Wall clock time and date at job start Mon Mar 30 2020 01:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.47261 * 2 1 4 4 C 1.53001 * 109.47205 * 239.99939 * 2 1 3 5 5 C 1.53002 * 109.47159 * 179.97438 * 4 2 1 6 6 C 1.53004 * 109.47009 * 60.00580 * 5 4 2 7 7 C 1.53001 * 109.46687 * 299.99709 * 6 5 4 8 8 H 1.08998 * 109.47283 * 300.00028 * 7 6 5 9 9 N 1.46901 * 109.46908 * 180.02562 * 7 6 5 10 10 C 1.46899 * 111.00281 * 154.00326 * 9 7 6 11 11 C 1.53042 * 109.46311 * 151.64689 * 10 9 7 12 12 C 1.53185 * 109.31509 * 181.38727 * 11 10 9 13 13 N 1.46929 * 108.77483 * 305.37007 * 12 11 10 14 14 C 1.36939 * 120.62723 * 233.58455 * 13 12 11 15 15 H 1.08003 * 120.00184 * 149.59863 * 14 13 12 16 16 C 1.38812 * 119.99894 * 329.59525 * 14 13 12 17 17 N 1.31613 * 120.00312 * 334.73338 * 16 14 13 18 18 Si 1.86803 * 119.99705 * 154.73242 * 16 14 13 19 19 H 1.48497 * 109.47242 * 90.00470 * 18 16 14 20 20 H 1.48502 * 109.47208 * 209.99924 * 18 16 14 21 21 H 1.48497 * 109.47333 * 329.99824 * 18 16 14 22 22 C 1.46918 * 118.74181 * 53.85785 * 13 12 11 23 23 C 1.53034 * 109.46056 * 271.72125 * 10 9 7 24 24 C 1.52995 * 109.47205 * 60.00092 * 7 6 5 25 25 H 1.08998 * 109.47052 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47190 * 299.99945 * 1 2 3 27 27 H 1.09002 * 109.46981 * 59.99650 * 1 2 3 28 28 H 1.09002 * 109.46815 * 60.00309 * 4 2 1 29 29 H 1.08998 * 109.47283 * 300.00063 * 4 2 1 30 30 H 1.08993 * 109.47693 * 300.00057 * 5 4 2 31 31 H 1.09003 * 109.46791 * 179.97438 * 5 4 2 32 32 H 1.08994 * 109.47460 * 179.97438 * 6 5 4 33 33 H 1.09007 * 109.47295 * 59.99473 * 6 5 4 34 34 H 1.00901 * 110.99976 * 277.95779 * 9 7 6 35 35 H 1.09010 * 109.45438 * 31.68061 * 10 9 7 36 36 H 1.09001 * 109.49148 * 61.43257 * 11 10 9 37 37 H 1.09004 * 109.49835 * 301.34535 * 11 10 9 38 38 H 1.08993 * 109.59162 * 185.57653 * 12 11 10 39 39 H 1.09005 * 109.70247 * 65.22355 * 12 11 10 40 40 H 0.96999 * 120.00172 * 355.00742 * 17 16 14 41 41 H 1.09001 * 109.58471 * 65.92755 * 22 13 12 42 42 H 1.09000 * 109.58978 * 186.35400 * 22 13 12 43 43 H 1.09004 * 109.49523 * 298.55888 * 23 10 9 44 44 H 1.08997 * 109.50039 * 58.66002 * 23 10 9 45 45 H 1.09002 * 109.47642 * 60.00218 * 24 7 6 46 46 H 1.09004 * 109.47190 * 179.97438 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7207 -1.2495 6 6 4.0805 -1.4417 -0.0003 7 6 3.5705 -0.7204 1.2489 8 1 3.9335 0.3073 1.2487 9 7 4.0611 -1.4123 2.4483 10 6 4.1462 -0.4913 3.5896 11 6 3.9574 -1.2737 4.8914 12 6 4.0121 -0.3053 6.0770 13 7 5.2663 0.4571 6.0074 14 6 6.1173 0.4993 7.0794 15 1 7.1806 0.6039 6.9210 16 6 5.6135 0.4078 8.3696 17 7 4.3739 0.7725 8.6195 18 14 6.6951 -0.2331 9.7513 19 1 7.4182 0.9010 10.3805 20 1 5.8499 -0.9071 10.7695 21 1 7.6767 -1.2027 9.2024 22 6 5.5870 1.1780 4.7682 23 6 5.5172 0.1884 3.5951 24 6 2.0405 -0.7209 1.2492 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6767 -0.2074 -2.1392 29 1 1.6767 -1.7489 -1.2493 30 1 3.9330 0.3070 -1.2498 31 1 3.9333 -1.2350 -2.1393 32 1 5.1704 -1.4417 -0.0007 33 1 3.7174 -2.4695 -0.0001 34 1 3.4820 -2.2087 2.6687 35 1 3.3661 0.2654 3.5044 36 1 4.7515 -2.0139 4.9892 37 1 2.9905 -1.7766 4.8766 38 1 3.9775 -0.8675 7.0100 39 1 3.1653 0.3796 6.0315 40 1 3.8354 1.1727 7.9188 41 1 4.8659 1.9811 4.6156 42 1 6.5919 1.5946 4.8373 43 1 6.2967 -0.5656 3.7053 44 1 5.6605 0.7262 2.6580 45 1 1.6774 -1.7487 1.2494 46 1 1.6772 -0.2075 2.1394 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610270914.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:56 Heat of formation + Delta-G solvation = -32.961834 kcal Electronic energy + Delta-G solvation = -21350.821547 eV Core-core repulsion = 18466.240291 eV Total energy + Delta-G solvation = -2884.581255 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.47814 -39.15016 -36.45807 -34.21644 -33.12235 -31.99753 -31.24302 -28.95740 -27.27754 -26.27957 -24.14268 -23.57773 -22.67751 -21.69154 -20.93668 -20.54980 -19.36356 -16.85267 -16.49810 -16.21511 -15.94067 -15.68460 -15.37932 -15.28463 -15.15741 -14.77274 -14.57090 -14.30710 -14.02501 -13.43068 -13.29665 -13.26016 -12.81423 -12.75537 -12.63116 -12.52219 -12.40709 -12.09497 -11.99903 -11.90878 -11.83496 -11.72458 -11.44408 -11.35383 -11.26135 -11.13695 -10.92967 -10.46681 -9.29577 -8.94626 -8.27983 -5.44669 1.57413 1.65738 1.83837 2.64158 3.07975 3.20958 3.52965 3.71219 3.80634 3.90340 3.96388 4.01803 4.20826 4.26938 4.33438 4.37930 4.47927 4.51791 4.55359 4.58558 4.66027 4.69299 4.73835 4.80797 4.86056 4.87949 4.95451 4.99398 5.06152 5.10552 5.14478 5.16654 5.18642 5.24059 5.32900 5.35635 5.40075 5.43025 5.52003 5.57393 5.84299 6.16689 6.36933 6.51535 7.04814 7.75663 8.21578 8.96358 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.038471 B = 0.003940 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.652048 B = 7104.680480 C = 7404.832362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.088 4.088 3 H 0.061 0.939 4 C -0.109 4.109 5 C -0.116 4.116 6 C -0.100 4.100 7 C 0.090 3.910 8 H 0.061 0.939 9 N -0.682 5.682 10 C 0.110 3.890 11 C -0.123 4.123 12 C 0.162 3.838 13 N -0.617 5.617 14 C -0.361 4.361 15 H 0.047 0.953 16 C -0.072 4.072 17 N -0.939 5.939 18 Si 1.117 2.883 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.142 3.858 23 C -0.102 4.102 24 C -0.136 4.136 25 H 0.057 0.943 26 H 0.046 0.954 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.343 0.657 35 H 0.031 0.969 36 H 0.056 0.944 37 H 0.071 0.929 38 H 0.042 0.958 39 H 0.002 0.998 40 H 0.253 0.747 41 H 0.011 0.989 42 H 0.049 0.951 43 H 0.051 0.949 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.587 -4.605 -20.546 21.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.107 4.107 3 H 0.080 0.920 4 C -0.146 4.146 5 C -0.154 4.154 6 C -0.138 4.138 7 C -0.020 4.020 8 H 0.079 0.921 9 N -0.312 5.312 10 C 0.001 3.999 11 C -0.162 4.162 12 C 0.036 3.964 13 N -0.342 5.342 14 C -0.491 4.491 15 H 0.064 0.936 16 C -0.269 4.269 17 N -0.580 5.580 18 Si 0.941 3.059 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.202 1.202 22 C 0.016 3.984 23 C -0.141 4.141 24 C -0.176 4.176 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.162 0.838 35 H 0.049 0.951 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.061 0.939 39 H 0.020 0.980 40 H 0.062 0.938 41 H 0.029 0.971 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.862 -4.939 -19.107 20.325 hybrid contribution -1.022 0.924 -0.924 1.659 sum -5.884 -4.015 -20.031 21.260 Atomic orbital electron populations 1.21814 0.94712 1.02017 1.01738 1.21074 0.95872 0.99168 0.94614 0.92017 1.21574 0.95265 1.00752 0.97050 1.21527 0.95761 1.00652 0.97501 1.21438 1.00332 0.99244 0.92763 1.21638 0.92576 0.97449 0.90358 0.92057 1.60641 1.56931 1.09966 1.03646 1.21155 0.96042 0.93447 0.89276 1.22088 1.01111 0.98170 0.94862 1.20722 0.86928 0.92148 0.96627 1.44351 1.22457 1.55245 1.12097 1.20209 0.89726 1.51694 0.87428 0.93555 1.27280 1.00014 0.99068 1.00511 1.70881 1.11378 1.40617 1.35169 0.82854 0.73576 0.76488 0.72996 1.20788 1.21336 1.20198 1.21148 0.97904 0.92896 0.86413 1.21871 0.97062 0.98051 0.97139 1.22261 0.96278 1.01066 0.97944 0.92372 0.93513 0.91734 0.91044 0.91664 0.92334 0.90677 0.92313 0.91809 0.83785 0.95058 0.92471 0.91058 0.93920 0.98030 0.93770 0.97087 0.93211 0.92969 0.91352 0.91354 0.93801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.19 71.98 0.66 -1.58 16 2 C -0.09 -1.51 2.72 -10.79 -0.03 -1.54 16 3 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 4 C -0.11 -1.57 5.20 30.60 0.16 -1.41 16 5 C -0.12 -1.80 5.92 30.60 0.18 -1.62 16 6 C -0.10 -1.91 5.53 30.60 0.17 -1.74 16 7 C 0.09 2.03 2.27 44.91 0.10 2.13 16 8 H 0.06 1.57 7.36 -2.39 -0.02 1.55 16 9 N -0.68 -18.34 6.07 -469.33 -2.85 -21.19 16 10 C 0.11 3.68 2.25 44.94 0.10 3.78 16 11 C -0.12 -4.64 5.33 30.67 0.16 -4.48 16 12 C 0.16 7.88 4.74 86.36 0.41 8.29 16 13 N -0.62 -32.31 2.80 -698.27 -1.96 -34.27 16 14 C -0.36 -20.96 9.45 84.03 0.79 -20.17 16 15 H 0.05 2.71 7.95 -2.91 -0.02 2.68 16 16 C -0.07 -4.20 4.65 84.86 0.39 -3.80 16 17 N -0.94 -58.35 12.55 21.65 0.27 -58.07 16 18 Si 1.12 51.91 29.99 68.60 2.06 53.97 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 20 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 21 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 22 C 0.14 6.29 6.54 86.51 0.57 6.86 16 23 C -0.10 -3.70 5.62 30.82 0.17 -3.52 16 24 C -0.14 -2.78 4.44 30.59 0.14 -2.65 16 25 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.93 16 31 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.06 1.17 8.14 -2.38 -0.02 1.16 16 34 H 0.34 8.53 8.01 -89.69 -0.72 7.82 16 35 H 0.03 1.09 7.19 -2.38 -0.02 1.07 16 36 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.07 2.33 8.10 -2.38 -0.02 2.31 16 38 H 0.04 2.33 6.51 -2.39 -0.02 2.32 16 39 H 0.00 0.09 7.87 -2.38 -0.02 0.07 16 40 H 0.25 16.06 6.82 -92.71 -0.63 15.43 16 41 H 0.01 0.49 8.14 -2.39 -0.02 0.48 16 42 H 0.05 2.21 7.93 -2.39 -0.02 2.19 16 43 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.07 2.19 7.68 -2.39 -0.02 2.17 16 45 H 0.07 1.31 8.13 -2.39 -0.02 1.29 16 46 H 0.04 1.04 7.55 -2.38 -0.02 1.02 16 Total: -1.00 -64.29 343.54 1.83 -62.45 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 0.33 Total: 18.55 kcal Atomic # 6 Polarization: -25.42 SS G_CDS: 3.98 Total: -21.44 kcal Atomic # 7 Polarization: -109.00 SS G_CDS: -4.54 Total: -113.54 kcal Atomic # 14 Polarization: 51.91 SS G_CDS: 2.06 Total: 53.97 kcal Total: -64.29 1.83 -62.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610270914.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.491 kcal (2) G-P(sol) polarization free energy of solvation -64.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds