Wall clock time and date at job start Mon Mar 30 2020 01:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.47267 * 2 1 4 4 H 1.09002 * 109.48846 * 305.54646 * 3 2 1 5 5 C 1.53051 * 109.48651 * 65.58190 * 3 2 1 6 6 N 1.46957 * 109.36081 * 178.38926 * 5 3 2 7 7 C 1.46900 * 110.99728 * 176.81719 * 6 5 3 8 8 C 1.52999 * 109.47341 * 170.00215 * 7 6 5 9 9 C 1.46960 * 110.88191 * 300.67919 * 6 5 3 10 10 C 1.53057 * 109.35958 * 59.32504 * 9 6 5 11 11 N 1.46955 * 109.48753 * 185.49858 * 3 2 1 12 12 C 1.46902 * 110.99862 * 56.82545 * 11 3 2 13 13 C 1.53003 * 109.46682 * 177.08260 * 12 11 3 14 14 C 1.50693 * 115.55084 * 291.52996 * 13 12 11 15 15 H 1.08002 * 120.00242 * 143.85804 * 14 13 12 16 16 C 1.37872 * 120.00231 * 323.85778 * 14 13 12 17 17 N 1.31510 * 120.00586 * 169.40558 * 16 14 13 18 18 Si 1.86805 * 119.99705 * 349.41035 * 16 14 13 19 19 H 1.48501 * 109.47196 * 95.97686 * 18 16 14 20 20 H 1.48504 * 109.46992 * 215.96831 * 18 16 14 21 21 H 1.48494 * 109.47285 * 335.97427 * 18 16 14 22 22 C 1.53005 * 117.49622 * 145.86022 * 13 12 11 23 23 C 1.53008 * 117.49984 * 77.20016 * 13 12 11 24 24 H 1.09003 * 109.47056 * 304.09787 * 1 2 3 25 25 H 1.09002 * 109.46870 * 64.09654 * 1 2 3 26 26 H 1.08998 * 109.47382 * 184.09655 * 1 2 3 27 27 H 1.09003 * 109.46658 * 240.00536 * 2 1 3 28 28 H 1.08993 * 109.47122 * 120.00430 * 2 1 3 29 29 H 1.08993 * 109.49469 * 298.36066 * 5 3 2 30 30 H 1.09003 * 109.48455 * 58.42743 * 5 3 2 31 31 H 1.09001 * 109.46912 * 289.99925 * 7 6 5 32 32 H 1.09003 * 109.47518 * 49.99928 * 7 6 5 33 33 H 1.08998 * 109.47382 * 179.97438 * 8 7 6 34 34 H 1.09001 * 109.46881 * 299.99729 * 8 7 6 35 35 H 1.09003 * 109.47049 * 59.99425 * 8 7 6 36 36 H 1.08998 * 109.48511 * 179.28867 * 9 6 5 37 37 H 1.08999 * 109.49127 * 299.35623 * 9 6 5 38 38 H 1.09003 * 109.48857 * 61.56186 * 10 9 6 39 39 H 1.08998 * 109.48184 * 181.60897 * 10 9 6 40 40 H 1.08998 * 109.47177 * 297.08007 * 12 11 3 41 41 H 1.08998 * 109.47458 * 57.08605 * 12 11 3 42 42 H 0.97001 * 120.00430 * 179.97438 * 17 16 14 43 43 H 1.08993 * 117.50074 * 359.97438 * 22 13 12 44 44 H 1.09000 * 117.49591 * 145.02496 * 22 13 12 45 45 H 1.08996 * 117.49876 * 214.97666 * 23 13 12 46 46 H 1.09002 * 117.49359 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5981 1.9845 -0.8361 5 6 1.6480 2.1227 1.3138 6 7 2.1723 3.4955 1.3271 7 6 1.7522 4.2077 2.5413 8 6 2.5111 5.5322 2.6441 9 6 3.6359 3.4985 1.1948 10 6 4.0279 2.8183 -0.1191 11 7 3.5036 1.4450 -0.1327 12 6 3.9233 0.7325 -1.3469 13 6 5.4443 0.8188 -1.4887 14 6 5.9918 2.1886 -1.7963 15 1 6.9335 2.5020 -1.3704 16 6 5.2905 3.0421 -2.6214 17 7 5.6534 4.3018 -2.7258 18 14 3.8247 2.4090 -3.5910 19 1 2.5740 2.7045 -2.8469 20 1 3.7817 3.0776 -4.9163 21 1 3.9530 0.9418 -3.7806 22 6 6.1661 -0.3840 -2.0996 23 6 6.2897 -0.0969 -0.6011 24 1 -0.3633 0.5761 0.8510 25 1 -0.3633 0.4490 -0.9244 26 1 -0.3634 -1.0250 0.0734 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 0.5618 2.1475 1.4005 30 1 2.0673 1.5651 2.1512 31 1 0.6812 4.4053 2.4944 32 1 1.9706 3.5950 3.4160 33 1 2.1990 6.0608 3.5448 34 1 3.5820 5.3346 2.6911 35 1 2.2927 6.1449 1.7695 36 1 3.9989 4.5263 1.1946 37 1 4.0778 2.9565 2.0309 38 1 3.6085 3.3759 -0.9566 39 1 5.1142 2.7939 -0.2059 40 1 3.6237 -0.3131 -1.2765 41 1 3.4509 1.1881 -2.2172 42 1 5.1602 4.9021 -3.3066 43 1 5.5576 -1.2369 -2.4001 44 1 7.0373 -0.1845 -2.7236 45 1 7.2420 0.2914 -0.2399 46 1 5.7622 -0.7604 0.0842 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602841509.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:50 Heat of formation + Delta-G solvation = 39.181829 kcal Electronic energy + Delta-G solvation = -22658.292958 eV Core-core repulsion = 19776.840086 eV Total energy + Delta-G solvation = -2881.452871 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.95982 -38.73866 -36.71115 -34.80485 -34.06021 -31.84894 -30.38885 -28.70899 -27.60255 -25.58061 -24.71452 -23.09909 -22.99814 -21.33363 -20.96981 -20.67736 -18.38637 -17.54027 -17.24269 -16.29119 -16.21108 -15.79625 -15.53946 -15.30035 -15.01788 -14.82688 -14.67541 -14.27783 -14.13427 -13.77393 -13.35463 -13.09394 -12.91345 -12.71612 -12.58169 -12.47482 -12.33155 -12.13711 -12.04636 -11.99357 -11.82417 -11.58799 -11.46740 -11.27383 -11.16693 -10.84609 -10.53552 -10.27975 -9.25443 -8.97420 -8.34360 -6.17217 1.20256 1.28051 1.35157 2.25001 2.81242 2.99545 3.03860 3.61858 3.82636 3.96684 4.04821 4.14514 4.20457 4.25561 4.26294 4.38835 4.44069 4.46396 4.55641 4.57988 4.60545 4.65142 4.68819 4.78182 4.81748 4.88975 4.96961 4.98455 5.01741 5.10755 5.12509 5.13918 5.22124 5.27836 5.29577 5.33950 5.43013 5.56788 5.65214 5.71341 6.09237 6.14149 6.32487 6.35770 6.46297 6.70544 7.30910 8.79771 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.015590 B = 0.009062 C = 0.007505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.553924 B = 3089.066978 C = 3730.016054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.114 4.114 3 C 0.074 3.926 4 H 0.009 0.991 5 C 0.075 3.925 6 N -0.562 5.562 7 C 0.053 3.947 8 C -0.153 4.153 9 C 0.064 3.936 10 C 0.055 3.945 11 N -0.517 5.517 12 C 0.087 3.913 13 C -0.023 4.023 14 C -0.470 4.470 15 H 0.044 0.956 16 C 0.046 3.954 17 N -0.924 5.924 18 Si 0.937 3.063 19 H -0.291 1.291 20 H -0.312 1.312 21 H -0.249 1.249 22 C -0.198 4.198 23 C -0.155 4.155 24 H 0.066 0.934 25 H 0.043 0.957 26 H 0.074 0.926 27 H 0.056 0.944 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.044 0.956 31 H 0.084 0.916 32 H 0.040 0.960 33 H 0.082 0.918 34 H 0.050 0.950 35 H 0.049 0.951 36 H 0.073 0.927 37 H 0.036 0.964 38 H 0.001 0.999 39 H 0.113 0.887 40 H 0.084 0.916 41 H 0.001 0.999 42 H 0.263 0.737 43 H 0.091 0.909 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.566 -6.216 9.673 15.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.152 4.152 3 C -0.034 4.034 4 H 0.027 0.973 5 C -0.053 4.053 6 N -0.288 5.288 7 C -0.074 4.074 8 C -0.210 4.210 9 C -0.064 4.064 10 C -0.073 4.073 11 N -0.241 5.241 12 C -0.040 4.040 13 C -0.024 4.024 14 C -0.507 4.507 15 H 0.062 0.938 16 C -0.154 4.154 17 N -0.562 5.562 18 Si 0.770 3.230 19 H -0.220 1.220 20 H -0.242 1.242 21 H -0.174 1.174 22 C -0.236 4.236 23 C -0.193 4.193 24 H 0.085 0.915 25 H 0.062 0.938 26 H 0.093 0.907 27 H 0.075 0.925 28 H 0.098 0.902 29 H 0.112 0.888 30 H 0.062 0.938 31 H 0.102 0.898 32 H 0.058 0.942 33 H 0.100 0.900 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.054 0.946 38 H 0.020 0.980 39 H 0.131 0.869 40 H 0.103 0.897 41 H 0.018 0.982 42 H 0.073 0.927 43 H 0.109 0.891 44 H 0.095 0.905 45 H 0.091 0.909 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.590 -6.022 9.612 15.518 hybrid contribution -0.294 0.422 -1.083 1.199 sum -10.884 -5.599 8.529 14.919 Atomic orbital electron populations 1.21771 0.93849 1.02790 1.01852 1.21590 0.96971 0.93943 1.02711 1.21877 0.87957 0.96939 0.96670 0.97264 1.22137 1.00088 0.87386 0.95677 1.62264 1.10893 1.16432 1.39221 1.22125 1.00612 0.94905 0.89739 1.21899 1.00130 0.96674 1.02324 1.22217 0.87463 0.99844 0.96855 1.22838 1.03354 0.86720 0.94376 1.62254 1.09144 1.15987 1.36719 1.22012 0.94556 0.98023 0.89418 1.19307 0.90183 0.90642 1.02259 1.20276 1.06159 0.96727 1.27582 0.93801 1.25356 0.98855 0.94266 0.96902 1.69991 1.42506 1.04628 1.39117 0.86211 0.80589 0.79210 0.77000 1.21953 1.24190 1.17361 1.23140 1.03617 1.00783 0.96069 1.22651 1.00985 1.03266 0.92354 0.91480 0.93801 0.90712 0.92511 0.90211 0.88791 0.93771 0.89778 0.94222 0.89965 0.93147 0.93220 0.90856 0.94580 0.98030 0.86945 0.89745 0.98154 0.92737 0.89073 0.90505 0.90853 0.88507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 9.77 71.98 0.70 -2.38 16 2 C -0.11 -3.10 5.23 30.60 0.16 -2.94 16 3 C 0.07 2.59 2.02 44.92 0.09 2.68 16 4 H 0.01 0.39 7.95 -2.39 -0.02 0.37 16 5 C 0.07 2.24 4.59 86.31 0.40 2.64 16 6 N -0.56 -18.71 4.86 -895.70 -4.35 -23.07 16 7 C 0.05 1.35 6.00 86.30 0.52 1.87 16 8 C -0.15 -3.74 9.18 71.98 0.66 -3.08 16 9 C 0.06 2.45 4.93 86.31 0.43 2.87 16 10 C 0.05 2.50 3.91 86.30 0.34 2.83 16 11 N -0.52 -20.91 4.63 -870.34 -4.03 -24.94 16 12 C 0.09 3.67 3.67 86.30 0.32 3.99 16 13 C -0.02 -1.04 1.15 -52.92 -0.06 -1.10 16 14 C -0.47 -25.62 6.48 25.60 0.17 -25.45 16 15 H 0.04 2.66 8.06 -2.91 -0.02 2.63 16 16 C 0.05 2.59 3.61 84.65 0.31 2.89 16 17 N -0.92 -55.62 13.96 21.44 0.30 -55.32 16 18 Si 0.94 47.17 22.81 68.60 1.56 48.73 16 19 H -0.29 -14.91 6.73 99.48 0.67 -14.24 16 20 H -0.31 -15.96 7.11 99.48 0.71 -15.25 16 21 H -0.25 -11.67 6.44 99.48 0.64 -11.03 16 22 C -0.20 -7.88 9.91 30.62 0.30 -7.58 16 23 C -0.16 -6.08 9.96 30.62 0.30 -5.77 16 24 H 0.07 1.27 6.44 -2.39 -0.02 1.26 16 25 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.06 1.64 6.12 -2.39 -0.01 1.62 16 28 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.09 2.36 6.58 -2.39 -0.02 2.34 16 30 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.08 1.87 8.14 -2.39 -0.02 1.86 16 32 H 0.04 0.93 8.08 -2.39 -0.02 0.91 16 33 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.05 1.34 6.26 -2.39 -0.01 1.32 16 35 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.07 2.83 5.99 -2.39 -0.01 2.81 16 37 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.00 0.08 5.51 -2.39 -0.01 0.06 16 39 H 0.11 5.87 4.54 -2.39 -0.01 5.86 16 40 H 0.08 3.14 6.23 -2.39 -0.01 3.13 16 41 H 0.00 0.06 1.92 -2.39 0.00 0.05 16 42 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 43 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 44 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 45 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 46 H 0.10 3.35 8.14 -2.39 -0.02 3.33 16 Total: -1.00 -61.69 326.64 -1.05 -62.74 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: 0.83 Total: 20.37 kcal Atomic # 6 Polarization: -33.15 SS G_CDS: 4.63 Total: -28.52 kcal Atomic # 7 Polarization: -95.24 SS G_CDS: -8.08 Total: -103.32 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 1.56 Total: 48.73 kcal Total: -61.69 -1.05 -62.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602841509.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.922 kcal (2) G-P(sol) polarization free energy of solvation -61.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds