Wall clock time and date at job start Mon Mar 30 2020 01:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46967 * 2 1 4 4 C 1.52999 * 109.47087 * 119.99224 * 2 1 3 5 5 C 1.53000 * 109.47087 * 179.97438 * 4 2 1 6 6 C 1.52993 * 109.47391 * 300.00211 * 5 4 2 7 7 C 1.52999 * 109.47177 * 59.99844 * 6 5 4 8 8 C 1.52993 * 109.47391 * 239.99435 * 2 1 3 9 9 H 1.09003 * 109.46798 * 300.00301 * 8 2 1 10 10 N 1.46910 * 109.47010 * 59.99621 * 8 2 1 11 11 C 1.46894 * 110.99976 * 205.36501 * 10 8 2 12 12 C 1.53051 * 109.46029 * 249.80942 * 11 10 8 13 13 C 1.53191 * 109.31219 * 178.61362 * 12 11 10 14 14 N 1.46924 * 108.77299 * 54.63567 * 13 12 11 15 15 C 1.36940 * 120.63235 * 126.41488 * 14 13 12 16 16 H 1.08002 * 119.99934 * 209.04621 * 15 14 13 17 17 C 1.38810 * 119.99741 * 29.03532 * 15 14 13 18 18 N 1.31617 * 120.00286 * 16.01190 * 17 15 14 19 19 Si 1.86807 * 119.99918 * 196.01480 * 17 15 14 20 20 H 1.48494 * 109.47350 * 59.99974 * 19 17 15 21 21 H 1.48505 * 109.47059 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.46744 * 299.99926 * 19 17 15 23 23 C 1.46933 * 118.74013 * 306.38732 * 14 13 12 24 24 C 1.53034 * 109.46325 * 129.74287 * 11 10 8 25 25 H 1.08999 * 109.47211 * 300.00768 * 1 2 3 26 26 H 1.08994 * 109.47395 * 60.00487 * 1 2 3 27 27 H 1.08997 * 109.46966 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47101 * 300.00075 * 4 2 1 29 29 H 1.08997 * 109.47017 * 60.00276 * 4 2 1 30 30 H 1.08997 * 109.46966 * 60.00245 * 5 4 2 31 31 H 1.09000 * 109.46805 * 179.97438 * 5 4 2 32 32 H 1.09000 * 109.47586 * 179.97438 * 6 5 4 33 33 H 1.09003 * 109.46798 * 300.00301 * 6 5 4 34 34 H 1.08997 * 109.47017 * 60.00066 * 7 6 5 35 35 H 1.08999 * 109.47101 * 180.02562 * 7 6 5 36 36 H 1.00900 * 110.99388 * 81.41203 * 10 8 2 37 37 H 1.09004 * 109.46287 * 9.76841 * 11 10 8 38 38 H 1.08999 * 109.49558 * 298.56981 * 12 11 10 39 39 H 1.09003 * 109.49374 * 58.66359 * 12 11 10 40 40 H 1.08999 * 109.58765 * 294.84755 * 13 12 11 41 41 H 1.09004 * 109.58538 * 174.42031 * 13 12 11 42 42 H 0.97002 * 120.00364 * 179.97438 * 18 17 15 43 43 H 1.08994 * 109.58324 * 293.82034 * 23 14 13 44 44 H 1.09002 * 109.58441 * 173.39465 * 23 14 13 45 45 H 1.09009 * 109.49354 * 301.33682 * 24 11 10 46 46 H 1.09006 * 109.49669 * 61.39576 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5700 -0.7216 1.2490 6 6 4.0795 -1.4433 -0.0001 7 6 3.5695 -0.7223 -1.2494 8 6 2.0400 -0.7213 -1.2491 9 1 1.6767 -1.7490 -1.2490 10 7 1.5503 -0.0290 -2.4487 11 6 1.4794 -0.9462 -3.5938 12 6 2.5589 -0.5740 -4.6129 13 6 2.5045 -1.5537 -5.7893 14 7 1.1395 -1.5646 -6.3329 15 6 0.9172 -1.3391 -7.6652 16 1 -0.0107 -0.8917 -7.9897 17 6 1.8845 -1.6856 -8.5985 18 7 2.8609 -2.5017 -8.2625 19 14 1.8005 -0.9934 -10.3316 20 1 1.8697 0.4889 -10.2765 21 1 2.9408 -1.5134 -11.1281 22 1 0.5237 -1.4060 -10.9680 23 6 0.0175 -1.8225 -5.4199 24 6 0.0999 -0.8398 -4.2477 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.6766 -0.2071 2.1392 29 1 1.6767 -1.7487 1.2494 30 1 3.9337 0.3059 1.2487 31 1 3.9333 -1.2350 2.1393 32 1 5.1695 -1.4434 -0.0006 33 1 3.7157 -2.4709 0.0003 34 1 3.9332 0.3053 -1.2497 35 1 3.9321 -1.2367 -2.1393 36 1 2.1239 0.7730 -2.6627 37 1 1.6409 -1.9683 -3.2511 38 1 2.3836 0.4392 -4.9748 39 1 3.5395 -0.6274 -4.1400 40 1 2.7685 -2.5535 -5.4447 41 1 3.2033 -1.2351 -6.5628 42 1 3.5367 -2.7440 -8.9148 43 1 0.0788 -2.8442 -5.0453 44 1 -0.9246 -1.6812 -5.9497 45 1 -0.6698 -1.0824 -3.5148 46 1 -0.0525 0.1761 -4.6125 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610813392.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:26 Heat of formation + Delta-G solvation = -10.675842 kcal Electronic energy + Delta-G solvation = -21542.618657 eV Core-core repulsion = 18659.003795 eV Total energy + Delta-G solvation = -2883.614862 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.40353 -37.43419 -34.55200 -32.60373 -32.07034 -30.16465 -29.67617 -28.00667 -25.90121 -24.44347 -22.39395 -21.96908 -21.25486 -21.00856 -20.04475 -18.84989 -16.77766 -15.59401 -15.07602 -14.73138 -14.55822 -14.27741 -13.93928 -13.70667 -13.46592 -13.31891 -13.11418 -12.84893 -12.47591 -12.23993 -11.94287 -11.86098 -11.50522 -11.29263 -11.15133 -11.02921 -10.87491 -10.72992 -10.66761 -10.53875 -10.46218 -10.30005 -10.19846 -10.03155 -9.92692 -9.53801 -9.35244 -8.45453 -7.92745 -6.60748 -5.75301 -3.18422 3.40405 3.45695 3.47380 4.35251 4.52836 4.63418 4.72593 4.93629 5.10625 5.14896 5.37106 5.42032 5.43411 5.46798 5.49552 5.52392 5.61819 5.68685 5.75715 5.80669 5.92941 5.97381 6.00447 6.03032 6.04934 6.13786 6.19763 6.23726 6.29994 6.39912 6.43488 6.53202 6.59590 6.64927 6.69779 6.72908 6.90644 7.09314 7.39060 7.51244 7.66217 7.77209 7.83351 8.49983 9.25720 9.89290 10.46973 11.33202 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.036121 B = 0.004244 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.986907 B = 6595.360973 C = 7070.049497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.078 4.078 3 H 0.065 0.935 4 C -0.115 4.115 5 C -0.119 4.119 6 C -0.116 4.116 7 C -0.150 4.150 8 C 0.095 3.905 9 H 0.073 0.927 10 N -0.683 5.683 11 C 0.097 3.903 12 C -0.159 4.159 13 C 0.176 3.824 14 N -0.592 5.592 15 C -0.251 4.251 16 H 0.064 0.936 17 C 0.002 3.998 18 N -0.905 5.905 19 Si 0.902 3.098 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.283 1.283 23 C 0.144 3.856 24 C -0.114 4.114 25 H 0.041 0.959 26 H 0.070 0.930 27 H 0.046 0.954 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.337 0.663 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.044 0.956 40 H 0.015 0.985 41 H 0.085 0.915 42 H 0.253 0.747 43 H 0.014 0.986 44 H 0.053 0.947 45 H 0.051 0.949 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.331 4.021 17.956 18.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.097 4.097 3 H 0.083 0.917 4 C -0.153 4.153 5 C -0.157 4.157 6 C -0.154 4.154 7 C -0.189 4.189 8 C -0.015 4.015 9 H 0.091 0.909 10 N -0.311 5.311 11 C -0.012 4.012 12 C -0.200 4.200 13 C 0.049 3.951 14 N -0.315 5.315 15 C -0.381 4.381 16 H 0.082 0.918 17 C -0.196 4.196 18 N -0.550 5.550 19 Si 0.732 3.268 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.209 1.209 23 C 0.017 3.983 24 C -0.154 4.154 25 H 0.060 0.940 26 H 0.089 0.911 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.155 0.845 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.033 0.967 41 H 0.103 0.897 42 H 0.063 0.937 43 H 0.032 0.968 44 H 0.071 0.929 45 H 0.069 0.931 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.226 3.874 17.988 18.402 hybrid contribution 1.114 0.178 -1.138 1.602 sum 0.888 4.052 16.850 17.353 Atomic orbital electron populations 1.21683 0.94785 1.01383 1.01517 1.21067 0.96143 0.99130 0.93342 0.91685 1.21616 0.95206 1.00761 0.97692 1.21537 0.95959 1.00548 0.97606 1.21475 0.99966 0.99432 0.94521 1.22340 0.97557 1.00788 0.98227 1.21687 0.91646 0.97691 0.90512 0.90877 1.60723 1.56391 1.10009 1.04021 1.21530 0.96101 0.94521 0.89037 1.22790 0.96417 1.01923 0.98846 1.20680 0.87838 0.93929 0.92623 1.44033 1.00723 1.82425 1.04292 1.19162 1.03446 1.33457 0.82047 0.91816 1.25061 0.99239 0.97571 0.97748 1.70015 1.15958 1.34543 1.34438 0.86376 0.77094 0.78890 0.84443 1.21052 1.21669 1.20875 1.20951 0.92058 0.94678 0.90637 1.21988 0.95369 1.00782 0.97273 0.94026 0.91065 0.93478 0.92205 0.92122 0.92223 0.92396 0.92346 0.92079 0.92104 0.91675 0.84537 0.92501 0.92392 0.93752 0.96688 0.89705 0.93666 0.96818 0.92857 0.93079 0.92419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.04 37.16 0.34 -1.17 16 2 C -0.08 -0.84 2.43 -90.62 -0.22 -1.06 16 3 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 4 C -0.11 -1.08 5.20 -26.73 -0.14 -1.22 16 5 C -0.12 -1.07 5.92 -26.73 -0.16 -1.23 16 6 C -0.12 -1.17 5.92 -26.74 -0.16 -1.33 16 7 C -0.15 -1.74 5.17 -26.76 -0.14 -1.88 16 8 C 0.10 1.17 1.82 -67.74 -0.12 1.04 16 9 H 0.07 1.00 7.39 -51.93 -0.38 0.61 16 10 N -0.68 -9.59 5.38 -99.72 -0.54 -10.13 16 11 C 0.10 1.65 2.46 -67.67 -0.17 1.48 16 12 C -0.16 -3.03 5.20 -26.61 -0.14 -3.17 16 13 C 0.18 4.24 5.29 -3.71 -0.02 4.22 16 14 N -0.59 -15.10 2.99 -172.32 -0.52 -15.61 16 15 C -0.25 -7.02 9.58 -15.06 -0.14 -7.17 16 16 H 0.06 1.75 7.88 -52.49 -0.41 1.34 16 17 C 0.00 0.06 4.93 -17.43 -0.09 -0.02 16 18 N -0.90 -26.56 11.20 55.49 0.62 -25.94 16 19 Si 0.90 21.92 29.58 -169.99 -5.03 16.89 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 C 0.14 3.11 6.52 -3.71 -0.02 3.08 16 24 C -0.11 -2.08 5.69 -26.62 -0.15 -2.23 16 25 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.89 7.60 -51.93 -0.39 0.49 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 35 H 0.06 0.86 7.05 -51.93 -0.37 0.49 16 36 H 0.34 4.65 7.89 -39.29 -0.31 4.34 16 37 H 0.06 1.02 7.16 -51.93 -0.37 0.65 16 38 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.04 0.77 7.12 -51.93 -0.37 0.40 16 40 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 2.29 6.10 -51.93 -0.32 1.98 16 42 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 43 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.05 1.13 7.93 -51.93 -0.41 0.72 16 45 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 46 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 342.21 15.07 5.16 5.16 Total: -1.00 -28.37 342.21 -10.45 -38.82 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -8.81 Total: 1.45 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: -1.33 Total: -10.64 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: -0.43 Total: -51.68 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.03 Total: 16.89 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.37 -10.45 -38.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610813392.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.145 kcal (2) G-P(sol) polarization free energy of solvation -28.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds