210.00553 * 14 12 10 17 17 H 1.48505 * 109.47049 * 330.00498 * 14 12 10 18 18 C 1.52999 * 117.49513 * 124.97699 * 9 8 7 19 19 C 1.52994 * 117.49883 * 56.35445 * 9 8 7 20 20 C 1.46961 * 110.89485 * 300.68482 * 7 6 4 21 21 C 1.53050 * 109.36408 * 59.29319 * 20 7 6 22 22 N 1.46955 * 109.38158 * 301.62888 * 21 20 7 23 23 C 1.46903 * 111.00348 * 183.17505 * 22 21 20 24 24 H 1.09000 * 109.47892 * 306.09344 * 1 2 3 25 25 H 1.08998 * 109.47349 * 66.09756 * 1 2 3 26 26 H 1.09003 * 109.47072 * 186.09442 * 1 2 3 27 27 H 1.08994 * 109.47339 * 239.99773 * 2 1 3 28 28 H 1.09003 * 109.46411 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.46947 * 299.99327 * 3 2 1 30 30 H 1.08994 * 109.47391 * 59.99805 * 3 2 1 31 31 H 1.09000 * 109.48452 * 298.34884 * 6 4 2 32 32 H 1.08996 * 109.48776 * 58.40929 * 6 4 2 33 33 H 1.09000 * 109.47164 * 316.38372 * 8 7 6 34 34 H 1.09004 * 109.47195 * 76.37909 * 8 7 6 35 35 H 0.97007 * 120.00739 * 185.02072 * 13 12 10 36 36 H 1.08998 * 117.50236 * 359.97438 * 18 9 8 37 37 H 1.09001 * 117.49722 * 145.01929 * 18 9 8 38 38 H 1.09002 * 117.49919 * 214.97942 * 19 9 8 39 39 H 1.08994 * 117.50067 * 359.97145 * 19 9 8 40 40 H 1.09000 * 109.47179 * 299.33522 * 20 7 6 41 41 H 1.09005 * 109.50302 * 179.26772 * 20 7 6 42 42 H 1.08996 * 109.48961 * 181.65088 * 21 20 7 43 43 H 1.09000 * 109.48955 * 61.60446 * 21 20 7 44 44 H 1.08998 * 109.46663 * 53.92688 * 23 22 21 45 45 H 1.08997 * 109.47542 * 173.92913 * 23 22 21 46 46 H 1.09002 * 109.46936 * 293.92816 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1232 -0.8269 1.1914 6 6 1.6719 0.0902 2.4939 7 7 2.1290 -0.6242 3.6940 8 6 1.8611 0.1596 4.9072 9 6 2.6908 -0.3955 6.0666 10 6 2.0344 -1.4877 6.8711 11 1 2.6329 -2.2813 7.2935 12 6 0.6699 -1.4738 7.0680 13 7 -0.0008 -0.3492 6.9454 14 14 -0.2263 -3.0524 7.5089 15 1 -0.2649 -3.2038 8.9856 16 1 -1.6131 -2.9985 6.9804 17 1 0.4866 -4.2098 6.9110 18 6 3.6046 0.5796 6.8117 19 6 4.2071 -0.4715 5.8772 20 6 1.5107 -1.9546 3.7794 21 6 1.8782 -2.7658 2.5347 22 7 1.4212 -2.0514 1.3345 23 6 1.6891 -2.8352 0.1212 24 1 -0.3635 0.6054 0.8304 25 1 -0.3634 0.4164 -0.9395 26 1 -0.3633 -1.0219 0.1091 27 1 1.8933 -0.5138 -0.8899 28 1 3.1299 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6765 1.9564 0.8899 31 1 2.1534 1.0670 2.4466 32 1 0.5905 0.2193 2.5371 33 1 2.1306 1.2014 4.7336 34 1 0.8016 0.0949 5.1550 35 1 -0.9477 -0.3238 7.1546 36 1 3.6149 1.6164 6.4756 37 1 3.7310 0.4313 7.8841 38 1 4.7300 -1.3113 6.3349 39 1 4.6135 -0.1264 4.9266 40 1 0.4274 -1.8487 3.8377 41 1 1.8746 -2.4687 4.6690 42 1 1.3967 -3.7425 2.5819 43 1 2.9596 -2.8952 2.4911 44 1 1.2544 -3.8291 0.2275 45 1 1.2460 -2.3349 -0.7398 46 1 2.7658 -2.9231 -0.0241 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602832156.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:27 Heat of formation + Delta-G solvation = 21.350802 kcal Electronic energy + Delta-G solvation = -22313.513008 eV Core-core repulsion = 19431.286925 eV Total energy + Delta-G solvation = -2882.226083 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.79682 -38.64891 -36.14267 -35.30556 -34.23250 -30.60536 -29.66919 -27.92654 -27.67446 -26.16666 -25.03076 -23.73871 -22.80178 -21.72023 -20.65501 -19.65837 -18.05008 -17.03050 -16.74201 -16.35269 -16.13407 -15.81723 -15.65838 -15.04024 -14.89435 -14.68085 -14.34490 -14.09576 -13.59768 -13.47706 -13.27812 -13.09364 -12.92965 -12.78397 -12.66490 -12.49298 -12.34919 -12.21644 -12.02699 -11.92324 -11.88939 -11.63794 -11.40912 -11.33104 -10.88202 -10.83374 -10.50500 -10.00613 -9.23050 -8.94510 -8.10109 -6.09185 1.35947 1.42199 1.50422 2.40004 2.94801 3.00883 3.17729 3.80476 3.84801 3.98158 4.11713 4.28345 4.32402 4.37762 4.40312 4.50330 4.52726 4.65214 4.70475 4.71850 4.77483 4.80720 4.86853 4.87448 4.97047 5.03259 5.05364 5.06541 5.11289 5.13511 5.19439 5.24386 5.26313 5.34957 5.40053 5.49725 5.58525 5.59137 5.64231 5.97173 6.13208 6.19673 6.41253 6.51236 6.53163 6.87545 7.44471 8.89129 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.019530 B = 0.006825 C = 0.006028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.316707 B = 4101.332285 C = 4643.838579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.082 4.082 3 C -0.146 4.146 4 C 0.101 3.899 5 H 0.037 0.963 6 C 0.063 3.937 7 N -0.533 5.533 8 C 0.095 3.905 9 C 0.037 3.963 10 C -0.502 4.502 11 H 0.049 0.951 12 C 0.042 3.958 13 N -0.892 5.892 14 Si 0.926 3.074 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.264 1.264 18 C -0.210 4.210 19 C -0.170 4.170 20 C 0.072 3.928 21 C 0.066 3.934 22 N -0.546 5.546 23 C 0.025 3.975 24 H 0.035 0.965 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.084 0.916 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.047 0.953 31 H 0.075 0.925 32 H 0.019 0.981 33 H 0.033 0.967 34 H 0.062 0.938 35 H 0.261 0.739 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.002 0.998 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.036 0.964 44 H 0.072 0.928 45 H 0.083 0.917 46 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.071 -1.008 -15.376 15.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.101 4.101 3 C -0.204 4.204 4 C -0.008 4.008 5 H 0.055 0.945 6 C -0.065 4.065 7 N -0.257 5.257 8 C -0.033 4.033 9 C 0.036 3.964 10 C -0.539 4.539 11 H 0.067 0.933 12 C -0.159 4.159 13 N -0.530 5.530 14 Si 0.751 3.249 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.188 1.188 18 C -0.248 4.248 19 C -0.207 4.207 20 C -0.057 4.057 21 C -0.062 4.062 22 N -0.271 5.271 23 C -0.123 4.123 24 H 0.054 0.946 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.102 0.898 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.037 0.963 33 H 0.051 0.949 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.101 0.899 40 H 0.020 0.980 41 H 0.095 0.905 42 H 0.101 0.899 43 H 0.054 0.946 44 H 0.090 0.910 45 H 0.102 0.898 46 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 1.861 -0.954 -15.418 15.559 hybrid contribution -0.551 -0.537 1.000 1.262 sum 1.310 -1.492 -14.418 14.554 Atomic orbital electron populations 1.21720 0.94687 1.02066 1.00763 1.21134 0.96611 0.96249 0.96093 1.21878 1.01104 0.95286 1.02151 1.21634 0.95757 0.88833 0.94548 0.94456 1.22266 0.97274 0.97090 0.89911 1.62151 1.58037 1.03181 1.02310 1.21577 1.01117 0.92886 0.87685 1.18947 0.87574 0.95658 0.94229 1.20648 0.91950 1.08286 1.33050 0.93284 1.25423 0.97990 0.97695 0.94794 1.70024 1.09371 1.26098 1.47458 0.86051 0.78219 0.82182 0.78405 1.20368 1.20996 1.18779 1.22994 1.10662 0.94525 0.96647 1.22592 0.98695 1.00203 0.99243 1.22012 0.94874 0.90696 0.98068 1.22112 0.98097 0.96772 0.89218 1.62162 1.58839 1.03160 1.02943 1.22440 0.99259 0.98312 0.92262 0.94600 0.91869 0.92239 0.89753 0.92437 0.91021 0.93361 0.90648 0.96313 0.94870 0.92060 0.92925 0.91091 0.91631 0.91270 0.89919 0.97960 0.90489 0.89872 0.94573 0.90967 0.89848 0.95562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.51 71.98 0.61 -2.50 16 2 C -0.08 -1.81 2.22 -10.79 -0.02 -1.84 16 3 C -0.15 -2.97 8.65 71.98 0.62 -2.35 16 4 C 0.10 2.89 1.86 44.93 0.08 2.98 16 5 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 6 C 0.06 2.21 4.08 86.31 0.35 2.56 16 7 N -0.53 -22.09 4.47 -895.69 -4.01 -26.10 16 8 C 0.09 4.53 4.76 86.30 0.41 4.94 16 9 C 0.04 1.83 1.63 -52.93 -0.09 1.74 16 10 C -0.50 -27.09 7.13 25.60 0.18 -26.91 16 11 H 0.05 2.68 7.90 -2.91 -0.02 2.66 16 12 C 0.04 2.26 4.99 84.65 0.42 2.68 16 13 N -0.89 -49.80 11.08 21.44 0.24 -49.56 16 14 Si 0.93 42.44 29.59 68.60 2.03 44.47 16 15 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 16 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 17 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 18 C -0.21 -9.79 9.88 30.59 0.30 -9.49 16 19 C -0.17 -7.52 9.76 30.59 0.30 -7.22 16 20 C 0.07 3.01 5.32 86.31 0.46 3.47 16 21 C 0.07 2.19 5.62 86.31 0.48 2.67 16 22 N -0.55 -15.80 3.74 -896.53 -3.35 -19.15 16 23 C 0.02 0.54 8.78 127.69 1.12 1.66 16 24 H 0.03 0.95 6.88 -2.39 -0.02 0.93 16 25 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.06 1.49 6.64 -2.39 -0.02 1.47 16 27 H 0.08 1.60 6.81 -2.39 -0.02 1.58 16 28 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.05 1.11 6.37 -2.39 -0.02 1.09 16 31 H 0.08 2.53 6.31 -2.39 -0.02 2.52 16 32 H 0.02 0.72 6.69 -2.39 -0.02 0.71 16 33 H 0.03 1.55 7.64 -2.39 -0.02 1.53 16 34 H 0.06 3.33 5.14 -2.39 -0.01 3.32 16 35 H 0.26 14.00 8.32 -92.70 -0.77 13.23 16 36 H 0.07 3.11 8.03 -2.39 -0.02 3.09 16 37 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 38 H 0.07 3.01 8.14 -2.39 -0.02 3.00 16 39 H 0.08 3.45 8.14 -2.39 -0.02 3.43 16 40 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 41 H 0.08 3.62 6.02 -2.38 -0.01 3.60 16 42 H 0.08 2.50 8.11 -2.39 -0.02 2.48 16 43 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.07 1.44 8.10 -2.39 -0.02 1.42 16 45 H 0.08 1.54 6.04 -2.39 -0.01 1.53 16 46 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -57.09 339.82 1.07 -56.02 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: 0.92 Total: 21.91 kcal Atomic # 6 Polarization: -32.84 SS G_CDS: 5.24 Total: -27.60 kcal Atomic # 7 Polarization: -87.68 SS G_CDS: -7.12 Total: -94.80 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -57.09 1.07 -56.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602832156.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.369 kcal (2) G-P(sol) polarization free energy of solvation -57.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds