Wall clock time and date at job start Mon Mar 30 2020 01:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50698 * 119.99976 * 2 1 4 4 C 1.53002 * 109.47412 * 124.99935 * 3 2 1 5 5 C 1.52999 * 109.47204 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.47235 * 55.00073 * 5 4 3 7 7 C 1.53005 * 109.46888 * 174.99929 * 5 4 3 8 8 C 1.53001 * 109.46812 * 293.62359 * 7 5 4 9 9 N 1.46898 * 109.47011 * 294.99762 * 5 4 3 10 10 C 1.46897 * 111.00016 * 154.90178 * 9 5 4 11 11 C 1.53042 * 109.45605 * 273.65384 * 10 9 5 12 12 C 1.53194 * 109.31061 * 178.60132 * 11 10 9 13 13 N 1.46925 * 108.76826 * 54.65112 * 12 11 10 14 14 C 1.36938 * 120.63007 * 126.36395 * 13 12 11 15 15 H 1.08001 * 119.99700 * 329.55061 * 14 13 12 16 16 C 1.38812 * 119.99973 * 149.56196 * 14 13 12 17 17 N 1.31618 * 119.99969 * 342.25102 * 16 14 13 18 18 Si 1.86798 * 120.00208 * 162.25993 * 16 14 13 19 19 H 1.48502 * 109.47253 * 89.99276 * 18 16 14 20 20 H 1.48498 * 109.47302 * 209.99619 * 18 16 14 21 21 H 1.48504 * 109.46943 * 329.99532 * 18 16 14 22 22 C 1.46923 * 118.73832 * 306.38586 * 13 12 11 23 23 C 1.53035 * 109.46483 * 153.59758 * 10 9 5 24 24 H 1.07998 * 120.00150 * 0.02562 * 1 2 3 25 25 H 1.08004 * 119.99405 * 179.97438 * 1 2 3 26 26 H 1.08007 * 120.00072 * 179.97438 * 2 1 3 27 27 H 1.08998 * 109.46994 * 4.99534 * 3 2 1 28 28 H 1.09008 * 109.47001 * 245.00061 * 3 2 1 29 29 H 1.08998 * 109.46881 * 59.99620 * 4 3 2 30 30 H 1.08997 * 109.46750 * 300.00314 * 4 3 2 31 31 H 1.08995 * 109.46745 * 173.62173 * 7 5 4 32 32 H 1.08995 * 109.47289 * 53.62132 * 7 5 4 33 33 H 1.08998 * 109.47293 * 304.00417 * 8 7 5 34 34 H 1.09006 * 109.46494 * 184.00599 * 8 7 5 35 35 H 1.09000 * 109.47368 * 64.00697 * 8 7 5 36 36 H 1.00903 * 111.00012 * 278.85662 * 9 5 4 37 37 H 1.09001 * 109.45996 * 33.62353 * 10 9 5 38 38 H 1.08997 * 109.49966 * 298.55889 * 11 10 9 39 39 H 1.08993 * 109.50586 * 58.66271 * 11 10 9 40 40 H 1.08997 * 109.59668 * 294.86428 * 12 11 10 41 41 H 1.08999 * 109.70271 * 174.50577 * 12 11 10 42 42 H 0.96996 * 120.00084 * 180.02562 * 17 16 14 43 43 H 1.08997 * 109.58835 * 293.81727 * 22 13 12 44 44 H 1.09000 * 109.70682 * 173.46218 * 22 13 12 45 45 H 1.08998 * 109.49685 * 301.33698 * 23 10 9 46 46 H 1.09006 * 109.49688 * 61.39967 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 6 3.7995 2.6584 1.1820 6 1 3.0909 3.4867 1.1822 7 6 4.6791 2.7395 2.4313 8 6 3.7919 2.8180 3.6753 9 7 4.6441 2.7368 -0.0174 10 6 4.9161 4.1343 -0.3793 11 6 3.7826 4.6624 -1.2616 12 6 4.0521 6.1301 -1.6081 13 7 5.3867 6.2355 -2.2134 14 6 5.5554 6.8421 -3.4294 15 1 4.7640 6.8092 -4.1636 16 6 6.7435 7.4992 -3.7184 17 7 7.5572 7.8467 -2.7440 18 14 7.1874 7.8904 -5.4902 19 1 6.6496 9.2265 -5.8518 20 1 8.6647 7.8940 -5.6411 21 1 6.6008 6.8616 -6.3862 22 6 6.5368 5.6772 -1.4894 23 6 6.2393 4.2147 -1.1439 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5399 -0.9354 -0.0004 26 1 1.8500 -0.9354 0.0004 27 1 1.3585 2.1316 0.0895 28 1 2.6213 1.4026 -0.9315 29 1 3.7399 0.5066 1.0921 30 1 2.4772 1.2356 2.1130 31 1 5.3073 3.6285 2.3762 32 1 5.3095 1.8522 2.4900 33 1 3.1120 3.6649 3.5838 34 1 4.4165 2.9472 4.5593 35 1 3.2155 1.8977 3.7692 36 1 5.5028 2.2227 0.1107 37 1 4.9827 4.7375 0.5261 38 1 3.7316 4.0754 -2.1786 39 1 2.8370 4.5832 -0.7253 40 1 4.0137 6.7329 -0.7009 41 1 3.3014 6.4847 -2.3144 42 1 8.3872 8.3062 -2.9459 43 1 6.7011 6.2432 -0.5724 44 1 7.4269 5.7308 -2.1162 45 1 7.0426 3.8168 -0.5238 46 1 6.1652 3.6314 -2.0618 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610813478.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:57 Heat of formation + Delta-G solvation = -0.992026 kcal Electronic energy + Delta-G solvation = -21074.382547 eV Core-core repulsion = 18191.187606 eV Total energy + Delta-G solvation = -2883.194941 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.99973 -38.19140 -35.92682 -34.83921 -33.14797 -31.68689 -31.20436 -30.18550 -26.95269 -25.62337 -23.90542 -23.69792 -23.02946 -21.13433 -20.69377 -20.42421 -18.69807 -16.98058 -16.58530 -16.44994 -15.72950 -15.59336 -15.44289 -15.32910 -14.98797 -14.72810 -14.47221 -14.03639 -13.82956 -13.58373 -13.15436 -13.08027 -12.97505 -12.64643 -12.50795 -12.47767 -12.37269 -12.34964 -12.06882 -11.96967 -11.83155 -11.67491 -11.45964 -11.38867 -11.14472 -11.02210 -10.54690 -10.12161 -9.17404 -8.66262 -7.89046 -5.35667 1.45878 1.47490 1.50624 1.57843 2.51052 3.19772 3.31574 3.69572 3.80373 4.01294 4.08288 4.15131 4.22775 4.27527 4.42705 4.47752 4.55436 4.55614 4.66424 4.71341 4.74679 4.78130 4.87891 4.96731 4.97753 5.01861 5.07392 5.12931 5.13979 5.16069 5.26656 5.30492 5.36202 5.40683 5.47994 5.50843 5.53352 5.65105 5.72668 5.85488 6.01566 6.26465 6.39579 6.62073 7.14575 7.85144 8.38872 9.17625 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.024689 B = 0.004209 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.825479 B = 6650.796064 C = 7354.139116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.086 4.086 4 C -0.090 4.090 5 C 0.088 3.912 6 H 0.064 0.936 7 C -0.150 4.150 8 C -0.146 4.146 9 N -0.677 5.677 10 C 0.110 3.890 11 C -0.100 4.100 12 C 0.141 3.859 13 N -0.609 5.609 14 C -0.268 4.268 15 H 0.063 0.937 16 C -0.047 4.047 17 N -0.934 5.934 18 Si 0.966 3.034 19 H -0.283 1.283 20 H -0.291 1.291 21 H -0.271 1.271 22 C 0.183 3.817 23 C -0.126 4.126 24 H 0.093 0.907 25 H 0.105 0.895 26 H 0.113 0.887 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.044 0.956 32 H 0.071 0.929 33 H 0.049 0.951 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.342 0.658 37 H 0.029 0.971 38 H 0.053 0.947 39 H 0.067 0.933 40 H 0.008 0.992 41 H 0.052 0.948 42 H 0.250 0.750 43 H -0.006 1.006 44 H 0.047 0.953 45 H 0.066 0.934 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.271 -15.250 10.530 20.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.174 4.174 3 C -0.123 4.123 4 C -0.128 4.128 5 C -0.022 4.022 6 H 0.083 0.917 7 C -0.189 4.189 8 C -0.204 4.204 9 N -0.307 5.307 10 C 0.001 3.999 11 C -0.140 4.140 12 C 0.015 3.985 13 N -0.333 5.333 14 C -0.398 4.398 15 H 0.080 0.920 16 C -0.243 4.243 17 N -0.579 5.579 18 Si 0.794 3.206 19 H -0.210 1.210 20 H -0.217 1.217 21 H -0.196 1.196 22 C 0.057 3.943 23 C -0.166 4.166 24 H 0.111 0.889 25 H 0.124 0.876 26 H 0.131 0.869 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.161 0.839 37 H 0.047 0.953 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.026 0.974 41 H 0.070 0.930 42 H 0.059 0.941 43 H 0.012 0.988 44 H 0.066 0.934 45 H 0.085 0.915 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.667 -15.230 10.070 20.659 hybrid contribution 1.226 1.039 -0.220 1.622 sum -8.441 -14.191 9.850 19.226 Atomic orbital electron populations 1.23959 0.96036 1.02144 1.02126 1.23137 0.96238 0.98842 0.99136 1.20629 0.97554 0.94464 0.99669 1.21458 0.97288 0.96159 0.97925 1.21710 0.94697 0.98534 0.87225 0.91736 1.22203 0.98968 1.01589 0.96174 1.21739 0.99634 1.02227 0.96808 1.60637 1.22151 1.11545 1.36359 1.21147 0.94314 0.88792 0.95667 1.21787 0.97540 0.95482 0.99166 1.21068 0.87160 0.94938 0.95366 1.44277 1.02851 1.65860 1.20287 1.19472 1.01720 1.27240 0.91374 0.91972 1.25843 0.99456 0.97854 1.01101 1.70192 1.12960 1.42904 1.31884 0.85307 0.76794 0.78094 0.80432 1.20986 1.21686 1.19556 1.20463 0.90562 0.89816 0.93453 1.22155 0.96631 0.97941 0.99837 0.88855 0.87649 0.86932 0.92810 0.91214 0.91574 0.90826 0.93682 0.91028 0.93181 0.92496 0.91331 0.83860 0.95319 0.92858 0.91444 0.97374 0.92988 0.94059 0.98830 0.93426 0.91531 0.92649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.46 14.32 67.78 0.97 -2.49 16 2 C -0.16 -2.81 9.52 25.65 0.24 -2.56 16 3 C -0.09 -1.75 5.54 29.85 0.17 -1.58 16 4 C -0.09 -1.64 4.76 30.59 0.15 -1.50 16 5 C 0.09 1.89 1.85 44.92 0.08 1.97 16 6 H 0.06 1.56 7.21 -2.39 -0.02 1.54 16 7 C -0.15 -2.92 5.36 30.60 0.16 -2.76 16 8 C -0.15 -2.42 9.60 71.98 0.69 -1.73 16 9 N -0.68 -17.27 5.52 -469.34 -2.59 -19.86 16 10 C 0.11 3.60 2.24 44.94 0.10 3.70 16 11 C -0.10 -3.53 5.58 30.67 0.17 -3.36 16 12 C 0.14 6.10 6.52 86.36 0.56 6.66 16 13 N -0.61 -31.64 2.98 -699.12 -2.08 -33.72 16 14 C -0.27 -15.20 9.55 84.03 0.80 -14.40 16 15 H 0.06 3.46 7.89 -2.91 -0.02 3.44 16 16 C -0.05 -2.67 4.87 84.86 0.41 -2.25 16 17 N -0.93 -56.24 11.43 21.65 0.25 -55.99 16 18 Si 0.97 45.54 29.59 68.60 2.03 47.57 16 19 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 20 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 21 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 22 C 0.18 9.03 5.29 86.36 0.46 9.48 16 23 C -0.13 -4.75 5.35 30.67 0.16 -4.58 16 24 H 0.09 1.57 7.84 -2.91 -0.02 1.55 16 25 H 0.11 1.46 8.06 -2.91 -0.02 1.44 16 26 H 0.11 1.81 8.06 -2.91 -0.02 1.79 16 27 H 0.05 1.14 7.79 -2.39 -0.02 1.12 16 28 H 0.07 1.69 7.75 -2.38 -0.02 1.67 16 29 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.07 1.18 6.48 -2.39 -0.02 1.17 16 31 H 0.04 1.04 7.39 -2.39 -0.02 1.02 16 32 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 35 H 0.07 0.97 6.69 -2.39 -0.02 0.95 16 36 H 0.34 8.12 8.06 -89.69 -0.72 7.40 16 37 H 0.03 0.99 7.11 -2.39 -0.02 0.98 16 38 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.07 2.08 7.52 -2.39 -0.02 2.06 16 40 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 41 H 0.05 2.22 7.93 -2.39 -0.02 2.21 16 42 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 43 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 44 H 0.05 2.64 6.28 -2.39 -0.01 2.62 16 45 H 0.07 2.19 8.10 -2.39 -0.02 2.17 16 46 H 0.05 2.18 8.14 -2.38 -0.02 2.16 16 Total: -1.00 -62.09 354.78 2.93 -59.16 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: 0.19 Total: 18.23 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: 5.14 Total: -15.39 kcal Atomic # 7 Polarization: -105.14 SS G_CDS: -4.42 Total: -109.56 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -62.09 2.93 -59.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610813478.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.170 kcal (2) G-P(sol) polarization free energy of solvation -62.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds