Wall clock time and date at job start Mon Mar 30 2020 01:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47122 * 2 1 4 4 C 1.52998 * 109.47088 * 240.00402 * 2 1 3 5 5 C 1.53000 * 109.47088 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.47248 * 59.99775 * 5 4 2 7 7 C 1.53001 * 109.47054 * 299.99810 * 6 5 4 8 8 C 1.53001 * 109.47248 * 120.00177 * 2 1 3 9 9 H 1.08997 * 109.47154 * 59.99868 * 8 2 1 10 10 N 1.46906 * 109.46649 * 300.00049 * 8 2 1 11 11 C 1.46907 * 110.99395 * 155.00011 * 10 8 2 12 12 C 1.53035 * 109.45776 * 275.02537 * 11 10 8 13 13 C 1.53201 * 109.30836 * 178.60246 * 12 11 10 14 14 N 1.46927 * 108.76382 * 54.65827 * 13 12 11 15 15 C 1.36933 * 120.63006 * 126.36083 * 14 13 12 16 16 H 1.08004 * 120.00213 * 207.69191 * 15 14 13 17 17 C 1.38812 * 119.99942 * 27.69692 * 15 14 13 18 18 N 1.31614 * 120.00316 * 17.35267 * 17 15 14 19 19 Si 1.86809 * 119.99936 * 197.34983 * 17 15 14 20 20 H 1.48497 * 109.46999 * 89.99895 * 19 17 15 21 21 H 1.48493 * 109.46869 * 210.00370 * 19 17 15 22 22 H 1.48507 * 109.46879 * 330.00223 * 19 17 15 23 23 C 1.46921 * 118.73868 * 306.37877 * 14 13 12 24 24 C 1.53045 * 109.45624 * 154.97066 * 11 10 8 25 25 H 1.08995 * 109.47433 * 299.99757 * 1 2 3 26 26 H 1.08998 * 109.47112 * 60.00034 * 1 2 3 27 27 H 1.08997 * 109.46792 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47343 * 299.99710 * 4 2 1 29 29 H 1.08998 * 109.47500 * 59.99802 * 4 2 1 30 30 H 1.09004 * 109.47617 * 179.97438 * 5 4 2 31 31 H 1.09007 * 109.47122 * 299.99598 * 5 4 2 32 32 H 1.08997 * 109.47154 * 59.99868 * 6 5 4 33 33 H 1.09003 * 109.47259 * 180.02562 * 6 5 4 34 34 H 1.08997 * 109.47188 * 300.00037 * 7 6 5 35 35 H 1.08998 * 109.47294 * 179.97438 * 7 6 5 36 36 H 1.00896 * 110.99632 * 278.94849 * 10 8 2 37 37 H 1.08996 * 109.45742 * 35.00168 * 11 10 8 38 38 H 1.08997 * 109.50095 * 298.56525 * 12 11 10 39 39 H 1.08998 * 109.50058 * 58.66656 * 12 11 10 40 40 H 1.08995 * 109.60000 * 294.87026 * 13 12 11 41 41 H 1.08999 * 109.58240 * 174.43488 * 13 12 11 42 42 H 0.97001 * 120.00586 * 179.97438 * 18 17 15 43 43 H 1.08999 * 109.58908 * 293.82833 * 23 14 13 44 44 H 1.08998 * 109.59168 * 173.39769 * 23 14 13 45 45 H 1.08998 * 109.49878 * 301.33527 * 24 11 10 46 46 H 1.08994 * 109.49311 * 61.43593 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7217 -1.2490 6 6 4.0795 -1.4434 0.0003 7 6 3.5695 -0.7221 1.2495 8 6 2.0400 -0.7213 1.2492 9 1 1.6767 -1.7489 1.2492 10 7 1.5503 -0.0287 2.4487 11 6 1.4875 -0.9439 3.5961 12 6 0.1588 -1.7027 3.5709 13 6 0.1117 -2.6811 4.7488 14 7 0.3578 -1.9368 5.9915 15 6 -0.5194 -2.0197 7.0397 16 1 -0.6118 -1.1967 7.7330 17 6 -1.2898 -3.1615 7.2114 18 7 -0.9548 -4.2792 6.6025 19 14 -2.8023 -3.1118 8.3067 20 1 -3.9881 -2.7344 7.4964 21 1 -3.0207 -4.4510 8.9099 22 1 -2.6001 -2.1104 9.3846 23 6 1.5627 -1.1017 6.0879 24 6 1.5937 -0.1412 4.8948 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6767 -1.7488 -1.2494 29 1 1.6767 -0.2073 -2.1393 30 1 3.9334 -1.2359 -2.1388 31 1 3.9337 0.3059 -1.2487 32 1 3.7158 -2.4709 0.0000 33 1 5.1695 -1.4434 0.0007 34 1 3.9332 0.3054 1.2498 35 1 3.9321 -1.2365 2.1395 36 1 2.1204 0.7766 2.6592 37 1 2.3125 -1.6541 3.5396 38 1 -0.6660 -0.9949 3.6524 39 1 0.0732 -2.2556 2.6354 40 1 0.8799 -3.4438 4.6216 41 1 -0.8702 -3.1522 4.7934 42 1 -1.4930 -5.0772 6.7227 43 1 2.4492 -1.7356 6.0697 44 1 1.5383 -0.5306 7.0160 45 1 2.5296 0.4175 4.9017 46 1 0.7552 0.5517 4.9637 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610813394.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:30 Heat of formation + Delta-G solvation = -10.611538 kcal Electronic energy + Delta-G solvation = -21588.862408 eV Core-core repulsion = 18705.250334 eV Total energy + Delta-G solvation = -2883.612074 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.39597 -37.42347 -34.55618 -32.57920 -32.06383 -30.15295 -29.75711 -27.99428 -25.87752 -24.43916 -22.54987 -22.06120 -21.23861 -20.80602 -19.79984 -18.92974 -16.68726 -15.60094 -15.26877 -14.67191 -14.55673 -14.27265 -14.00606 -13.77842 -13.44509 -13.36269 -13.06256 -12.89446 -12.36104 -12.20875 -11.96336 -11.83838 -11.51616 -11.38948 -11.12848 -11.00402 -10.89877 -10.86271 -10.69248 -10.44126 -10.33952 -10.23133 -10.13428 -9.98759 -9.85824 -9.47247 -9.41465 -8.43232 -7.97594 -6.62921 -5.74198 -3.15961 3.41325 3.48018 3.49082 4.34427 4.53853 4.63662 4.72730 4.92954 5.11409 5.15351 5.38276 5.41868 5.43598 5.47406 5.50312 5.52156 5.56896 5.68413 5.76446 5.84366 5.93025 5.97845 6.00777 6.02162 6.04615 6.14924 6.19066 6.20911 6.31995 6.39135 6.44334 6.52708 6.60962 6.69410 6.74162 6.82360 6.85077 7.04446 7.46402 7.50184 7.71658 7.77030 7.85110 8.50089 9.26408 9.90153 10.46962 11.34355 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.032734 B = 0.004309 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.164004 B = 6495.924101 C = 6709.390692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.076 4.076 3 H 0.064 0.936 4 C -0.116 4.116 5 C -0.118 4.118 6 C -0.116 4.116 7 C -0.148 4.148 8 C 0.093 3.907 9 H 0.077 0.923 10 N -0.681 5.681 11 C 0.097 3.903 12 C -0.122 4.122 13 C 0.170 3.830 14 N -0.591 5.591 15 C -0.251 4.251 16 H 0.065 0.935 17 C 0.002 3.998 18 N -0.904 5.904 19 Si 0.902 3.098 20 H -0.287 1.287 21 H -0.292 1.292 22 H -0.279 1.279 23 C 0.148 3.852 24 C -0.133 4.133 25 H 0.071 0.929 26 H 0.040 0.960 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.331 0.669 37 H 0.034 0.966 38 H 0.059 0.941 39 H 0.043 0.957 40 H 0.013 0.987 41 H 0.087 0.913 42 H 0.253 0.747 43 H 0.014 0.986 44 H 0.054 0.946 45 H 0.045 0.955 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.098 7.759 -14.492 18.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.095 4.095 3 H 0.082 0.918 4 C -0.154 4.154 5 C -0.156 4.156 6 C -0.154 4.154 7 C -0.187 4.187 8 C -0.017 4.017 9 H 0.095 0.905 10 N -0.310 5.310 11 C -0.011 4.011 12 C -0.162 4.162 13 C 0.044 3.956 14 N -0.314 5.314 15 C -0.381 4.381 16 H 0.083 0.917 17 C -0.197 4.197 18 N -0.548 5.548 19 Si 0.732 3.268 20 H -0.214 1.214 21 H -0.218 1.218 22 H -0.205 1.205 23 C 0.021 3.979 24 C -0.172 4.172 25 H 0.090 0.910 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.149 0.851 37 H 0.052 0.948 38 H 0.078 0.922 39 H 0.061 0.939 40 H 0.031 0.969 41 H 0.106 0.894 42 H 0.063 0.937 43 H 0.032 0.968 44 H 0.072 0.928 45 H 0.063 0.937 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.335 7.515 -14.600 17.984 hybrid contribution 0.274 -0.197 0.726 0.801 sum 7.609 7.317 -13.873 17.433 Atomic orbital electron populations 1.21688 0.94642 1.01601 1.01498 1.21045 0.96261 0.98942 0.93238 0.91791 1.21625 0.95106 1.00904 0.97737 1.21536 0.96047 1.00458 0.97562 1.21472 0.99837 0.99553 0.94518 1.22271 0.97763 1.00595 0.98105 1.21602 0.91326 0.98286 0.90495 0.90527 1.60720 1.56496 1.09710 1.04042 1.21455 0.97801 0.93232 0.88648 1.22181 0.96029 0.98981 0.99008 1.20806 1.01555 0.90734 0.82505 1.44054 1.21649 1.53177 1.12543 1.19210 1.14992 0.98327 1.05527 0.91716 1.25018 1.00698 0.94652 0.99288 1.70038 1.38489 0.99608 1.46700 0.86298 0.83573 0.76777 0.80188 1.21441 1.21823 1.20461 1.20851 0.89911 0.92152 0.94988 1.22204 1.00156 0.98849 0.96023 0.91029 0.94055 0.93314 0.92018 0.92164 0.92364 0.92258 0.91972 0.92415 0.92175 0.92104 0.85072 0.94803 0.92228 0.93850 0.96871 0.89440 0.93704 0.96798 0.92786 0.93677 0.91589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.04 37.16 0.34 -1.31 16 2 C -0.08 -0.85 2.43 -90.62 -0.22 -1.07 16 3 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 4 C -0.12 -1.13 5.20 -26.73 -0.14 -1.27 16 5 C -0.12 -1.07 5.92 -26.73 -0.16 -1.23 16 6 C -0.12 -1.15 5.92 -26.73 -0.16 -1.31 16 7 C -0.15 -1.67 5.16 -26.76 -0.14 -1.80 16 8 C 0.09 1.17 1.72 -67.74 -0.12 1.06 16 9 H 0.08 1.11 7.10 -51.93 -0.37 0.75 16 10 N -0.68 -9.63 5.29 -99.72 -0.53 -10.16 16 11 C 0.10 1.67 2.27 -67.67 -0.15 1.52 16 12 C -0.12 -2.44 5.57 -26.61 -0.15 -2.59 16 13 C 0.17 4.17 5.31 -3.71 -0.02 4.15 16 14 N -0.59 -15.12 2.99 -172.32 -0.52 -15.64 16 15 C -0.25 -7.02 9.58 -15.06 -0.14 -7.16 16 16 H 0.07 1.78 7.89 -52.48 -0.41 1.36 16 17 C 0.00 0.05 4.91 -17.43 -0.09 -0.03 16 18 N -0.90 -26.63 11.19 55.49 0.62 -26.01 16 19 Si 0.90 22.00 29.59 -169.99 -5.03 16.97 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 C 0.15 3.16 6.52 -3.71 -0.02 3.14 16 24 C -0.13 -2.34 5.36 -26.61 -0.14 -2.48 16 25 H 0.07 0.98 7.60 -51.93 -0.39 0.58 16 26 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 35 H 0.06 0.76 7.42 -51.93 -0.39 0.37 16 36 H 0.33 4.32 8.07 -39.29 -0.32 4.00 16 37 H 0.03 0.61 7.11 -51.93 -0.37 0.24 16 38 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.04 0.82 7.41 -51.93 -0.38 0.43 16 40 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.09 2.40 6.04 -51.93 -0.31 2.09 16 42 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 43 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.05 1.13 7.93 -51.93 -0.41 0.72 16 45 H 0.04 0.68 8.10 -51.93 -0.42 0.26 16 46 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 342.25 15.07 5.16 5.16 Total: -1.00 -28.63 342.25 -10.44 -39.07 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -8.83 Total: 0.99 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: -1.31 Total: -10.39 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: -0.42 Total: -51.80 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.97 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.63 -10.44 -39.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610813394.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.458 kcal (2) G-P(sol) polarization free energy of solvation -28.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds