Wall clock time and date at job start Mon Mar 30 2020 01:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46956 * 2 1 4 4 C 1.53002 * 109.47309 * 119.99455 * 2 1 3 5 5 H 1.09006 * 109.48623 * 59.87486 * 4 2 1 6 6 C 1.53053 * 109.48919 * 299.81372 * 4 2 1 7 7 N 1.46955 * 109.36383 * 181.62933 * 6 4 2 8 8 C 1.46903 * 111.00117 * 183.18695 * 7 6 4 9 9 C 1.52999 * 109.46730 * 312.07908 * 8 7 6 10 10 C 1.50697 * 115.56469 * 79.24950 * 9 8 7 11 11 H 1.07996 * 120.00182 * 219.29198 * 10 9 8 12 12 C 1.37884 * 120.00085 * 39.29265 * 10 9 8 13 13 N 1.31507 * 119.99684 * 11.70231 * 12 10 9 14 14 Si 1.86798 * 119.99898 * 191.70427 * 12 10 9 15 15 H 1.48500 * 109.47305 * 89.99822 * 14 12 10 16 16 H 1.48494 * 109.46943 * 209.99815 * 14 12 10 17 17 H 1.48494 * 109.47433 * 329.99992 * 14 12 10 18 18 C 1.52999 * 117.49909 * 293.55332 * 9 8 7 19 19 C 1.53000 * 60.00321 * 252.51547 * 18 9 8 20 20 C 1.46953 * 110.88014 * 59.31864 * 7 6 4 21 21 C 1.53049 * 109.36446 * 300.67688 * 20 7 6 22 22 N 1.46953 * 109.49008 * 179.97438 * 4 2 1 23 23 C 1.46894 * 111.00114 * 303.15438 * 22 4 2 24 24 H 1.09001 * 109.46750 * 185.57027 * 1 2 3 25 25 H 1.08994 * 109.47060 * 305.57137 * 1 2 3 26 26 H 1.08996 * 109.46638 * 65.57219 * 1 2 3 27 27 H 1.08993 * 109.47240 * 239.99766 * 2 1 3 28 28 H 1.09004 * 109.47492 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.46793 * 299.99620 * 3 2 1 30 30 H 1.09001 * 109.47557 * 59.99580 * 3 2 1 31 31 H 1.09003 * 109.48965 * 61.65841 * 6 4 2 32 32 H 1.09000 * 109.48520 * 301.59592 * 6 4 2 33 33 H 1.08997 * 109.47549 * 192.07665 * 8 7 6 34 34 H 1.09003 * 109.46961 * 72.07107 * 8 7 6 35 35 H 0.97005 * 119.99722 * 174.99636 * 13 12 10 36 36 H 1.08996 * 117.49965 * 145.02449 * 18 9 8 37 37 H 1.09001 * 117.49562 * 0.02562 * 18 9 8 38 38 H 1.09000 * 117.50211 * 107.49020 * 19 18 9 39 39 H 1.09005 * 117.49721 * 252.51469 * 19 18 9 40 40 H 1.08993 * 109.49103 * 60.64895 * 20 7 6 41 41 H 1.09006 * 109.49047 * 180.68978 * 20 7 6 42 42 H 1.09009 * 109.48859 * 178.36763 * 21 20 7 43 43 H 1.09000 * 109.49238 * 298.41440 * 21 20 7 44 44 H 1.09000 * 109.47465 * 299.14103 * 23 22 4 45 45 H 1.09003 * 109.46782 * 59.14524 * 23 22 4 46 46 H 1.09001 * 109.47209 * 179.13889 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7211 1.2493 5 1 1.6751 -1.7483 1.2508 6 6 1.5340 0.0029 2.4992 7 7 2.0574 -0.6689 3.6969 8 6 1.5322 -0.0483 4.9204 9 6 1.6800 1.4716 4.8251 10 6 0.6383 2.1754 3.9942 11 1 0.9224 2.9997 3.3570 12 6 -0.6776 1.7670 4.0475 13 7 -1.0681 0.9275 4.9815 14 14 -1.9054 2.4060 2.7932 15 1 -1.9306 1.4983 1.6182 16 1 -3.2568 2.4596 3.4063 17 1 -1.5050 3.7680 2.3579 18 6 3.0988 2.0440 4.8125 19 6 2.2191 2.2073 6.0536 20 6 3.5269 -0.6708 3.6963 21 6 4.0329 -1.3948 2.4464 22 7 3.5096 -0.7219 1.2494 23 6 4.0358 -1.3417 0.0260 24 1 -0.3633 -1.0228 0.0998 25 1 -0.3633 0.5978 0.8358 26 1 -0.3632 0.4250 -0.9357 27 1 1.8934 -0.5138 -0.8899 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6766 1.9565 0.8899 31 1 0.4443 -0.0198 2.5164 32 1 1.8764 1.0376 2.4837 33 1 2.0905 -0.4143 5.7820 34 1 0.4789 -0.3044 5.0345 35 1 -2.0066 0.6964 5.0643 36 1 3.2788 2.9296 4.2032 37 1 3.9270 1.3378 4.8717 38 1 2.4685 1.6086 6.9297 39 1 1.8203 3.2004 6.2607 40 1 3.8919 0.3562 3.6944 41 1 3.8903 -1.1842 4.5865 42 1 5.1227 -1.3721 2.4292 43 1 3.6909 -2.4296 2.4621 44 1 3.6983 -2.3766 -0.0312 45 1 3.6743 -0.7931 -0.8437 46 1 5.1253 -1.3154 0.0450 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602832160.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:30 Heat of formation + Delta-G solvation = 29.367067 kcal Electronic energy + Delta-G solvation = -23102.418357 eV Core-core repulsion = 20220.539885 eV Total energy + Delta-G solvation = -2881.878471 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.96258 -38.73757 -36.02496 -35.01397 -34.20511 -30.61535 -29.54983 -27.97277 -27.72465 -26.19433 -24.91227 -23.60727 -23.12479 -21.44010 -20.86801 -19.52102 -18.18461 -16.96507 -16.56038 -16.39047 -16.12246 -15.65271 -15.59417 -15.23521 -14.85013 -14.63914 -14.09390 -13.95759 -13.63514 -13.50560 -13.34614 -12.94105 -12.86401 -12.72650 -12.68573 -12.46754 -12.32000 -12.10179 -11.93785 -11.81475 -11.74173 -11.64742 -11.36135 -11.24626 -10.91616 -10.73953 -10.62926 -9.90418 -9.17044 -8.74532 -8.02519 -6.06997 1.38991 1.43470 1.49053 2.42788 3.01883 3.06393 3.40065 3.68872 3.91942 4.05178 4.17901 4.27941 4.34146 4.41649 4.46321 4.52984 4.61465 4.65309 4.71557 4.75672 4.81636 4.85115 4.85704 4.87197 4.92992 4.98959 5.06287 5.09934 5.13954 5.17132 5.21265 5.28528 5.31369 5.46536 5.52308 5.55152 5.57857 5.67235 5.77289 6.11192 6.22776 6.25358 6.41712 6.53301 6.71039 6.87941 7.48726 8.96299 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.016232 B = 0.010529 C = 0.007498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.603257 B = 2658.594922 C = 3733.491807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.079 4.079 3 C -0.135 4.135 4 C 0.093 3.907 5 H 0.024 0.976 6 C 0.089 3.911 7 N -0.540 5.540 8 C 0.085 3.915 9 C 0.012 3.988 10 C -0.483 4.483 11 H 0.042 0.958 12 C 0.042 3.958 13 N -0.897 5.897 14 Si 0.917 3.083 15 H -0.252 1.252 16 H -0.291 1.291 17 H -0.276 1.276 18 C -0.192 4.192 19 C -0.208 4.208 20 C 0.036 3.964 21 C 0.066 3.934 22 N -0.541 5.541 23 C 0.023 3.977 24 H 0.052 0.948 25 H 0.039 0.961 26 H 0.069 0.931 27 H 0.087 0.913 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.035 0.965 31 H 0.047 0.953 32 H 0.056 0.944 33 H 0.033 0.967 34 H 0.101 0.899 35 H 0.261 0.739 36 H 0.067 0.933 37 H 0.094 0.906 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.050 0.950 41 H 0.070 0.930 42 H 0.094 0.906 43 H 0.030 0.970 44 H 0.022 0.978 45 H 0.077 0.923 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.851 -4.674 -9.380 13.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.098 4.098 3 C -0.192 4.192 4 C -0.016 4.016 5 H 0.042 0.958 6 C -0.039 4.039 7 N -0.263 5.263 8 C -0.042 4.042 9 C 0.010 3.990 10 C -0.520 4.520 11 H 0.061 0.939 12 C -0.158 4.158 13 N -0.536 5.536 14 Si 0.744 3.256 15 H -0.177 1.177 16 H -0.217 1.217 17 H -0.201 1.201 18 C -0.229 4.229 19 C -0.246 4.246 20 C -0.093 4.093 21 C -0.062 4.062 22 N -0.266 5.266 23 C -0.124 4.124 24 H 0.071 0.929 25 H 0.058 0.942 26 H 0.088 0.912 27 H 0.106 0.894 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.051 0.949 34 H 0.119 0.881 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.112 0.888 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.088 0.912 42 H 0.112 0.888 43 H 0.048 0.952 44 H 0.041 0.959 45 H 0.096 0.904 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.693 -4.845 -9.357 13.046 hybrid contribution -1.004 0.590 0.109 1.170 sum 6.688 -4.254 -9.249 12.181 Atomic orbital electron populations 1.21998 0.95806 1.01540 1.01862 1.21093 0.94914 0.97038 0.96756 1.21720 1.01606 0.95201 1.00681 1.21766 0.87385 0.96794 0.95629 0.95772 1.22046 0.97829 0.96729 0.87289 1.62599 1.07047 1.53625 1.03070 1.21873 1.02394 0.90677 0.89286 1.19695 0.90520 0.93300 0.95504 1.20499 0.92234 1.15224 1.24089 0.93947 1.25326 0.99209 0.94937 0.96339 1.69823 1.15915 1.35233 1.32614 0.86244 0.78751 0.79301 0.81335 1.17651 1.21710 1.20124 1.23023 0.95532 1.02610 1.01727 1.22921 1.07484 1.01702 0.92535 1.22541 0.89012 1.00126 0.97578 1.22119 0.99772 0.95082 0.89207 1.62138 1.07135 1.54454 1.02899 1.22460 1.00907 0.96730 0.92344 0.92869 0.94216 0.91238 0.89446 0.91647 0.92417 0.94612 0.93452 0.92606 0.94854 0.88111 0.92947 0.91471 0.88770 0.90883 0.91887 0.93250 0.91178 0.88751 0.95223 0.95933 0.90417 0.90229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.87 8.68 71.98 0.62 -4.24 16 2 C -0.08 -2.35 2.28 -10.79 -0.02 -2.37 16 3 C -0.13 -4.13 8.68 71.98 0.62 -3.51 16 4 C 0.09 3.16 1.78 44.92 0.08 3.24 16 5 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 6 C 0.09 3.73 2.75 86.31 0.24 3.97 16 7 N -0.54 -22.69 4.92 -895.72 -4.40 -27.10 16 8 C 0.09 4.03 5.39 86.30 0.46 4.50 16 9 C 0.01 0.56 1.06 -52.93 -0.06 0.50 16 10 C -0.48 -25.35 6.25 25.60 0.16 -25.19 16 11 H 0.04 2.30 7.84 -2.91 -0.02 2.28 16 12 C 0.04 2.21 4.20 84.66 0.36 2.57 16 13 N -0.90 -49.15 10.78 21.45 0.23 -48.92 16 14 Si 0.92 41.69 29.10 68.60 2.00 43.68 16 15 H -0.25 -10.77 5.69 99.48 0.57 -10.20 16 16 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 17 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 18 C -0.19 -8.20 8.46 30.59 0.26 -7.94 16 19 C -0.21 -9.50 9.88 30.60 0.30 -9.20 16 20 C 0.04 1.25 4.90 86.31 0.42 1.68 16 21 C 0.07 1.94 5.62 86.31 0.48 2.43 16 22 N -0.54 -16.07 4.02 -896.54 -3.60 -19.67 16 23 C 0.02 0.52 9.15 127.69 1.17 1.69 16 24 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.04 1.51 4.81 -2.39 -0.01 1.50 16 26 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.09 2.16 6.34 -2.39 -0.02 2.15 16 28 H 0.06 1.93 7.61 -2.38 -0.02 1.91 16 29 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.03 1.33 6.39 -2.39 -0.02 1.31 16 31 H 0.05 2.27 5.52 -2.39 -0.01 2.26 16 32 H 0.06 2.57 3.99 -2.39 -0.01 2.56 16 33 H 0.03 1.51 7.73 -2.39 -0.02 1.49 16 34 H 0.10 5.45 5.24 -2.39 -0.01 5.43 16 35 H 0.26 13.80 8.32 -92.70 -0.77 13.03 16 36 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 37 H 0.09 3.65 5.66 -2.39 -0.01 3.64 16 38 H 0.07 3.14 8.09 -2.39 -0.02 3.12 16 39 H 0.06 2.98 8.14 -2.38 -0.02 2.96 16 40 H 0.05 1.85 4.52 -2.39 -0.01 1.84 16 41 H 0.07 2.31 8.02 -2.38 -0.02 2.29 16 42 H 0.09 2.27 8.14 -2.38 -0.02 2.25 16 43 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.02 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.08 1.61 6.20 -2.39 -0.01 1.59 16 46 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -55.53 325.47 0.12 -55.41 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: 0.80 Total: 28.49 kcal Atomic # 6 Polarization: -37.00 SS G_CDS: 5.10 Total: -31.89 kcal Atomic # 7 Polarization: -87.91 SS G_CDS: -7.78 Total: -95.69 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.00 Total: 43.68 kcal Total: -55.53 0.12 -55.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602832160.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.775 kcal (2) G-P(sol) polarization free energy of solvation -55.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds