Wall clock time and date at job start Mon Mar 30 2020 01:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46967 * 2 1 4 4 C 1.52999 * 109.47087 * 119.99224 * 2 1 3 5 5 C 1.53000 * 109.47087 * 179.97438 * 4 2 1 6 6 C 1.52993 * 109.47391 * 300.00211 * 5 4 2 7 7 C 1.52999 * 109.47177 * 59.99844 * 6 5 4 8 8 C 1.52993 * 109.47391 * 239.99435 * 2 1 3 9 9 H 1.09003 * 109.46798 * 300.00301 * 8 2 1 10 10 N 1.46910 * 109.47010 * 59.99621 * 8 2 1 11 11 C 1.46894 * 110.99976 * 205.36501 * 10 8 2 12 12 C 1.53051 * 109.46029 * 249.80942 * 11 10 8 13 13 C 1.53191 * 109.31219 * 178.61362 * 12 11 10 14 14 N 1.46924 * 108.77299 * 54.63567 * 13 12 11 15 15 C 1.36940 * 120.63235 * 126.41488 * 14 13 12 16 16 H 1.08002 * 119.99934 * 209.04621 * 15 14 13 17 17 C 1.38810 * 119.99741 * 29.03532 * 15 14 13 18 18 N 1.31617 * 120.00286 * 16.01190 * 17 15 14 19 19 Si 1.86807 * 119.99918 * 196.01480 * 17 15 14 20 20 H 1.48494 * 109.47350 * 59.99974 * 19 17 15 21 21 H 1.48505 * 109.47059 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.46744 * 299.99926 * 19 17 15 23 23 C 1.46933 * 118.74013 * 306.38732 * 14 13 12 24 24 C 1.53034 * 109.46325 * 129.74287 * 11 10 8 25 25 H 1.08999 * 109.47211 * 300.00768 * 1 2 3 26 26 H 1.08994 * 109.47395 * 60.00487 * 1 2 3 27 27 H 1.08997 * 109.46966 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47101 * 300.00075 * 4 2 1 29 29 H 1.08997 * 109.47017 * 60.00276 * 4 2 1 30 30 H 1.08997 * 109.46966 * 60.00245 * 5 4 2 31 31 H 1.09000 * 109.46805 * 179.97438 * 5 4 2 32 32 H 1.09000 * 109.47586 * 179.97438 * 6 5 4 33 33 H 1.09003 * 109.46798 * 300.00301 * 6 5 4 34 34 H 1.08997 * 109.47017 * 60.00066 * 7 6 5 35 35 H 1.08999 * 109.47101 * 180.02562 * 7 6 5 36 36 H 1.00900 * 110.99388 * 81.41203 * 10 8 2 37 37 H 1.09004 * 109.46287 * 9.76841 * 11 10 8 38 38 H 1.08999 * 109.49558 * 298.56981 * 12 11 10 39 39 H 1.09003 * 109.49374 * 58.66359 * 12 11 10 40 40 H 1.08999 * 109.58765 * 294.84755 * 13 12 11 41 41 H 1.09004 * 109.58538 * 174.42031 * 13 12 11 42 42 H 0.97002 * 120.00364 * 179.97438 * 18 17 15 43 43 H 1.08994 * 109.58324 * 293.82034 * 23 14 13 44 44 H 1.09002 * 109.58441 * 173.39465 * 23 14 13 45 45 H 1.09009 * 109.49354 * 301.33682 * 24 11 10 46 46 H 1.09006 * 109.49669 * 61.39576 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5700 -0.7216 1.2490 6 6 4.0795 -1.4433 -0.0001 7 6 3.5695 -0.7223 -1.2494 8 6 2.0400 -0.7213 -1.2491 9 1 1.6767 -1.7490 -1.2490 10 7 1.5503 -0.0290 -2.4487 11 6 1.4794 -0.9462 -3.5938 12 6 2.5589 -0.5740 -4.6129 13 6 2.5045 -1.5537 -5.7893 14 7 1.1395 -1.5646 -6.3329 15 6 0.9172 -1.3391 -7.6652 16 1 -0.0107 -0.8917 -7.9897 17 6 1.8845 -1.6856 -8.5985 18 7 2.8609 -2.5017 -8.2625 19 14 1.8005 -0.9934 -10.3316 20 1 1.8697 0.4889 -10.2765 21 1 2.9408 -1.5134 -11.1281 22 1 0.5237 -1.4060 -10.9680 23 6 0.0175 -1.8225 -5.4199 24 6 0.0999 -0.8398 -4.2477 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.6766 -0.2071 2.1392 29 1 1.6767 -1.7487 1.2494 30 1 3.9337 0.3059 1.2487 31 1 3.9333 -1.2350 2.1393 32 1 5.1695 -1.4434 -0.0006 33 1 3.7157 -2.4709 0.0003 34 1 3.9332 0.3053 -1.2497 35 1 3.9321 -1.2367 -2.1393 36 1 2.1239 0.7730 -2.6627 37 1 1.6409 -1.9683 -3.2511 38 1 2.3836 0.4392 -4.9748 39 1 3.5395 -0.6274 -4.1400 40 1 2.7685 -2.5535 -5.4447 41 1 3.2033 -1.2351 -6.5628 42 1 3.5367 -2.7440 -8.9148 43 1 0.0788 -2.8442 -5.0453 44 1 -0.9246 -1.6812 -5.9497 45 1 -0.6698 -1.0824 -3.5148 46 1 -0.0525 0.1761 -4.6125 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610813392.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:25 Heat of formation + Delta-G solvation = -25.861133 kcal Electronic energy + Delta-G solvation = -21543.277141 eV Core-core repulsion = 18659.003795 eV Total energy + Delta-G solvation = -2884.273346 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.47764 -38.93914 -36.06573 -33.94259 -33.34778 -31.71256 -31.39479 -29.25788 -27.03341 -26.12438 -23.88100 -23.45738 -22.56834 -21.93888 -21.22820 -20.26455 -18.72628 -16.89871 -16.63747 -16.24755 -15.53947 -15.41539 -15.31117 -15.14947 -14.85927 -14.79613 -14.36138 -14.16108 -14.03701 -13.49162 -13.13701 -13.06229 -12.83635 -12.69376 -12.56874 -12.42851 -12.40397 -12.14010 -12.02602 -11.97870 -11.82064 -11.71752 -11.47916 -11.36385 -11.27683 -11.04486 -10.72128 -10.55521 -9.16148 -8.67246 -7.88087 -5.35092 1.46033 1.48386 1.55370 2.50741 3.17857 3.30145 3.69148 3.75689 3.88437 4.00394 4.08225 4.18022 4.29799 4.32204 4.43196 4.53614 4.55736 4.60602 4.65881 4.66260 4.71809 4.83642 4.88063 4.94055 4.96624 5.04136 5.13469 5.14739 5.18767 5.22667 5.25514 5.27731 5.34201 5.38868 5.40892 5.45900 5.51874 5.60503 5.63743 5.66153 5.70938 6.26549 6.38887 6.58902 7.14322 7.85444 8.38020 9.17972 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.036121 B = 0.004244 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.986907 B = 6595.360973 C = 7070.049497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.072 4.072 3 H 0.067 0.933 4 C -0.112 4.112 5 C -0.115 4.115 6 C -0.115 4.115 7 C -0.147 4.147 8 C 0.096 3.904 9 H 0.060 0.940 10 N -0.675 5.675 11 C 0.111 3.889 12 C -0.142 4.142 13 C 0.183 3.817 14 N -0.610 5.610 15 C -0.267 4.267 16 H 0.065 0.935 17 C -0.049 4.049 18 N -0.936 5.936 19 Si 0.968 3.032 20 H -0.278 1.278 21 H -0.293 1.293 22 H -0.275 1.275 23 C 0.140 3.860 24 C -0.100 4.100 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.042 0.958 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.045 0.955 36 H 0.341 0.659 37 H 0.049 0.951 38 H 0.053 0.947 39 H 0.061 0.939 40 H -0.008 1.008 41 H 0.050 0.950 42 H 0.250 0.750 43 H 0.009 0.991 44 H 0.053 0.947 45 H 0.072 0.928 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.006 5.218 19.660 20.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.092 4.092 3 H 0.086 0.914 4 C -0.150 4.150 5 C -0.153 4.153 6 C -0.153 4.153 7 C -0.186 4.186 8 C -0.014 4.014 9 H 0.078 0.922 10 N -0.303 5.303 11 C 0.001 3.999 12 C -0.182 4.182 13 C 0.056 3.944 14 N -0.334 5.334 15 C -0.397 4.397 16 H 0.083 0.917 17 C -0.244 4.244 18 N -0.582 5.582 19 Si 0.796 3.204 20 H -0.204 1.204 21 H -0.219 1.219 22 H -0.200 1.200 23 C 0.014 3.986 24 C -0.140 4.140 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.064 0.936 36 H 0.160 0.840 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.010 0.990 41 H 0.069 0.931 42 H 0.059 0.941 43 H 0.027 0.973 44 H 0.071 0.929 45 H 0.090 0.910 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.582 5.083 19.725 20.378 hybrid contribution 1.195 -0.237 -1.631 2.036 sum 0.613 4.847 18.094 18.742 Atomic orbital electron populations 1.21647 0.94880 1.01064 1.01506 1.21027 0.95984 0.99151 0.92991 0.91417 1.21598 0.95464 1.00561 0.97354 1.21520 0.95601 1.00795 0.97369 1.21474 1.00374 0.99129 0.94343 1.22278 0.96916 1.01096 0.98287 1.21723 0.92180 0.97081 0.90388 0.92151 1.60678 1.56885 1.09489 1.03296 1.21265 0.94532 0.94721 0.89392 1.22568 0.98346 0.99907 0.97423 1.20481 0.86771 0.93857 0.93277 1.44301 1.01966 1.82774 1.04326 1.19504 1.03571 1.33160 0.83439 0.91724 1.25832 0.99056 0.97994 1.01568 1.70177 1.16659 1.35896 1.35498 0.85335 0.77055 0.78244 0.79780 1.20371 1.21907 1.20033 1.21093 0.90847 0.95427 0.91240 1.21806 0.96761 0.99184 0.96265 0.92557 0.92562 0.93928 0.90787 0.92396 0.91754 0.91064 0.91730 0.92540 0.91495 0.93647 0.84009 0.93314 0.92797 0.92036 0.99030 0.93110 0.94113 0.97271 0.92862 0.90970 0.92994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.64 9.04 71.98 0.65 -1.99 16 2 C -0.07 -1.38 2.43 -10.80 -0.03 -1.41 16 3 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 4 C -0.11 -1.78 5.20 30.59 0.16 -1.62 16 5 C -0.12 -1.75 5.92 30.59 0.18 -1.57 16 6 C -0.11 -2.10 5.92 30.59 0.18 -1.92 16 7 C -0.15 -3.18 5.17 30.58 0.16 -3.02 16 8 C 0.10 2.21 1.82 44.89 0.08 2.29 16 9 H 0.06 1.57 7.39 -2.39 -0.02 1.55 16 10 N -0.67 -17.87 5.38 -469.41 -2.53 -20.40 16 11 C 0.11 3.67 2.46 44.94 0.11 3.78 16 12 C -0.14 -5.40 5.20 30.68 0.16 -5.24 16 13 C 0.18 9.07 5.29 86.36 0.46 9.52 16 14 N -0.61 -31.71 2.99 -699.10 -2.09 -33.80 16 15 C -0.27 -15.10 9.58 84.03 0.80 -14.30 16 16 H 0.07 3.57 7.88 -2.91 -0.02 3.55 16 17 C -0.05 -2.80 4.93 84.86 0.42 -2.38 16 18 N -0.94 -56.49 11.20 21.65 0.24 -56.24 16 19 Si 0.97 45.56 29.58 68.60 2.03 47.59 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 21 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 22 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 23 C 0.14 6.06 6.52 86.36 0.56 6.63 16 24 C -0.10 -3.55 5.69 30.67 0.17 -3.38 16 25 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.06 1.28 7.60 -2.39 -0.02 1.27 16 27 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.07 1.37 8.13 -2.39 -0.02 1.35 16 35 H 0.04 1.16 7.05 -2.39 -0.02 1.14 16 36 H 0.34 8.77 7.89 -89.69 -0.71 8.06 16 37 H 0.05 1.72 7.16 -2.38 -0.02 1.70 16 38 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.06 2.11 7.12 -2.39 -0.02 2.09 16 40 H -0.01 -0.45 8.14 -2.39 -0.02 -0.46 16 41 H 0.05 2.85 6.10 -2.39 -0.01 2.84 16 42 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 43 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 44 H 0.05 2.27 7.93 -2.39 -0.02 2.25 16 45 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 46 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 Total: -1.00 -61.49 342.21 1.94 -59.56 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.21 Total: 17.92 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: 4.07 Total: -14.62 kcal Atomic # 7 Polarization: -106.07 SS G_CDS: -4.37 Total: -110.45 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -61.49 1.94 -59.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610813392.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.695 kcal (2) G-P(sol) polarization free energy of solvation -61.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds