Wall clock time and date at job start Mon Mar 30 2020 01:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50698 * 119.99976 * 2 1 4 4 C 1.53002 * 109.47412 * 124.99935 * 3 2 1 5 5 C 1.52999 * 109.47204 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.47235 * 55.00073 * 5 4 3 7 7 C 1.53005 * 109.46888 * 174.99929 * 5 4 3 8 8 C 1.53001 * 109.46812 * 293.62359 * 7 5 4 9 9 N 1.46898 * 109.47011 * 294.99762 * 5 4 3 10 10 C 1.46897 * 111.00016 * 154.90178 * 9 5 4 11 11 C 1.53042 * 109.45605 * 273.65384 * 10 9 5 12 12 C 1.53194 * 109.31061 * 178.60132 * 11 10 9 13 13 N 1.46925 * 108.76826 * 54.65112 * 12 11 10 14 14 C 1.36938 * 120.63007 * 126.36395 * 13 12 11 15 15 H 1.08001 * 119.99700 * 329.55061 * 14 13 12 16 16 C 1.38812 * 119.99973 * 149.56196 * 14 13 12 17 17 N 1.31618 * 119.99969 * 342.25102 * 16 14 13 18 18 Si 1.86798 * 120.00208 * 162.25993 * 16 14 13 19 19 H 1.48502 * 109.47253 * 89.99276 * 18 16 14 20 20 H 1.48498 * 109.47302 * 209.99619 * 18 16 14 21 21 H 1.48504 * 109.46943 * 329.99532 * 18 16 14 22 22 C 1.46923 * 118.73832 * 306.38586 * 13 12 11 23 23 C 1.53035 * 109.46483 * 153.59758 * 10 9 5 24 24 H 1.07998 * 120.00150 * 0.02562 * 1 2 3 25 25 H 1.08004 * 119.99405 * 179.97438 * 1 2 3 26 26 H 1.08007 * 120.00072 * 179.97438 * 2 1 3 27 27 H 1.08998 * 109.46994 * 4.99534 * 3 2 1 28 28 H 1.09008 * 109.47001 * 245.00061 * 3 2 1 29 29 H 1.08998 * 109.46881 * 59.99620 * 4 3 2 30 30 H 1.08997 * 109.46750 * 300.00314 * 4 3 2 31 31 H 1.08995 * 109.46745 * 173.62173 * 7 5 4 32 32 H 1.08995 * 109.47289 * 53.62132 * 7 5 4 33 33 H 1.08998 * 109.47293 * 304.00417 * 8 7 5 34 34 H 1.09006 * 109.46494 * 184.00599 * 8 7 5 35 35 H 1.09000 * 109.47368 * 64.00697 * 8 7 5 36 36 H 1.00903 * 111.00012 * 278.85662 * 9 5 4 37 37 H 1.09001 * 109.45996 * 33.62353 * 10 9 5 38 38 H 1.08997 * 109.49966 * 298.55889 * 11 10 9 39 39 H 1.08993 * 109.50586 * 58.66271 * 11 10 9 40 40 H 1.08997 * 109.59668 * 294.86428 * 12 11 10 41 41 H 1.08999 * 109.70271 * 174.50577 * 12 11 10 42 42 H 0.96996 * 120.00084 * 180.02562 * 17 16 14 43 43 H 1.08997 * 109.58835 * 293.81727 * 22 13 12 44 44 H 1.09000 * 109.70682 * 173.46218 * 22 13 12 45 45 H 1.08998 * 109.49685 * 301.33698 * 23 10 9 46 46 H 1.09006 * 109.49688 * 61.39967 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 6 3.7995 2.6584 1.1820 6 1 3.0909 3.4867 1.1822 7 6 4.6791 2.7395 2.4313 8 6 3.7919 2.8180 3.6753 9 7 4.6441 2.7368 -0.0174 10 6 4.9161 4.1343 -0.3793 11 6 3.7826 4.6624 -1.2616 12 6 4.0521 6.1301 -1.6081 13 7 5.3867 6.2355 -2.2134 14 6 5.5554 6.8421 -3.4294 15 1 4.7640 6.8092 -4.1636 16 6 6.7435 7.4992 -3.7184 17 7 7.5572 7.8467 -2.7440 18 14 7.1874 7.8904 -5.4902 19 1 6.6496 9.2265 -5.8518 20 1 8.6647 7.8940 -5.6411 21 1 6.6008 6.8616 -6.3862 22 6 6.5368 5.6772 -1.4894 23 6 6.2393 4.2147 -1.1439 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5399 -0.9354 -0.0004 26 1 1.8500 -0.9354 0.0004 27 1 1.3585 2.1316 0.0895 28 1 2.6213 1.4026 -0.9315 29 1 3.7399 0.5066 1.0921 30 1 2.4772 1.2356 2.1130 31 1 5.3073 3.6285 2.3762 32 1 5.3095 1.8522 2.4900 33 1 3.1120 3.6649 3.5838 34 1 4.4165 2.9472 4.5593 35 1 3.2155 1.8977 3.7692 36 1 5.5028 2.2227 0.1107 37 1 4.9827 4.7375 0.5261 38 1 3.7316 4.0754 -2.1786 39 1 2.8370 4.5832 -0.7253 40 1 4.0137 6.7329 -0.7009 41 1 3.3014 6.4847 -2.3144 42 1 8.3872 8.3062 -2.9459 43 1 6.7011 6.2432 -0.5724 44 1 7.4269 5.7308 -2.1162 45 1 7.0426 3.8168 -0.5238 46 1 6.1652 3.6314 -2.0618 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610813478.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:58 Heat of formation + Delta-G solvation = 14.277562 kcal Electronic energy + Delta-G solvation = -21073.720408 eV Core-core repulsion = 18191.187606 eV Total energy + Delta-G solvation = -2882.532802 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -38.70122 -36.79846 -34.88204 -33.35958 -31.49549 -30.43092 -29.76631 -28.72805 -25.51054 -24.13646 -22.87928 -22.24750 -21.34249 -20.15372 -19.65384 -19.00074 -16.72048 -15.77059 -15.37026 -14.76928 -14.67097 -14.49668 -14.07076 -13.86967 -13.46262 -13.43045 -13.03759 -12.80606 -12.47106 -12.33285 -12.01932 -11.66026 -11.57092 -11.53240 -11.31216 -11.03654 -11.01773 -10.75356 -10.65619 -10.54572 -10.38056 -10.28831 -10.13517 -9.89716 -9.55858 -9.37865 -9.33293 -8.43484 -8.03112 -6.59701 -5.76373 -3.19254 2.25426 3.39445 3.46469 3.49754 4.40490 4.53164 4.66594 4.91638 5.00293 5.09240 5.27239 5.31145 5.39084 5.47479 5.48234 5.51648 5.60808 5.70579 5.73870 5.80479 5.81492 5.90416 5.93492 6.00710 6.09317 6.16587 6.22286 6.30879 6.36837 6.39905 6.56519 6.61618 6.62682 6.69057 6.71181 6.78597 6.88776 7.09981 7.38147 7.45295 7.65169 7.73084 7.84336 8.50111 9.25175 9.88686 10.47509 11.32497 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.024689 B = 0.004209 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.825479 B = 6650.796064 C = 7354.139116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.145 4.145 3 C -0.089 4.089 4 C -0.099 4.099 5 C 0.086 3.914 6 H 0.076 0.924 7 C -0.154 4.154 8 C -0.148 4.148 9 N -0.682 5.682 10 C 0.097 3.903 11 C -0.115 4.115 12 C 0.144 3.856 13 N -0.590 5.590 14 C -0.253 4.253 15 H 0.063 0.937 16 C 0.004 3.996 17 N -0.902 5.902 18 Si 0.900 3.100 19 H -0.287 1.287 20 H -0.290 1.290 21 H -0.279 1.279 22 C 0.177 3.823 23 C -0.141 4.141 24 H 0.094 0.906 25 H 0.091 0.909 26 H 0.103 0.897 27 H 0.060 0.940 28 H 0.088 0.912 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.050 0.950 35 H 0.055 0.945 36 H 0.335 0.665 37 H 0.035 0.965 38 H 0.062 0.938 39 H 0.044 0.956 40 H 0.013 0.987 41 H 0.053 0.947 42 H 0.253 0.747 43 H 0.016 0.984 44 H 0.081 0.919 45 H 0.043 0.957 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.273 -13.420 10.000 18.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.163 4.163 3 C -0.126 4.126 4 C -0.137 4.137 5 C -0.024 4.024 6 H 0.094 0.906 7 C -0.193 4.193 8 C -0.206 4.206 9 N -0.311 5.311 10 C -0.012 4.012 11 C -0.155 4.155 12 C 0.017 3.983 13 N -0.313 5.313 14 C -0.383 4.383 15 H 0.081 0.919 16 C -0.195 4.195 17 N -0.546 5.546 18 Si 0.729 3.271 19 H -0.214 1.214 20 H -0.216 1.216 21 H -0.204 1.204 22 C 0.050 3.950 23 C -0.181 4.181 24 H 0.112 0.888 25 H 0.109 0.891 26 H 0.121 0.879 27 H 0.078 0.922 28 H 0.107 0.893 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.153 0.847 37 H 0.053 0.947 38 H 0.081 0.919 39 H 0.063 0.937 40 H 0.031 0.969 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.034 0.966 44 H 0.099 0.901 45 H 0.062 0.938 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.643 -13.377 9.527 18.558 hybrid contribution 0.980 0.460 -0.099 1.087 sum -7.663 -12.917 9.427 17.733 Atomic orbital electron populations 1.23793 0.96079 1.01439 1.03219 1.23114 0.95976 0.99018 0.98184 1.20704 0.97650 0.93961 1.00305 1.21525 0.97467 0.97087 0.97621 1.21681 0.95064 0.97998 0.87685 0.90585 1.22265 0.99062 1.01948 0.96066 1.21755 0.99766 1.01766 0.97346 1.60723 1.21635 1.13908 1.34871 1.21441 0.96207 0.86908 0.96610 1.21993 0.95980 0.98385 0.99112 1.20932 0.88924 0.92502 0.95898 1.44005 1.01279 1.65607 1.20438 1.19151 1.01513 1.27375 0.90239 0.91890 1.25081 0.99478 0.97603 0.97305 1.70047 1.12710 1.41886 1.29972 0.86345 0.77407 0.78233 0.85082 1.21395 1.21591 1.20420 1.20648 0.91902 0.87014 0.95403 1.22397 0.94429 1.01828 0.99424 0.88760 0.89063 0.87866 0.92171 0.89326 0.92195 0.92132 0.91945 0.92067 0.92732 0.93111 0.92570 0.84708 0.94654 0.91885 0.93692 0.96935 0.92827 0.93712 0.96631 0.90075 0.93786 0.91901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.99 14.32 29.02 0.42 -1.57 16 2 C -0.14 -1.47 9.52 -36.03 -0.34 -1.81 16 3 C -0.09 -0.99 5.54 -27.88 -0.15 -1.14 16 4 C -0.10 -1.03 4.76 -26.73 -0.13 -1.15 16 5 C 0.09 1.01 1.85 -67.71 -0.13 0.88 16 6 H 0.08 0.99 7.21 -51.93 -0.37 0.62 16 7 C -0.15 -1.67 5.36 -26.73 -0.14 -1.81 16 8 C -0.15 -1.40 9.60 37.16 0.36 -1.05 16 9 N -0.68 -9.31 5.52 -99.70 -0.55 -9.86 16 10 C 0.10 1.63 2.24 -67.67 -0.15 1.48 16 11 C -0.11 -2.07 5.58 -26.61 -0.15 -2.22 16 12 C 0.14 3.11 6.52 -3.71 -0.02 3.09 16 13 N -0.59 -15.03 2.98 -172.33 -0.51 -15.54 16 14 C -0.25 -7.06 9.55 -15.06 -0.14 -7.21 16 15 H 0.06 1.73 7.89 -52.49 -0.41 1.32 16 16 C 0.00 0.11 4.87 -17.43 -0.08 0.03 16 17 N -0.90 -26.46 11.43 55.49 0.63 -25.83 16 18 Si 0.90 21.86 29.59 -169.99 -5.03 16.83 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 C 0.18 4.24 5.29 -3.71 -0.02 4.22 16 23 C -0.14 -2.68 5.35 -26.61 -0.14 -2.82 16 24 H 0.09 0.88 7.84 -52.49 -0.41 0.47 16 25 H 0.09 0.75 8.06 -52.48 -0.42 0.33 16 26 H 0.10 0.96 8.06 -52.48 -0.42 0.54 16 27 H 0.06 0.69 7.79 -51.93 -0.40 0.28 16 28 H 0.09 1.14 7.75 -51.92 -0.40 0.74 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.58 6.48 -51.93 -0.34 0.25 16 31 H 0.06 0.77 7.39 -51.93 -0.38 0.38 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.48 6.69 -51.93 -0.35 0.14 16 36 H 0.33 4.36 8.06 -39.29 -0.32 4.04 16 37 H 0.04 0.63 7.11 -51.93 -0.37 0.26 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.04 0.73 7.52 -51.93 -0.39 0.34 16 40 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.05 1.14 7.93 -51.93 -0.41 0.73 16 42 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.08 2.17 6.28 -51.93 -0.33 1.84 16 45 H 0.04 0.75 8.10 -51.93 -0.42 0.33 16 46 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 LS Contribution 354.78 15.07 5.35 5.35 Total: -1.00 -28.60 354.78 -9.62 -38.22 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -8.67 Total: 1.92 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -0.84 Total: -11.08 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: -0.43 Total: -51.23 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.60 -9.62 -38.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610813478.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.496 kcal (2) G-P(sol) polarization free energy of solvation -28.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds