Wall clock time and date at job start Mon Mar 30 2020 00:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46500 * 120.00353 * 2 1 4 4 C 1.34779 * 120.00005 * 180.02562 * 2 1 3 5 5 O 1.21288 * 119.99816 * 359.97438 * 4 2 1 6 6 C 1.50700 * 120.00092 * 180.27489 * 4 2 1 7 7 H 1.08997 * 110.27374 * 57.63417 * 6 4 2 8 8 C 1.54595 * 110.30595 * 295.43714 * 6 4 2 9 9 C 1.54937 * 102.92259 * 219.12710 * 8 6 4 10 10 N 1.48533 * 103.22798 * 37.41782 * 9 8 6 11 11 C 1.46899 * 111.00078 * 200.28046 * 10 9 8 12 12 C 1.52999 * 109.47048 * 281.76700 * 11 10 9 13 13 C 1.50703 * 115.55046 * 306.41162 * 12 11 10 14 14 H 1.07998 * 119.99620 * 144.72182 * 13 12 11 15 15 C 1.37872 * 119.99723 * 324.72220 * 13 12 11 16 16 N 1.31510 * 120.00517 * 350.10924 * 15 13 12 17 17 Si 1.86805 * 119.99703 * 170.11784 * 15 13 12 18 18 H 1.48505 * 109.46988 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47261 * 119.99561 * 17 15 13 20 20 H 1.48503 * 109.46892 * 239.99821 * 17 15 13 21 21 C 1.53003 * 117.49735 * 160.74067 * 12 11 10 22 22 C 1.53004 * 117.49486 * 92.08093 * 12 11 10 23 23 C 1.47911 * 105.81952 * 320.79470 * 10 9 8 24 24 H 1.09003 * 109.47091 * 240.00264 * 1 2 3 25 25 H 1.09009 * 109.47056 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47375 * 119.99665 * 1 2 3 27 27 H 1.09002 * 109.47431 * 270.00516 * 3 2 1 28 28 H 1.08997 * 109.47081 * 30.00167 * 3 2 1 29 29 H 1.08995 * 109.47404 * 150.00251 * 3 2 1 30 30 H 1.08995 * 110.72648 * 337.48558 * 8 6 4 31 31 H 1.09001 * 110.72126 * 100.77268 * 8 6 4 32 32 H 1.09001 * 110.66685 * 278.98584 * 9 8 6 33 33 H 1.08995 * 110.67113 * 155.85317 * 9 8 6 34 34 H 1.08996 * 109.47357 * 41.77261 * 11 10 9 35 35 H 1.09002 * 109.46947 * 161.77097 * 11 10 9 36 36 H 0.97001 * 120.00085 * 185.01234 * 16 15 13 37 37 H 1.09004 * 117.49491 * 359.97438 * 21 12 11 38 38 H 1.08989 * 117.50033 * 145.02379 * 21 12 11 39 39 H 1.09000 * 117.49513 * 214.98027 * 22 12 11 40 40 H 1.08999 * 117.49716 * 359.97438 * 22 12 11 41 41 H 1.09001 * 109.91304 * 265.97593 * 23 10 9 42 42 H 1.08996 * 110.08262 * 144.77523 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 -0.0005 5 8 1.5324 -2.2176 -0.0005 6 6 3.6458 -1.1673 0.0057 7 1 4.0199 -0.6224 0.8725 8 6 4.1878 -0.5408 -1.2996 9 6 5.4081 -1.4355 -1.6327 10 7 4.9522 -2.7928 -1.2378 11 6 6.0952 -3.6906 -1.0243 12 6 6.6316 -4.1638 -2.3768 13 6 5.6143 -4.7872 -3.2975 14 1 5.6871 -4.6357 -4.3643 15 6 4.5908 -5.5508 -2.7777 16 7 4.6078 -5.8978 -1.5093 17 14 3.1797 -6.0928 -3.8754 18 1 3.3952 -5.5750 -5.2504 19 1 3.1198 -7.5762 -3.9083 20 1 1.9022 -5.5575 -3.3398 21 6 8.0556 -4.7219 -2.4159 22 6 7.7557 -3.3460 -3.0161 23 6 4.1802 -2.6115 0.0108 24 1 -0.3633 -0.5138 0.8900 25 1 -0.3634 1.0277 0.0005 26 1 -0.3634 -0.5138 -0.8900 27 1 2.3792 1.5834 -1.0277 28 1 1.6085 2.0283 0.5138 29 1 3.1499 1.1383 0.5138 30 1 3.4417 -0.5953 -2.0923 31 1 4.4996 0.4901 -1.1321 32 1 6.2765 -1.1356 -1.0462 33 1 5.6316 -1.3998 -2.6989 34 1 6.8805 -3.1579 -0.4881 35 1 5.7757 -4.5526 -0.4385 36 1 3.9273 -6.4946 -1.1606 37 1 8.6104 -4.7516 -1.4781 38 1 8.2568 -5.5397 -3.1077 39 1 7.7596 -3.2593 -4.1027 40 1 8.1127 -2.4708 -2.4733 41 1 4.8284 -2.7646 0.8736 42 1 3.3484 -3.3152 0.0420 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602841307.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:22:39 Heat of formation + Delta-G solvation = -10.592153 kcal Electronic energy + Delta-G solvation = -21531.573550 eV Core-core repulsion = 18512.129222 eV Total energy + Delta-G solvation = -3019.444328 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.35122 -39.39245 -37.58619 -36.60409 -34.01837 -32.77260 -29.94806 -28.90572 -27.64226 -27.17382 -26.04453 -23.00887 -22.42633 -22.07394 -20.78159 -19.90903 -18.39400 -17.99620 -17.12294 -16.77409 -16.55825 -16.10408 -15.72876 -15.37740 -14.92127 -14.71355 -14.30398 -13.98295 -13.77286 -13.52851 -13.45584 -13.09134 -12.94790 -12.89646 -12.87848 -12.64204 -12.46181 -12.30071 -12.24871 -12.07207 -11.72942 -11.67777 -11.08840 -10.90644 -10.77411 -10.45975 -9.85984 -9.67898 -8.77726 -7.91436 -5.96850 1.36698 1.45389 1.50088 1.61076 2.06965 2.48733 3.14572 3.40913 3.51268 3.69171 3.80001 3.91754 4.18029 4.38085 4.41910 4.43120 4.44695 4.49151 4.56083 4.60259 4.76056 4.78799 4.81606 4.87683 4.88940 4.95120 5.00922 5.03056 5.14692 5.20185 5.22380 5.27133 5.43365 5.58556 5.59767 5.67925 6.06308 6.34178 6.44103 6.53463 6.69957 7.03236 7.18779 7.63972 9.07991 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019183 B = 0.006884 C = 0.005629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.284502 B = 4066.397193 C = 4972.651593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.621 5.621 3 C 0.069 3.931 4 C 0.512 3.488 5 O -0.587 6.587 6 C -0.108 4.108 7 H 0.133 0.867 8 C -0.094 4.094 9 C 0.037 3.963 10 N -0.502 5.502 11 C 0.109 3.891 12 C 0.036 3.964 13 C -0.484 4.484 14 H 0.039 0.961 15 C 0.053 3.947 16 N -0.890 5.890 17 Si 0.931 3.069 18 H -0.270 1.270 19 H -0.282 1.282 20 H -0.298 1.298 21 C -0.209 4.209 22 C -0.188 4.188 23 C 0.054 3.946 24 H 0.048 0.952 25 H 0.115 0.885 26 H 0.039 0.961 27 H 0.069 0.931 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.056 0.944 31 H 0.122 0.878 32 H 0.050 0.950 33 H 0.069 0.931 34 H 0.004 0.996 35 H 0.078 0.922 36 H 0.251 0.749 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.088 0.912 41 H 0.037 0.963 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.488 18.718 5.435 19.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.354 5.354 3 C -0.073 4.073 4 C 0.301 3.699 5 O -0.467 6.467 6 C -0.130 4.130 7 H 0.151 0.849 8 C -0.132 4.132 9 C -0.091 4.091 10 N -0.225 5.225 11 C -0.019 4.019 12 C 0.035 3.965 13 C -0.522 4.522 14 H 0.058 0.942 15 C -0.148 4.148 16 N -0.528 5.528 17 Si 0.760 3.240 18 H -0.194 1.194 19 H -0.208 1.208 20 H -0.226 1.226 21 C -0.247 4.247 22 C -0.225 4.225 23 C -0.075 4.075 24 H 0.067 0.933 25 H 0.134 0.866 26 H 0.058 0.942 27 H 0.088 0.912 28 H 0.117 0.883 29 H 0.105 0.895 30 H 0.075 0.925 31 H 0.140 0.860 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.022 0.978 35 H 0.096 0.904 36 H 0.060 0.940 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.106 0.894 41 H 0.055 0.945 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.289 17.897 5.173 18.918 hybrid contribution -0.370 -0.787 -0.005 0.870 sum -3.659 17.110 5.168 18.244 Atomic orbital electron populations 1.21707 0.78796 1.04093 1.00956 1.47881 1.07587 1.06817 1.73105 1.22243 0.98137 0.83447 1.03426 1.20938 0.90928 0.83168 0.74864 1.90693 1.71141 1.33448 1.51399 1.22137 0.90764 0.97735 1.02322 0.84934 1.22496 0.96591 0.99982 0.94093 1.23287 0.96300 0.88510 1.01014 1.64430 1.21746 1.08520 1.27847 1.21583 0.88952 0.95400 0.95978 1.19009 0.86306 0.96924 0.94255 1.20466 1.09543 1.30706 0.91474 0.94235 1.25199 0.98351 0.95856 0.95405 1.69897 1.34744 1.34226 1.13962 0.85937 0.80827 0.77448 0.79813 1.19448 1.20796 1.22560 1.22953 1.04472 0.96279 1.01036 1.22875 1.07353 0.93473 0.98795 1.22616 0.97504 0.95486 0.91857 0.93305 0.86626 0.94245 0.91236 0.88349 0.89536 0.92489 0.85954 0.93228 0.91250 0.97824 0.90363 0.93950 0.90631 0.91504 0.91011 0.89409 0.94460 0.93145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.77 10.16 127.77 1.30 3.07 16 2 N -0.62 -14.25 3.27 -871.88 -2.85 -17.10 16 3 C 0.07 0.81 9.05 127.77 1.16 1.97 16 4 C 0.51 17.03 6.92 87.66 0.61 17.63 16 5 O -0.59 -26.65 15.24 -3.05 -0.05 -26.69 16 6 C -0.11 -3.17 2.46 -10.66 -0.03 -3.19 16 7 H 0.13 2.79 7.31 -2.39 -0.02 2.78 16 8 C -0.09 -2.44 5.34 31.80 0.17 -2.27 16 9 C 0.04 1.24 6.05 86.65 0.52 1.77 16 10 N -0.50 -22.39 4.75 -883.00 -4.20 -26.59 16 11 C 0.11 5.21 3.81 86.30 0.33 5.54 16 12 C 0.04 1.79 1.84 -52.93 -0.10 1.70 16 13 C -0.48 -27.56 8.72 25.60 0.22 -27.33 16 14 H 0.04 2.29 7.83 -2.91 -0.02 2.26 16 15 C 0.05 3.06 5.15 84.65 0.44 3.50 16 16 N -0.89 -52.81 10.74 21.44 0.23 -52.58 16 17 Si 0.93 47.83 29.55 68.60 2.03 49.86 16 18 H -0.27 -13.42 7.11 99.48 0.71 -12.71 16 19 H -0.28 -13.99 7.11 99.48 0.71 -13.28 16 20 H -0.30 -16.06 7.11 99.48 0.71 -15.35 16 21 C -0.21 -9.51 9.96 30.62 0.30 -9.21 16 22 C -0.19 -7.92 9.64 30.62 0.30 -7.63 16 23 C 0.05 2.22 6.22 86.45 0.54 2.75 16 24 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.12 1.29 7.80 -2.38 -0.02 1.27 16 26 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.07 0.72 8.02 -2.39 -0.02 0.70 16 28 H 0.10 0.62 7.92 -2.39 -0.02 0.60 16 29 H 0.09 0.83 5.98 -2.39 -0.01 0.82 16 30 H 0.06 1.70 7.86 -2.39 -0.02 1.68 16 31 H 0.12 1.92 7.42 -2.39 -0.02 1.90 16 32 H 0.05 1.49 7.73 -2.39 -0.02 1.48 16 33 H 0.07 2.53 8.13 -2.39 -0.02 2.51 16 34 H 0.00 0.17 7.64 -2.39 -0.02 0.15 16 35 H 0.08 4.31 5.90 -2.39 -0.01 4.30 16 36 H 0.25 14.67 8.32 -92.71 -0.77 13.90 16 37 H 0.08 3.18 8.14 -2.38 -0.02 3.16 16 38 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 39 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 40 H 0.09 3.23 8.14 -2.39 -0.02 3.22 16 41 H 0.04 1.44 7.77 -2.39 -0.02 1.43 16 42 H 0.05 2.57 6.42 -2.39 -0.02 2.56 16 Total: -1.00 -75.24 331.11 1.90 -73.34 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: 0.98 Total: 11.47 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: 5.76 Total: -11.70 kcal Atomic # 7 Polarization: -89.45 SS G_CDS: -6.82 Total: -96.27 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.05 Total: -26.69 kcal Atomic # 14 Polarization: 47.83 SS G_CDS: 2.03 Total: 49.86 kcal Total: -75.24 1.90 -73.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602841307.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.748 kcal (2) G-P(sol) polarization free energy of solvation -75.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds