Wall clock time and date at job start Mon Mar 30 2020 01:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46956 * 2 1 4 4 C 1.53002 * 109.47309 * 119.99455 * 2 1 3 5 5 H 1.09006 * 109.48623 * 59.87486 * 4 2 1 6 6 C 1.53053 * 109.48919 * 299.81372 * 4 2 1 7 7 N 1.46955 * 109.36383 * 181.62933 * 6 4 2 8 8 C 1.46903 * 111.00117 * 183.18695 * 7 6 4 9 9 C 1.52999 * 109.46730 * 312.07908 * 8 7 6 10 10 C 1.50697 * 115.56469 * 79.24950 * 9 8 7 11 11 H 1.07996 * 120.00182 * 219.29198 * 10 9 8 12 12 C 1.37884 * 120.00085 * 39.29265 * 10 9 8 13 13 N 1.31507 * 119.99684 * 11.70231 * 12 10 9 14 14 Si 1.86798 * 119.99898 * 191.70427 * 12 10 9 15 15 H 1.48500 * 109.47305 * 89.99822 * 14 12 10 16 16 H 1.48494 * 109.46943 * 209.99815 * 14 12 10 17 17 H 1.48494 * 109.47433 * 329.99992 * 14 12 10 18 18 C 1.52999 * 117.49909 * 293.55332 * 9 8 7 19 19 C 1.53000 * 60.00321 * 252.51547 * 18 9 8 20 20 C 1.46953 * 110.88014 * 59.31864 * 7 6 4 21 21 C 1.53049 * 109.36446 * 300.67688 * 20 7 6 22 22 N 1.46953 * 109.49008 * 179.97438 * 4 2 1 23 23 C 1.46894 * 111.00114 * 303.15438 * 22 4 2 24 24 H 1.09001 * 109.46750 * 185.57027 * 1 2 3 25 25 H 1.08994 * 109.47060 * 305.57137 * 1 2 3 26 26 H 1.08996 * 109.46638 * 65.57219 * 1 2 3 27 27 H 1.08993 * 109.47240 * 239.99766 * 2 1 3 28 28 H 1.09004 * 109.47492 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.46793 * 299.99620 * 3 2 1 30 30 H 1.09001 * 109.47557 * 59.99580 * 3 2 1 31 31 H 1.09003 * 109.48965 * 61.65841 * 6 4 2 32 32 H 1.09000 * 109.48520 * 301.59592 * 6 4 2 33 33 H 1.08997 * 109.47549 * 192.07665 * 8 7 6 34 34 H 1.09003 * 109.46961 * 72.07107 * 8 7 6 35 35 H 0.97005 * 119.99722 * 174.99636 * 13 12 10 36 36 H 1.08996 * 117.49965 * 145.02449 * 18 9 8 37 37 H 1.09001 * 117.49562 * 0.02562 * 18 9 8 38 38 H 1.09000 * 117.50211 * 107.49020 * 19 18 9 39 39 H 1.09005 * 117.49721 * 252.51469 * 19 18 9 40 40 H 1.08993 * 109.49103 * 60.64895 * 20 7 6 41 41 H 1.09006 * 109.49047 * 180.68978 * 20 7 6 42 42 H 1.09009 * 109.48859 * 178.36763 * 21 20 7 43 43 H 1.09000 * 109.49238 * 298.41440 * 21 20 7 44 44 H 1.09000 * 109.47465 * 299.14103 * 23 22 4 45 45 H 1.09003 * 109.46782 * 59.14524 * 23 22 4 46 46 H 1.09001 * 109.47209 * 179.13889 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7211 1.2493 5 1 1.6751 -1.7483 1.2508 6 6 1.5340 0.0029 2.4992 7 7 2.0574 -0.6689 3.6969 8 6 1.5322 -0.0483 4.9204 9 6 1.6800 1.4716 4.8251 10 6 0.6383 2.1754 3.9942 11 1 0.9224 2.9997 3.3570 12 6 -0.6776 1.7670 4.0475 13 7 -1.0681 0.9275 4.9815 14 14 -1.9054 2.4060 2.7932 15 1 -1.9306 1.4983 1.6182 16 1 -3.2568 2.4596 3.4063 17 1 -1.5050 3.7680 2.3579 18 6 3.0988 2.0440 4.8125 19 6 2.2191 2.2073 6.0536 20 6 3.5269 -0.6708 3.6963 21 6 4.0329 -1.3948 2.4464 22 7 3.5096 -0.7219 1.2494 23 6 4.0358 -1.3417 0.0260 24 1 -0.3633 -1.0228 0.0998 25 1 -0.3633 0.5978 0.8358 26 1 -0.3632 0.4250 -0.9357 27 1 1.8934 -0.5138 -0.8899 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6766 1.9565 0.8899 31 1 0.4443 -0.0198 2.5164 32 1 1.8764 1.0376 2.4837 33 1 2.0905 -0.4143 5.7820 34 1 0.4789 -0.3044 5.0345 35 1 -2.0066 0.6964 5.0643 36 1 3.2788 2.9296 4.2032 37 1 3.9270 1.3378 4.8717 38 1 2.4685 1.6086 6.9297 39 1 1.8203 3.2004 6.2607 40 1 3.8919 0.3562 3.6944 41 1 3.8903 -1.1842 4.5865 42 1 5.1227 -1.3721 2.4292 43 1 3.6909 -2.4296 2.4621 44 1 3.6983 -2.3766 -0.0312 45 1 3.6743 -0.7931 -0.8437 46 1 5.1253 -1.3154 0.0450 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602832160.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:30 Heat of formation + Delta-G solvation = 44.273787 kcal Electronic energy + Delta-G solvation = -23101.771953 eV Core-core repulsion = 20220.539885 eV Total energy + Delta-G solvation = -2881.232068 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.47018 -37.09525 -34.61209 -33.50728 -32.24263 -29.19351 -28.09043 -26.66655 -25.78764 -24.71241 -23.46187 -22.17498 -21.32765 -19.98750 -19.01483 -18.11166 -16.29105 -15.43185 -15.03170 -14.84502 -14.55921 -14.25825 -13.99761 -13.67867 -13.28588 -13.05816 -12.71147 -12.42521 -12.21000 -12.06656 -11.82339 -11.50196 -11.32653 -11.24547 -10.97698 -10.83453 -10.69069 -10.52763 -10.40864 -10.31210 -10.10151 -9.97089 -9.86828 -9.55229 -9.40816 -8.88350 -8.75328 -8.01413 -7.90583 -7.05492 -6.04708 -4.05027 3.22782 3.32290 3.34904 4.30805 4.33880 4.87316 5.07720 5.22590 5.37270 5.40269 5.53771 5.60145 5.64656 5.76875 5.80448 5.92298 5.94590 6.05859 6.09707 6.12433 6.15379 6.22056 6.32354 6.40054 6.46249 6.46713 6.52946 6.57274 6.68558 6.70865 6.77927 6.78914 6.91448 6.97421 7.03117 7.28948 7.38720 7.40571 7.50001 7.57716 7.65726 8.01969 8.23461 8.26571 8.51566 8.86715 9.49096 10.95482 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.016232 B = 0.010529 C = 0.007498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.603257 B = 2658.594922 C = 3733.491807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.084 4.084 3 C -0.142 4.142 4 C 0.086 3.914 5 H 0.035 0.965 6 C 0.074 3.926 7 N -0.534 5.534 8 C 0.077 3.923 9 C 0.030 3.970 10 C -0.478 4.478 11 H 0.058 0.942 12 C 0.073 3.927 13 N -0.875 5.875 14 Si 0.875 3.125 15 H -0.266 1.266 16 H -0.288 1.288 17 H -0.274 1.274 18 C -0.216 4.216 19 C -0.202 4.202 20 C 0.036 3.964 21 C 0.062 3.938 22 N -0.533 5.533 23 C 0.023 3.977 24 H 0.049 0.951 25 H 0.072 0.928 26 H 0.048 0.952 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.038 0.962 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.031 0.969 34 H 0.132 0.868 35 H 0.263 0.737 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.066 0.934 43 H 0.031 0.969 44 H 0.017 0.983 45 H 0.068 0.932 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.239 -3.957 -7.493 10.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.103 4.103 3 C -0.199 4.199 4 C -0.023 4.023 5 H 0.053 0.947 6 C -0.053 4.053 7 N -0.257 5.257 8 C -0.050 4.050 9 C 0.029 3.971 10 C -0.516 4.516 11 H 0.076 0.924 12 C -0.129 4.129 13 N -0.512 5.512 14 Si 0.702 3.298 15 H -0.192 1.192 16 H -0.214 1.214 17 H -0.199 1.199 18 C -0.253 4.253 19 C -0.241 4.241 20 C -0.093 4.093 21 C -0.066 4.066 22 N -0.257 5.257 23 C -0.126 4.126 24 H 0.068 0.932 25 H 0.091 0.909 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.057 0.943 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.049 0.951 34 H 0.149 0.851 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.049 0.951 44 H 0.036 0.964 45 H 0.087 0.913 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.064 -4.125 -7.456 10.459 hybrid contribution -0.544 0.362 -0.496 0.820 sum 5.520 -3.763 -7.952 10.386 Atomic orbital electron populations 1.22020 0.95248 1.01799 1.02219 1.21090 0.95399 0.97172 0.96630 1.21809 1.01486 0.95218 1.01435 1.21933 0.86032 0.97785 0.96526 0.94734 1.22341 0.99789 0.97351 0.85856 1.62633 1.05112 1.54086 1.03840 1.22150 1.03959 0.90884 0.88029 1.19671 0.89513 0.92998 0.94951 1.20461 0.91454 1.15509 1.24145 0.92407 1.24872 0.97998 0.94715 0.95321 1.69696 1.15919 1.34221 1.31403 0.86912 0.80753 0.79688 0.82421 1.19190 1.21376 1.19891 1.23076 0.96106 1.02900 1.03248 1.22915 1.07016 1.02237 0.91940 1.22484 0.91050 1.00207 0.95510 1.22128 0.98302 0.95786 0.90433 1.62151 1.08440 1.53586 1.01541 1.22385 0.99789 0.96641 0.93780 0.93211 0.90941 0.93331 0.92214 0.92040 0.94279 0.91303 0.90145 0.90545 0.95083 0.85103 0.92681 0.91089 0.90695 0.91995 0.90793 0.92197 0.92128 0.91563 0.95090 0.96398 0.91314 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 8.68 37.16 0.32 -2.22 16 2 C -0.08 -1.33 2.28 -90.62 -0.21 -1.54 16 3 C -0.14 -2.30 8.68 37.16 0.32 -1.98 16 4 C 0.09 1.51 1.78 -67.66 -0.12 1.39 16 5 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 6 C 0.07 1.54 2.75 -3.77 -0.01 1.53 16 7 N -0.53 -11.21 4.92 -234.47 -1.15 -12.36 16 8 C 0.08 1.78 5.39 -3.82 -0.02 1.76 16 9 C 0.03 0.72 1.06 -155.66 -0.17 0.56 16 10 C -0.48 -12.20 6.25 -34.44 -0.22 -12.42 16 11 H 0.06 1.52 7.84 -52.49 -0.41 1.11 16 12 C 0.07 1.87 4.20 -17.82 -0.07 1.80 16 13 N -0.87 -23.22 10.78 55.43 0.60 -22.62 16 14 Si 0.87 19.87 29.10 -169.99 -4.95 14.92 16 15 H -0.27 -5.76 5.69 56.52 0.32 -5.44 16 16 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 18 C -0.22 -4.67 8.46 -26.73 -0.23 -4.90 16 19 C -0.20 -4.62 9.88 -26.73 -0.26 -4.88 16 20 C 0.04 0.66 4.90 -3.77 -0.02 0.64 16 21 C 0.06 0.99 5.62 -3.77 -0.02 0.97 16 22 N -0.53 -8.61 4.02 -234.73 -0.94 -9.56 16 23 C 0.02 0.30 9.15 60.06 0.55 0.85 16 24 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.07 1.39 4.81 -51.93 -0.25 1.14 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.85 6.34 -51.93 -0.33 0.52 16 28 H 0.06 0.98 7.61 -51.93 -0.39 0.58 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 1.29 6.39 -51.93 -0.33 0.95 16 31 H 0.08 1.87 5.52 -51.93 -0.29 1.58 16 32 H 0.08 1.73 3.99 -51.93 -0.21 1.52 16 33 H 0.03 0.70 7.73 -51.93 -0.40 0.30 16 34 H 0.13 3.42 5.24 -51.93 -0.27 3.15 16 35 H 0.26 6.74 8.32 -40.82 -0.34 6.40 16 36 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 37 H 0.07 1.51 5.66 -51.93 -0.29 1.22 16 38 H 0.06 1.34 8.09 -51.93 -0.42 0.92 16 39 H 0.07 1.73 8.14 -51.93 -0.42 1.30 16 40 H 0.06 1.17 4.52 -51.93 -0.23 0.94 16 41 H 0.06 1.06 8.02 -51.93 -0.42 0.64 16 42 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 43 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 45 H 0.07 0.86 6.20 -51.93 -0.32 0.54 16 46 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 325.47 15.07 4.90 4.90 Total: -1.00 -25.40 325.47 -9.70 -35.11 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -8.01 Total: 8.04 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: -0.15 Total: -18.44 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: -1.50 Total: -44.54 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -4.95 Total: 14.92 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -25.40 -9.70 -35.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602832160.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.380 kcal (2) G-P(sol) polarization free energy of solvation -25.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds