Wall clock time and date at job start Mon Mar 30 2020 01:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47122 * 2 1 4 4 C 1.52998 * 109.47088 * 240.00402 * 2 1 3 5 5 C 1.53000 * 109.47088 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.47248 * 59.99775 * 5 4 2 7 7 C 1.53001 * 109.47054 * 299.99810 * 6 5 4 8 8 C 1.53001 * 109.47248 * 120.00177 * 2 1 3 9 9 H 1.08997 * 109.47154 * 59.99868 * 8 2 1 10 10 N 1.46906 * 109.46649 * 300.00049 * 8 2 1 11 11 C 1.46907 * 110.99395 * 155.00011 * 10 8 2 12 12 C 1.53035 * 109.45776 * 275.02537 * 11 10 8 13 13 C 1.53201 * 109.30836 * 178.60246 * 12 11 10 14 14 N 1.46927 * 108.76382 * 54.65827 * 13 12 11 15 15 C 1.36933 * 120.63006 * 126.36083 * 14 13 12 16 16 H 1.08004 * 120.00213 * 207.69191 * 15 14 13 17 17 C 1.38812 * 119.99942 * 27.69692 * 15 14 13 18 18 N 1.31614 * 120.00316 * 17.35267 * 17 15 14 19 19 Si 1.86809 * 119.99936 * 197.34983 * 17 15 14 20 20 H 1.48497 * 109.46999 * 89.99895 * 19 17 15 21 21 H 1.48493 * 109.46869 * 210.00370 * 19 17 15 22 22 H 1.48507 * 109.46879 * 330.00223 * 19 17 15 23 23 C 1.46921 * 118.73868 * 306.37877 * 14 13 12 24 24 C 1.53045 * 109.45624 * 154.97066 * 11 10 8 25 25 H 1.08995 * 109.47433 * 299.99757 * 1 2 3 26 26 H 1.08998 * 109.47112 * 60.00034 * 1 2 3 27 27 H 1.08997 * 109.46792 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47343 * 299.99710 * 4 2 1 29 29 H 1.08998 * 109.47500 * 59.99802 * 4 2 1 30 30 H 1.09004 * 109.47617 * 179.97438 * 5 4 2 31 31 H 1.09007 * 109.47122 * 299.99598 * 5 4 2 32 32 H 1.08997 * 109.47154 * 59.99868 * 6 5 4 33 33 H 1.09003 * 109.47259 * 180.02562 * 6 5 4 34 34 H 1.08997 * 109.47188 * 300.00037 * 7 6 5 35 35 H 1.08998 * 109.47294 * 179.97438 * 7 6 5 36 36 H 1.00896 * 110.99632 * 278.94849 * 10 8 2 37 37 H 1.08996 * 109.45742 * 35.00168 * 11 10 8 38 38 H 1.08997 * 109.50095 * 298.56525 * 12 11 10 39 39 H 1.08998 * 109.50058 * 58.66656 * 12 11 10 40 40 H 1.08995 * 109.60000 * 294.87026 * 13 12 11 41 41 H 1.08999 * 109.58240 * 174.43488 * 13 12 11 42 42 H 0.97001 * 120.00586 * 179.97438 * 18 17 15 43 43 H 1.08999 * 109.58908 * 293.82833 * 23 14 13 44 44 H 1.08998 * 109.59168 * 173.39769 * 23 14 13 45 45 H 1.08998 * 109.49878 * 301.33527 * 24 11 10 46 46 H 1.08994 * 109.49311 * 61.43593 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7217 -1.2490 6 6 4.0795 -1.4434 0.0003 7 6 3.5695 -0.7221 1.2495 8 6 2.0400 -0.7213 1.2492 9 1 1.6767 -1.7489 1.2492 10 7 1.5503 -0.0287 2.4487 11 6 1.4875 -0.9439 3.5961 12 6 0.1588 -1.7027 3.5709 13 6 0.1117 -2.6811 4.7488 14 7 0.3578 -1.9368 5.9915 15 6 -0.5194 -2.0197 7.0397 16 1 -0.6118 -1.1967 7.7330 17 6 -1.2898 -3.1615 7.2114 18 7 -0.9548 -4.2792 6.6025 19 14 -2.8023 -3.1118 8.3067 20 1 -3.9881 -2.7344 7.4964 21 1 -3.0207 -4.4510 8.9099 22 1 -2.6001 -2.1104 9.3846 23 6 1.5627 -1.1017 6.0879 24 6 1.5937 -0.1412 4.8948 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6767 -1.7488 -1.2494 29 1 1.6767 -0.2073 -2.1393 30 1 3.9334 -1.2359 -2.1388 31 1 3.9337 0.3059 -1.2487 32 1 3.7158 -2.4709 0.0000 33 1 5.1695 -1.4434 0.0007 34 1 3.9332 0.3054 1.2498 35 1 3.9321 -1.2365 2.1395 36 1 2.1204 0.7766 2.6592 37 1 2.3125 -1.6541 3.5396 38 1 -0.6660 -0.9949 3.6524 39 1 0.0732 -2.2556 2.6354 40 1 0.8799 -3.4438 4.6216 41 1 -0.8702 -3.1522 4.7934 42 1 -1.4930 -5.0772 6.7227 43 1 2.4492 -1.7356 6.0697 44 1 1.5383 -0.5306 7.0160 45 1 2.5296 0.4175 4.9017 46 1 0.7552 0.5517 4.9637 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610813394.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:30 Heat of formation + Delta-G solvation = -26.190856 kcal Electronic energy + Delta-G solvation = -21589.537977 eV Core-core repulsion = 18705.250334 eV Total energy + Delta-G solvation = -2884.287644 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.47881 -38.93911 -36.07282 -33.93958 -33.33101 -31.77621 -31.43352 -29.25640 -27.05226 -26.13487 -24.01964 -23.55909 -22.47077 -21.85458 -20.92593 -20.43847 -18.68677 -16.97357 -16.56755 -16.29906 -15.71818 -15.39862 -15.31753 -15.14563 -14.99522 -14.76058 -14.35312 -14.15605 -13.96656 -13.50706 -13.18374 -13.07150 -12.90897 -12.73934 -12.61330 -12.59396 -12.32960 -12.05802 -12.01615 -11.91957 -11.77878 -11.70451 -11.37252 -11.34758 -11.21947 -11.05949 -10.83682 -10.55126 -9.16746 -8.70564 -7.88023 -5.33213 1.46060 1.48189 1.56690 2.51039 3.16730 3.30374 3.68551 3.75595 3.88082 4.02516 4.06659 4.14157 4.29674 4.31345 4.43930 4.51963 4.55686 4.59365 4.63977 4.66685 4.72609 4.84040 4.88231 4.91789 4.99300 5.03694 5.11232 5.12349 5.13398 5.20866 5.22194 5.25284 5.32996 5.39350 5.40253 5.46161 5.52322 5.58696 5.64030 5.65519 5.75351 6.24687 6.38411 6.65127 7.14032 7.85588 8.37552 9.18693 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.032734 B = 0.004309 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.164004 B = 6495.924101 C = 6709.390692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.070 4.070 3 H 0.073 0.927 4 C -0.114 4.114 5 C -0.114 4.114 6 C -0.116 4.116 7 C -0.143 4.143 8 C 0.094 3.906 9 H 0.053 0.947 10 N -0.677 5.677 11 C 0.111 3.889 12 C -0.106 4.106 13 C 0.179 3.821 14 N -0.610 5.610 15 C -0.264 4.264 16 H 0.067 0.933 17 C -0.051 4.051 18 N -0.937 5.937 19 Si 0.967 3.033 20 H -0.286 1.286 21 H -0.294 1.294 22 H -0.267 1.267 23 C 0.142 3.858 24 C -0.119 4.119 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.035 0.965 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.051 0.949 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.046 0.954 36 H 0.344 0.656 37 H 0.027 0.973 38 H 0.047 0.953 39 H 0.050 0.950 40 H -0.010 1.010 41 H 0.052 0.948 42 H 0.250 0.750 43 H 0.011 0.989 44 H 0.056 0.944 45 H 0.081 0.919 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.009 9.730 -15.647 20.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.089 4.089 3 H 0.091 0.909 4 C -0.152 4.152 5 C -0.152 4.152 6 C -0.154 4.154 7 C -0.182 4.182 8 C -0.016 4.016 9 H 0.071 0.929 10 N -0.307 5.307 11 C 0.001 3.999 12 C -0.145 4.145 13 C 0.053 3.947 14 N -0.334 5.334 15 C -0.394 4.394 16 H 0.085 0.915 17 C -0.246 4.246 18 N -0.583 5.583 19 Si 0.795 3.205 20 H -0.213 1.213 21 H -0.221 1.221 22 H -0.192 1.192 23 C 0.016 3.984 24 C -0.158 4.158 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.065 0.935 36 H 0.163 0.837 37 H 0.045 0.955 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.009 0.991 41 H 0.070 0.930 42 H 0.059 0.941 43 H 0.029 0.971 44 H 0.075 0.925 45 H 0.100 0.900 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.271 9.522 -15.765 20.189 hybrid contribution 0.030 -0.817 1.074 1.350 sum 8.301 8.705 -14.691 18.987 Atomic orbital electron populations 1.21655 0.95425 1.00721 1.01406 1.21008 0.95510 0.99354 0.93037 0.90865 1.21611 0.95827 1.00343 0.97396 1.21517 0.95216 1.01005 0.97436 1.21478 1.00542 0.98966 0.94396 1.22199 0.96356 1.01386 0.98258 1.21614 0.92492 0.97065 0.90407 0.92887 1.60582 1.57390 1.09480 1.03264 1.21145 0.95506 0.93357 0.89897 1.21911 0.97567 0.97945 0.97122 1.20569 0.98679 0.91279 0.84217 1.44317 1.22947 1.53748 1.12352 1.19557 1.15602 0.98322 1.05958 0.91499 1.25798 1.03408 0.94310 1.01095 1.70194 1.39551 1.00110 1.48425 0.85264 0.79855 0.76684 0.78658 1.21262 1.22074 1.19151 1.21031 0.88072 0.92205 0.97053 1.22024 1.01776 0.97806 0.94195 0.92787 0.92458 0.94579 0.92898 0.90795 0.91129 0.91320 0.92983 0.91267 0.90830 0.93493 0.83655 0.95519 0.93400 0.93151 0.99146 0.92999 0.94137 0.97101 0.92505 0.90047 0.92212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 9.04 71.98 0.65 -2.41 16 2 C -0.07 -1.42 2.43 -10.79 -0.03 -1.44 16 3 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 4 C -0.11 -1.95 5.20 30.59 0.16 -1.79 16 5 C -0.11 -1.73 5.92 30.59 0.18 -1.54 16 6 C -0.12 -2.05 5.92 30.59 0.18 -1.87 16 7 C -0.14 -2.91 5.16 30.58 0.16 -2.76 16 8 C 0.09 2.24 1.72 44.90 0.08 2.31 16 9 H 0.05 1.53 7.10 -2.39 -0.02 1.51 16 10 N -0.68 -18.01 5.29 -469.40 -2.48 -20.49 16 11 C 0.11 3.70 2.27 44.94 0.10 3.80 16 12 C -0.11 -4.29 5.57 30.67 0.17 -4.12 16 13 C 0.18 9.10 5.31 86.37 0.46 9.56 16 14 N -0.61 -31.80 2.99 -699.10 -2.09 -33.89 16 15 C -0.26 -14.99 9.58 84.03 0.81 -14.19 16 16 H 0.07 3.69 7.89 -2.91 -0.02 3.66 16 17 C -0.05 -2.92 4.91 84.86 0.42 -2.50 16 18 N -0.94 -57.00 11.19 21.65 0.24 -56.76 16 19 Si 0.97 45.89 29.59 68.60 2.03 47.92 16 20 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 21 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 22 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 23 C 0.14 6.03 6.52 86.36 0.56 6.59 16 24 C -0.12 -3.98 5.36 30.67 0.16 -3.82 16 25 H 0.05 1.41 7.60 -2.39 -0.02 1.39 16 26 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.07 0.92 8.14 -2.38 -0.02 0.91 16 31 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.07 1.32 8.13 -2.39 -0.02 1.30 16 35 H 0.05 1.09 7.42 -2.39 -0.02 1.07 16 36 H 0.34 7.95 8.07 -89.70 -0.72 7.23 16 37 H 0.03 0.95 7.11 -2.39 -0.02 0.93 16 38 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.05 1.94 7.41 -2.39 -0.02 1.92 16 40 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 41 H 0.05 2.99 6.04 -2.39 -0.01 2.97 16 42 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 43 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 44 H 0.06 2.34 7.93 -2.39 -0.02 2.32 16 45 H 0.08 2.18 8.10 -2.39 -0.02 2.16 16 46 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -62.88 342.25 1.95 -60.94 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: 0.19 Total: 16.46 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: 4.06 Total: -14.18 kcal Atomic # 7 Polarization: -106.81 SS G_CDS: -4.33 Total: -111.14 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -62.88 1.95 -60.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610813394.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.744 kcal (2) G-P(sol) polarization free energy of solvation -62.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds