Wall clock time and date at job start Mon Mar 30 2020 00:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46500 * 120.00353 * 2 1 4 4 C 1.34779 * 120.00005 * 180.02562 * 2 1 3 5 5 O 1.21288 * 119.99816 * 359.97438 * 4 2 1 6 6 C 1.50700 * 120.00092 * 180.27489 * 4 2 1 7 7 H 1.08997 * 110.27374 * 57.63417 * 6 4 2 8 8 C 1.54595 * 110.30595 * 295.43714 * 6 4 2 9 9 C 1.54937 * 102.92259 * 219.12710 * 8 6 4 10 10 N 1.48533 * 103.22798 * 37.41782 * 9 8 6 11 11 C 1.46899 * 111.00078 * 200.28046 * 10 9 8 12 12 C 1.52999 * 109.47048 * 281.76700 * 11 10 9 13 13 C 1.50703 * 115.55046 * 306.41162 * 12 11 10 14 14 H 1.07998 * 119.99620 * 144.72182 * 13 12 11 15 15 C 1.37872 * 119.99723 * 324.72220 * 13 12 11 16 16 N 1.31510 * 120.00517 * 350.10924 * 15 13 12 17 17 Si 1.86805 * 119.99703 * 170.11784 * 15 13 12 18 18 H 1.48505 * 109.46988 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47261 * 119.99561 * 17 15 13 20 20 H 1.48503 * 109.46892 * 239.99821 * 17 15 13 21 21 C 1.53003 * 117.49735 * 160.74067 * 12 11 10 22 22 C 1.53004 * 117.49486 * 92.08093 * 12 11 10 23 23 C 1.47911 * 105.81952 * 320.79470 * 10 9 8 24 24 H 1.09003 * 109.47091 * 240.00264 * 1 2 3 25 25 H 1.09009 * 109.47056 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47375 * 119.99665 * 1 2 3 27 27 H 1.09002 * 109.47431 * 270.00516 * 3 2 1 28 28 H 1.08997 * 109.47081 * 30.00167 * 3 2 1 29 29 H 1.08995 * 109.47404 * 150.00251 * 3 2 1 30 30 H 1.08995 * 110.72648 * 337.48558 * 8 6 4 31 31 H 1.09001 * 110.72126 * 100.77268 * 8 6 4 32 32 H 1.09001 * 110.66685 * 278.98584 * 9 8 6 33 33 H 1.08995 * 110.67113 * 155.85317 * 9 8 6 34 34 H 1.08996 * 109.47357 * 41.77261 * 11 10 9 35 35 H 1.09002 * 109.46947 * 161.77097 * 11 10 9 36 36 H 0.97001 * 120.00085 * 185.01234 * 16 15 13 37 37 H 1.09004 * 117.49491 * 359.97438 * 21 12 11 38 38 H 1.08989 * 117.50033 * 145.02379 * 21 12 11 39 39 H 1.09000 * 117.49513 * 214.98027 * 22 12 11 40 40 H 1.08999 * 117.49716 * 359.97438 * 22 12 11 41 41 H 1.09001 * 109.91304 * 265.97593 * 23 10 9 42 42 H 1.08996 * 110.08262 * 144.77523 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 -0.0005 5 8 1.5324 -2.2176 -0.0005 6 6 3.6458 -1.1673 0.0057 7 1 4.0199 -0.6224 0.8725 8 6 4.1878 -0.5408 -1.2996 9 6 5.4081 -1.4355 -1.6327 10 7 4.9522 -2.7928 -1.2378 11 6 6.0952 -3.6906 -1.0243 12 6 6.6316 -4.1638 -2.3768 13 6 5.6143 -4.7872 -3.2975 14 1 5.6871 -4.6357 -4.3643 15 6 4.5908 -5.5508 -2.7777 16 7 4.6078 -5.8978 -1.5093 17 14 3.1797 -6.0928 -3.8754 18 1 3.3952 -5.5750 -5.2504 19 1 3.1198 -7.5762 -3.9083 20 1 1.9022 -5.5575 -3.3398 21 6 8.0556 -4.7219 -2.4159 22 6 7.7557 -3.3460 -3.0161 23 6 4.1802 -2.6115 0.0108 24 1 -0.3633 -0.5138 0.8900 25 1 -0.3634 1.0277 0.0005 26 1 -0.3634 -0.5138 -0.8900 27 1 2.3792 1.5834 -1.0277 28 1 1.6085 2.0283 0.5138 29 1 3.1499 1.1383 0.5138 30 1 3.4417 -0.5953 -2.0923 31 1 4.4996 0.4901 -1.1321 32 1 6.2765 -1.1356 -1.0462 33 1 5.6316 -1.3998 -2.6989 34 1 6.8805 -3.1579 -0.4881 35 1 5.7757 -4.5526 -0.4385 36 1 3.9273 -6.4946 -1.1606 37 1 8.6104 -4.7516 -1.4781 38 1 8.2568 -5.5397 -3.1077 39 1 7.7596 -3.2593 -4.1027 40 1 8.1127 -2.4708 -2.4733 41 1 4.8284 -2.7646 0.8736 42 1 3.3484 -3.3152 0.0420 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602841307.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:22:39 Heat of formation + Delta-G solvation = 11.205963 kcal Electronic energy + Delta-G solvation = -21530.628313 eV Core-core repulsion = 18512.129222 eV Total energy + Delta-G solvation = -3018.499091 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.08013 -37.81677 -35.88195 -35.46799 -31.91005 -31.29799 -28.60539 -27.96067 -26.25815 -25.41932 -24.41631 -21.46680 -20.88709 -20.58021 -18.82047 -18.70466 -17.14694 -16.18702 -15.88690 -15.57006 -14.70047 -14.50672 -14.31626 -13.60186 -13.37618 -13.23615 -13.01163 -12.78602 -12.74163 -12.33601 -12.11495 -11.94455 -11.51147 -11.18522 -11.09752 -10.90680 -10.80584 -10.76596 -10.37587 -10.33855 -10.29048 -9.81289 -9.45917 -9.15752 -8.84745 -8.66649 -8.52516 -7.84923 -7.15191 -5.76970 -3.78038 2.85967 3.05897 3.45810 3.56818 3.57986 4.60677 4.61949 4.82503 4.93641 4.97517 5.12270 5.19535 5.22270 5.38065 5.45771 5.54333 5.59379 5.72302 5.76419 5.77920 5.90510 6.05582 6.18322 6.26000 6.39881 6.44502 6.50350 6.60426 6.66248 6.76393 6.82477 6.98667 7.04267 7.25536 7.39445 7.43358 7.65283 8.06699 8.20734 8.31144 8.38143 8.68364 9.15066 9.82183 11.26141 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019183 B = 0.006884 C = 0.005629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.284502 B = 4066.397193 C = 4972.651593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.629 5.629 3 C 0.081 3.919 4 C 0.522 3.478 5 O -0.521 6.521 6 C -0.119 4.119 7 H 0.091 0.909 8 C -0.109 4.109 9 C 0.038 3.962 10 N -0.468 5.468 11 C 0.095 3.905 12 C 0.071 3.929 13 C -0.474 4.474 14 H 0.053 0.947 15 C 0.091 3.909 16 N -0.875 5.875 17 Si 0.887 3.113 18 H -0.277 1.277 19 H -0.290 1.290 20 H -0.282 1.282 21 C -0.209 4.209 22 C -0.217 4.217 23 C 0.053 3.947 24 H 0.057 0.943 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.029 0.971 33 H 0.083 0.917 34 H -0.011 1.011 35 H 0.115 0.885 36 H 0.257 0.743 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.061 0.939 41 H 0.033 0.967 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.308 15.175 5.198 16.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.365 5.365 3 C -0.063 4.063 4 C 0.310 3.690 5 O -0.396 6.396 6 C -0.141 4.141 7 H 0.110 0.890 8 C -0.148 4.148 9 C -0.090 4.090 10 N -0.191 5.191 11 C -0.032 4.032 12 C 0.070 3.930 13 C -0.511 4.511 14 H 0.071 0.929 15 C -0.112 4.112 16 N -0.513 5.513 17 Si 0.716 3.284 18 H -0.202 1.202 19 H -0.217 1.217 20 H -0.208 1.208 21 C -0.248 4.248 22 C -0.255 4.255 23 C -0.076 4.076 24 H 0.076 0.924 25 H 0.089 0.911 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.048 0.952 33 H 0.101 0.899 34 H 0.007 0.993 35 H 0.133 0.867 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.051 0.949 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.123 14.294 4.953 15.680 hybrid contribution -0.117 0.264 0.084 0.301 sum -4.240 14.558 5.037 15.978 Atomic orbital electron populations 1.21559 0.79566 1.01681 1.02320 1.47763 1.06766 1.06481 1.75500 1.21860 0.97345 0.85140 1.01911 1.20637 0.90308 0.82791 0.75245 1.90714 1.70012 1.30841 1.48023 1.22191 0.91439 1.00450 1.00034 0.89050 1.22521 0.98752 0.97993 0.95503 1.23257 0.94092 0.90040 1.01632 1.64633 1.21745 1.06181 1.26573 1.21921 0.88138 0.96000 0.97191 1.18905 0.85928 0.94668 0.93467 1.20270 1.08495 1.30721 0.91620 0.92909 1.24702 0.96754 0.95242 0.94517 1.69752 1.34585 1.33748 1.13183 0.86633 0.83537 0.77443 0.80766 1.20163 1.21655 1.20764 1.22971 1.05875 0.95570 1.00368 1.22913 1.10567 0.93325 0.98673 1.22821 0.99130 0.93260 0.92353 0.92394 0.91085 0.92225 0.92485 0.91454 0.90863 0.90755 0.91315 0.95248 0.89887 0.99336 0.86705 0.93310 0.92146 0.90544 0.91011 0.92058 0.94884 0.88239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.00 10.16 59.84 0.61 1.61 16 2 N -0.63 -7.97 3.27 -189.51 -0.62 -8.59 16 3 C 0.08 0.68 9.05 59.85 0.54 1.22 16 4 C 0.52 8.82 6.92 -10.98 -0.08 8.74 16 5 O -0.52 -11.28 15.24 5.55 0.08 -11.19 16 6 C -0.12 -1.87 2.46 -90.41 -0.22 -2.09 16 7 H 0.09 1.16 7.31 -51.93 -0.38 0.78 16 8 C -0.11 -1.61 5.34 -24.87 -0.13 -1.74 16 9 C 0.04 0.69 6.05 -1.90 -0.01 0.68 16 10 N -0.47 -10.43 4.75 -230.45 -1.10 -11.52 16 11 C 0.09 2.27 3.81 -3.83 -0.01 2.25 16 12 C 0.07 1.79 1.84 -155.66 -0.29 1.50 16 13 C -0.47 -13.26 8.72 -34.44 -0.30 -13.57 16 14 H 0.05 1.50 7.83 -52.49 -0.41 1.09 16 15 C 0.09 2.57 5.15 -17.82 -0.09 2.48 16 16 N -0.88 -24.97 10.74 55.43 0.60 -24.38 16 17 Si 0.89 22.61 29.55 -169.99 -5.02 17.59 16 18 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 20 H -0.28 -7.41 7.11 56.52 0.40 -7.01 16 21 C -0.21 -4.87 9.96 -26.69 -0.27 -5.14 16 22 C -0.22 -4.81 9.64 -26.69 -0.26 -5.07 16 23 C 0.05 1.07 6.22 -2.75 -0.02 1.05 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.07 0.53 7.80 -51.92 -0.40 0.12 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.45 8.02 -51.93 -0.42 0.03 16 28 H 0.07 0.41 7.92 -51.93 -0.41 0.00 16 29 H 0.07 0.57 5.98 -51.93 -0.31 0.26 16 30 H 0.07 1.19 7.86 -51.93 -0.41 0.79 16 31 H 0.07 0.75 7.42 -51.93 -0.39 0.37 16 32 H 0.03 0.50 7.73 -51.93 -0.40 0.10 16 33 H 0.08 1.60 8.13 -51.93 -0.42 1.17 16 34 H -0.01 -0.25 7.64 -51.93 -0.40 -0.65 16 35 H 0.12 3.06 5.90 -51.93 -0.31 2.75 16 36 H 0.26 7.16 8.32 -40.82 -0.34 6.82 16 37 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.08 1.80 8.14 -51.94 -0.42 1.38 16 39 H 0.07 1.58 8.14 -51.93 -0.42 1.15 16 40 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.03 0.63 7.77 -51.93 -0.40 0.23 16 42 H 0.10 2.38 6.42 -51.93 -0.33 2.04 16 LS Contribution 331.11 15.07 4.99 4.99 Total: -1.00 -32.28 331.11 -8.66 -40.94 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -7.06 Total: 0.24 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: -0.53 Total: -8.08 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: -1.12 Total: -44.49 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.08 Total: -11.19 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.28 -8.66 -40.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602841307.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.150 kcal (2) G-P(sol) polarization free energy of solvation -32.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds