Wall clock time and date at job start Mon Mar 30 2020 01:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.47261 * 2 1 4 4 C 1.53001 * 109.47205 * 239.99939 * 2 1 3 5 5 C 1.53002 * 109.47159 * 179.97438 * 4 2 1 6 6 C 1.53004 * 109.47009 * 60.00580 * 5 4 2 7 7 C 1.53001 * 109.46687 * 299.99709 * 6 5 4 8 8 H 1.08998 * 109.47283 * 300.00028 * 7 6 5 9 9 N 1.46901 * 109.46908 * 180.02562 * 7 6 5 10 10 C 1.46899 * 111.00281 * 154.00326 * 9 7 6 11 11 C 1.53042 * 109.46311 * 151.64689 * 10 9 7 12 12 C 1.53185 * 109.31509 * 181.38727 * 11 10 9 13 13 N 1.46929 * 108.77483 * 305.37007 * 12 11 10 14 14 C 1.36939 * 120.62723 * 233.58455 * 13 12 11 15 15 H 1.08003 * 120.00184 * 149.59863 * 14 13 12 16 16 C 1.38812 * 119.99894 * 329.59525 * 14 13 12 17 17 N 1.31613 * 120.00312 * 334.73338 * 16 14 13 18 18 Si 1.86803 * 119.99705 * 154.73242 * 16 14 13 19 19 H 1.48497 * 109.47242 * 90.00470 * 18 16 14 20 20 H 1.48502 * 109.47208 * 209.99924 * 18 16 14 21 21 H 1.48497 * 109.47333 * 329.99824 * 18 16 14 22 22 C 1.46918 * 118.74181 * 53.85785 * 13 12 11 23 23 C 1.53034 * 109.46056 * 271.72125 * 10 9 7 24 24 C 1.52995 * 109.47205 * 60.00092 * 7 6 5 25 25 H 1.08998 * 109.47052 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47190 * 299.99945 * 1 2 3 27 27 H 1.09002 * 109.46981 * 59.99650 * 1 2 3 28 28 H 1.09002 * 109.46815 * 60.00309 * 4 2 1 29 29 H 1.08998 * 109.47283 * 300.00063 * 4 2 1 30 30 H 1.08993 * 109.47693 * 300.00057 * 5 4 2 31 31 H 1.09003 * 109.46791 * 179.97438 * 5 4 2 32 32 H 1.08994 * 109.47460 * 179.97438 * 6 5 4 33 33 H 1.09007 * 109.47295 * 59.99473 * 6 5 4 34 34 H 1.00901 * 110.99976 * 277.95779 * 9 7 6 35 35 H 1.09010 * 109.45438 * 31.68061 * 10 9 7 36 36 H 1.09001 * 109.49148 * 61.43257 * 11 10 9 37 37 H 1.09004 * 109.49835 * 301.34535 * 11 10 9 38 38 H 1.08993 * 109.59162 * 185.57653 * 12 11 10 39 39 H 1.09005 * 109.70247 * 65.22355 * 12 11 10 40 40 H 0.96999 * 120.00172 * 355.00742 * 17 16 14 41 41 H 1.09001 * 109.58471 * 65.92755 * 22 13 12 42 42 H 1.09000 * 109.58978 * 186.35400 * 22 13 12 43 43 H 1.09004 * 109.49523 * 298.55888 * 23 10 9 44 44 H 1.08997 * 109.50039 * 58.66002 * 23 10 9 45 45 H 1.09002 * 109.47642 * 60.00218 * 24 7 6 46 46 H 1.09004 * 109.47190 * 179.97438 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7207 -1.2495 6 6 4.0805 -1.4417 -0.0003 7 6 3.5705 -0.7204 1.2489 8 1 3.9335 0.3073 1.2487 9 7 4.0611 -1.4123 2.4483 10 6 4.1462 -0.4913 3.5896 11 6 3.9574 -1.2737 4.8914 12 6 4.0121 -0.3053 6.0770 13 7 5.2663 0.4571 6.0074 14 6 6.1173 0.4993 7.0794 15 1 7.1806 0.6039 6.9210 16 6 5.6135 0.4078 8.3696 17 7 4.3739 0.7725 8.6195 18 14 6.6951 -0.2331 9.7513 19 1 7.4182 0.9010 10.3805 20 1 5.8499 -0.9071 10.7695 21 1 7.6767 -1.2027 9.2024 22 6 5.5870 1.1780 4.7682 23 6 5.5172 0.1884 3.5951 24 6 2.0405 -0.7209 1.2492 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6767 -0.2074 -2.1392 29 1 1.6767 -1.7489 -1.2493 30 1 3.9330 0.3070 -1.2498 31 1 3.9333 -1.2350 -2.1393 32 1 5.1704 -1.4417 -0.0007 33 1 3.7174 -2.4695 -0.0001 34 1 3.4820 -2.2087 2.6687 35 1 3.3661 0.2654 3.5044 36 1 4.7515 -2.0139 4.9892 37 1 2.9905 -1.7766 4.8766 38 1 3.9775 -0.8675 7.0100 39 1 3.1653 0.3796 6.0315 40 1 3.8354 1.1727 7.9188 41 1 4.8659 1.9811 4.6156 42 1 6.5919 1.5946 4.8373 43 1 6.2967 -0.5656 3.7053 44 1 5.6605 0.7262 2.6580 45 1 1.6774 -1.7487 1.2494 46 1 1.6772 -0.2075 2.1394 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610270914.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:56 Heat of formation + Delta-G solvation = -16.494592 kcal Electronic energy + Delta-G solvation = -21350.107474 eV Core-core repulsion = 18466.240291 eV Total energy + Delta-G solvation = -2883.867182 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.41081 -37.66112 -34.96577 -32.75119 -32.00126 -30.39530 -29.55935 -27.60815 -26.52026 -24.37056 -22.62011 -22.21863 -21.35616 -20.65367 -19.93231 -19.00998 -17.31616 -15.66962 -15.40560 -14.81271 -14.46553 -14.32476 -14.09323 -13.81186 -13.64244 -13.47142 -13.24402 -13.01257 -12.58594 -12.48702 -12.04953 -11.94757 -11.75628 -11.54031 -11.19732 -11.03861 -10.98424 -10.82746 -10.66047 -10.59477 -10.37307 -10.29893 -10.22056 -10.02422 -9.90961 -9.64556 -9.24093 -8.31345 -8.10950 -6.81540 -6.04317 -3.20982 3.51890 3.56418 3.71849 4.24090 4.52624 4.61529 4.62844 4.80528 5.01402 5.05633 5.25887 5.29774 5.33921 5.37730 5.42888 5.48419 5.50930 5.54087 5.56251 5.66227 5.69673 5.80526 5.88547 5.89557 5.94600 6.03358 6.08902 6.10612 6.16538 6.26003 6.29065 6.31579 6.41787 6.51717 6.54814 6.56976 6.79516 6.94410 7.09982 7.19049 7.43407 7.65929 8.08565 8.62362 9.16882 9.89095 10.35907 11.24182 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.038471 B = 0.003940 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.652048 B = 7104.680480 C = 7404.832362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 H 0.068 0.932 4 C -0.113 4.113 5 C -0.119 4.119 6 C -0.105 4.105 7 C 0.089 3.911 8 H 0.074 0.926 9 N -0.684 5.684 10 C 0.098 3.902 11 C -0.137 4.137 12 C 0.156 3.844 13 N -0.598 5.598 14 C -0.350 4.350 15 H 0.054 0.946 16 C -0.023 4.023 17 N -0.916 5.916 18 Si 1.066 2.934 19 H -0.294 1.294 20 H -0.286 1.286 21 H -0.292 1.292 22 C 0.146 3.854 23 C -0.115 4.115 24 C -0.142 4.142 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.335 0.665 35 H 0.036 0.964 36 H 0.066 0.934 37 H 0.046 0.954 38 H 0.076 0.924 39 H 0.014 0.986 40 H 0.268 0.732 41 H 0.012 0.988 42 H 0.055 0.945 43 H 0.063 0.937 44 H 0.046 0.954 45 H 0.061 0.939 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.537 -3.658 -18.650 19.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.108 4.108 3 H 0.087 0.913 4 C -0.151 4.151 5 C -0.158 4.158 6 C -0.143 4.143 7 C -0.022 4.022 8 H 0.092 0.908 9 N -0.313 5.313 10 C -0.011 4.011 11 C -0.176 4.176 12 C 0.030 3.970 13 N -0.322 5.322 14 C -0.479 4.479 15 H 0.072 0.928 16 C -0.226 4.226 17 N -0.555 5.555 18 Si 0.896 3.104 19 H -0.222 1.222 20 H -0.212 1.212 21 H -0.218 1.218 22 C 0.019 3.981 23 C -0.155 4.155 24 C -0.181 4.181 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.153 0.847 35 H 0.054 0.946 36 H 0.085 0.915 37 H 0.064 0.936 38 H 0.094 0.906 39 H 0.032 0.968 40 H 0.079 0.921 41 H 0.030 0.970 42 H 0.074 0.926 43 H 0.082 0.918 44 H 0.064 0.936 45 H 0.080 0.920 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.811 -3.994 -17.163 18.266 hybrid contribution -1.029 0.582 -1.455 1.875 sum -5.840 -3.412 -18.618 19.809 Atomic orbital electron populations 1.21835 0.95451 1.01650 1.01534 1.21080 0.95247 0.99626 0.94846 0.91335 1.21597 0.95723 1.00496 0.97235 1.21541 0.95423 1.00864 0.97927 1.21490 1.00899 0.99001 0.92920 1.21591 0.91714 0.98142 0.90709 0.90785 1.60708 1.56143 1.10262 1.04221 1.21433 0.97140 0.93430 0.89124 1.22295 1.00062 0.99423 0.95865 1.20856 0.88021 0.92064 0.96109 1.44102 1.22314 1.54137 1.11625 1.19959 0.89481 1.52241 0.86224 0.92849 1.25886 0.99524 0.99217 0.97927 1.70753 1.10429 1.38718 1.35645 0.83534 0.74818 0.76456 0.75628 1.22164 1.21211 1.21838 1.21025 0.98385 0.92180 0.86497 1.22066 0.96543 0.99035 0.97887 1.22338 0.97309 1.00687 0.97774 0.92833 0.92727 0.92867 0.92318 0.92129 0.92089 0.92078 0.91442 0.92276 0.84654 0.94611 0.91542 0.93552 0.90564 0.96833 0.92124 0.97035 0.92625 0.91773 0.93574 0.92006 0.92124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.19 37.16 0.34 -0.94 16 2 C -0.09 -0.85 2.72 -90.62 -0.25 -1.10 16 3 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 4 C -0.11 -0.98 5.20 -26.73 -0.14 -1.12 16 5 C -0.12 -1.09 5.92 -26.73 -0.16 -1.24 16 6 C -0.10 -1.13 5.53 -26.73 -0.15 -1.28 16 7 C 0.09 1.09 2.27 -67.71 -0.15 0.93 16 8 H 0.07 1.01 7.36 -51.93 -0.38 0.62 16 9 N -0.68 -9.81 6.07 -99.70 -0.61 -10.42 16 10 C 0.10 1.68 2.25 -67.67 -0.15 1.53 16 11 C -0.14 -2.61 5.33 -26.61 -0.14 -2.76 16 12 C 0.16 3.71 4.74 -3.71 -0.02 3.69 16 13 N -0.60 -15.34 2.80 -172.06 -0.48 -15.82 16 14 C -0.35 -9.98 9.45 -15.06 -0.14 -10.12 16 15 H 0.05 1.54 7.95 -52.48 -0.42 1.12 16 16 C -0.02 -0.67 4.65 -17.43 -0.08 -0.75 16 17 N -0.92 -27.75 12.55 55.49 0.70 -27.06 16 18 Si 1.07 25.58 29.99 -169.99 -5.10 20.49 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 C 0.15 3.20 6.54 -3.49 -0.02 3.18 16 23 C -0.12 -2.15 5.62 -26.39 -0.15 -2.30 16 24 C -0.14 -1.57 4.44 -26.73 -0.12 -1.69 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.34 4.54 8.01 -39.29 -0.31 4.23 16 35 H 0.04 0.64 7.19 -51.92 -0.37 0.27 16 36 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 37 H 0.05 0.79 8.10 -51.93 -0.42 0.36 16 38 H 0.08 2.02 6.51 -51.93 -0.34 1.68 16 39 H 0.01 0.33 7.87 -51.93 -0.41 -0.08 16 40 H 0.27 8.21 6.82 -40.82 -0.28 7.93 16 41 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 42 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 43 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 44 H 0.05 0.77 7.68 -51.93 -0.40 0.38 16 45 H 0.06 0.67 8.13 -51.93 -0.42 0.24 16 46 H 0.06 0.76 7.55 -51.93 -0.39 0.36 16 LS Contribution 343.54 15.07 5.18 5.18 Total: -1.00 -29.57 343.54 -10.49 -40.06 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -8.85 Total: 1.55 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: -1.33 Total: -13.97 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: -0.39 Total: -53.30 kcal Atomic # 14 Polarization: 25.58 SS G_CDS: -5.10 Total: 20.49 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.57 -10.49 -40.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610270914.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.567 kcal (2) G-P(sol) polarization free energy of solvation -29.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds