Wall clock time and date at job start Mon Mar 30 2020 01:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 119.99573 * 2 1 4 4 C 1.53000 * 109.47146 * 125.00425 * 3 2 1 5 5 C 1.52999 * 109.47169 * 179.97438 * 4 3 2 6 6 H 1.08993 * 109.46884 * 304.99393 * 5 4 3 7 7 C 1.53004 * 109.46939 * 184.99352 * 5 4 3 8 8 C 1.53005 * 109.46845 * 175.94651 * 7 5 4 9 9 N 1.46900 * 109.47195 * 64.99635 * 5 4 3 10 10 C 1.46900 * 110.99734 * 225.42704 * 9 5 4 11 11 C 1.53037 * 109.45305 * 85.40117 * 10 9 5 12 12 C 1.53190 * 109.31615 * 181.37914 * 11 10 9 13 13 N 1.46930 * 108.77459 * 305.36437 * 12 11 10 14 14 C 1.36938 * 120.62953 * 233.58995 * 13 12 11 15 15 H 1.07995 * 120.00338 * 150.81716 * 14 13 12 16 16 C 1.38811 * 119.99901 * 330.81468 * 14 13 12 17 17 N 1.31621 * 120.00112 * 336.24458 * 16 14 13 18 18 Si 1.86803 * 120.00099 * 156.24576 * 16 14 13 19 19 H 1.48497 * 109.47124 * 84.98611 * 18 16 14 20 20 H 1.48503 * 109.46876 * 204.98944 * 18 16 14 21 21 H 1.48494 * 109.46698 * 324.98469 * 18 16 14 22 22 C 1.46928 * 118.73780 * 53.60611 * 13 12 11 23 23 C 1.53048 * 109.45703 * 205.46363 * 10 9 5 24 24 H 1.08001 * 119.99685 * 180.02562 * 1 2 3 25 25 H 1.07995 * 120.00261 * 0.02562 * 1 2 3 26 26 H 1.07995 * 120.00261 * 179.97438 * 2 1 3 27 27 H 1.08994 * 109.47454 * 4.99629 * 3 2 1 28 28 H 1.09003 * 109.46505 * 244.99586 * 3 2 1 29 29 H 1.08994 * 109.47594 * 59.99290 * 4 3 2 30 30 H 1.09011 * 109.46774 * 299.99375 * 4 3 2 31 31 H 1.08998 * 109.47297 * 295.94484 * 7 5 4 32 32 H 1.09007 * 109.46873 * 55.94937 * 7 5 4 33 33 H 1.09006 * 109.47035 * 304.90605 * 8 7 5 34 34 H 1.08994 * 109.46987 * 64.90332 * 8 7 5 35 35 H 1.08997 * 109.46810 * 184.90700 * 8 7 5 36 36 H 1.00893 * 111.00110 * 349.37846 * 9 5 4 37 37 H 1.08998 * 109.46288 * 325.42831 * 10 9 5 38 38 H 1.09001 * 109.49427 * 301.33376 * 11 10 9 39 39 H 1.08993 * 109.49881 * 61.42139 * 11 10 9 40 40 H 1.08996 * 109.58816 * 185.57534 * 12 11 10 41 41 H 1.09004 * 109.58792 * 65.14624 * 12 11 10 42 42 H 0.96999 * 120.00405 * 179.97438 * 17 16 14 43 43 H 1.09006 * 109.58310 * 186.60788 * 22 13 12 44 44 H 1.08992 * 109.70131 * 66.24989 * 22 13 12 45 45 H 1.09002 * 109.49426 * 298.57683 * 23 10 9 46 46 H 1.08992 * 109.50087 * 58.67210 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3332 1.1816 5 6 3.8004 2.6580 1.1812 6 1 4.2865 2.7964 0.2155 7 6 4.8584 2.6360 2.2863 8 6 5.6903 3.9185 2.2213 9 7 2.8643 3.7643 1.4214 10 6 3.1096 4.8731 0.4894 11 6 2.3547 4.6171 -0.8170 12 6 2.6402 5.7578 -1.7989 13 7 2.3087 7.0339 -1.1506 14 6 1.4558 7.9210 -1.7515 15 1 0.8530 8.5837 -1.1484 16 6 1.3661 7.9683 -3.1359 17 7 2.3695 7.5453 -3.8753 18 14 -0.1787 8.6325 -3.9496 19 1 -0.0902 10.1116 -4.0466 20 1 -0.3088 8.0539 -5.3111 21 1 -1.3649 8.2597 -3.1379 22 6 2.9099 7.3404 0.1545 23 6 2.6215 6.1820 1.1146 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9352 -0.0004 26 1 1.8500 -0.9352 0.0004 27 1 1.3585 2.1316 0.0895 28 1 2.6212 1.4026 -0.9314 29 1 3.7399 0.5067 1.0921 30 1 2.4772 1.2357 2.1130 31 1 4.3680 2.5699 3.2575 32 1 5.5098 1.7729 2.1486 33 1 6.1103 4.0288 1.2215 34 1 5.0551 4.7754 2.4452 35 1 6.4983 3.8646 2.9509 36 1 1.9080 3.4480 1.3633 37 1 4.1775 4.9451 0.2837 38 1 2.6861 3.6731 -1.2496 39 1 1.2846 4.5696 -0.6156 40 1 2.0288 5.6323 -2.6925 41 1 3.6955 5.7498 -2.0716 42 1 2.3067 7.5780 -4.8427 43 1 2.4764 8.2591 0.5498 44 1 3.9872 7.4630 0.0431 45 1 1.5488 6.1198 1.2978 46 1 3.1426 6.3518 2.0566 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610813479.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:00 Heat of formation + Delta-G solvation = 15.213437 kcal Electronic energy + Delta-G solvation = -21452.267568 eV Core-core repulsion = 18569.775349 eV Total energy + Delta-G solvation = -2882.492219 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -38.86288 -36.71806 -34.85380 -33.19879 -31.45697 -30.61899 -29.81393 -28.53692 -25.86897 -24.26640 -22.25377 -22.06871 -21.41901 -20.41386 -19.84832 -18.94950 -16.77232 -15.98860 -15.15872 -15.08105 -14.73273 -14.05177 -13.84992 -13.64863 -13.44998 -13.40660 -13.02553 -12.87859 -12.65254 -12.53437 -12.11121 -11.68383 -11.56561 -11.35024 -11.14880 -10.98331 -10.83969 -10.71301 -10.63603 -10.61715 -10.45150 -10.29026 -10.14291 -9.95262 -9.62307 -9.47679 -9.36088 -8.43258 -7.95018 -6.64110 -5.79037 -3.17198 2.19981 3.38491 3.45840 3.49272 4.43918 4.52816 4.62588 4.88760 5.01341 5.20689 5.23738 5.34888 5.38262 5.47342 5.48423 5.59784 5.63632 5.66071 5.74955 5.82911 5.86230 5.97622 5.99759 6.07975 6.13506 6.16748 6.21051 6.31167 6.37582 6.49819 6.53377 6.58930 6.61368 6.66580 6.70286 6.73752 6.88742 7.05790 7.30300 7.48898 7.55594 7.76889 7.84489 8.46950 9.22439 9.87872 10.46671 11.29471 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.017369 B = 0.005411 C = 0.004441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.695351 B = 5173.711328 C = 6302.900061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.150 4.150 3 C -0.101 4.101 4 C -0.123 4.123 5 C 0.085 3.915 6 H 0.054 0.946 7 C -0.107 4.107 8 C -0.147 4.147 9 N -0.682 5.682 10 C 0.096 3.904 11 C -0.166 4.166 12 C 0.178 3.822 13 N -0.590 5.590 14 C -0.257 4.257 15 H 0.064 0.936 16 C 0.007 3.993 17 N -0.896 5.896 18 Si 0.893 3.107 19 H -0.286 1.286 20 H -0.290 1.290 21 H -0.280 1.280 22 C 0.145 3.855 23 C -0.117 4.117 24 H 0.094 0.906 25 H 0.097 0.903 26 H 0.105 0.895 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.046 0.954 34 H 0.066 0.934 35 H 0.043 0.957 36 H 0.336 0.664 37 H 0.070 0.930 38 H 0.045 0.955 39 H 0.054 0.946 40 H 0.074 0.926 41 H 0.017 0.983 42 H 0.253 0.747 43 H 0.053 0.947 44 H 0.015 0.985 45 H 0.055 0.945 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.105 -13.417 10.175 16.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.168 4.168 3 C -0.138 4.138 4 C -0.161 4.161 5 C -0.026 4.026 6 H 0.073 0.927 7 C -0.145 4.145 8 C -0.205 4.205 9 N -0.313 5.313 10 C -0.014 4.014 11 C -0.207 4.207 12 C 0.051 3.949 13 N -0.313 5.313 14 C -0.386 4.386 15 H 0.081 0.919 16 C -0.193 4.193 17 N -0.539 5.539 18 Si 0.723 3.277 19 H -0.213 1.213 20 H -0.216 1.216 21 H -0.206 1.206 22 C 0.018 3.982 23 C -0.157 4.157 24 H 0.112 0.888 25 H 0.116 0.884 26 H 0.123 0.877 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.062 0.938 36 H 0.156 0.844 37 H 0.088 0.912 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.092 0.908 41 H 0.035 0.965 42 H 0.063 0.937 43 H 0.072 0.928 44 H 0.033 0.967 45 H 0.073 0.927 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.506 -13.131 10.505 17.002 hybrid contribution -1.147 -0.139 -1.475 1.874 sum 1.359 -13.270 9.030 16.108 Atomic orbital electron populations 1.23871 0.96048 1.01815 1.01677 1.22947 0.96003 0.98400 0.99494 1.20908 0.98509 0.95431 0.98977 1.21879 0.98103 0.97738 0.98399 1.21633 0.93672 0.89597 0.97648 0.92748 1.21511 0.96484 0.97384 0.99126 1.21725 0.99202 0.98843 1.00712 1.60754 1.07317 1.08677 1.54594 1.21606 0.99236 0.90620 0.89890 1.22880 0.99911 0.99729 0.98158 1.20586 0.97909 0.82703 0.93709 1.44033 1.52806 1.16082 1.18356 1.19096 1.14378 1.16093 0.89067 0.91878 1.24992 0.97296 1.00040 0.96956 1.70126 1.28446 1.50861 1.04461 0.86462 0.84052 0.78594 0.78611 1.21259 1.21601 1.20556 1.20924 0.95469 0.94961 0.86852 1.21978 1.00616 0.94951 0.98139 0.88783 0.88446 0.87710 0.91102 0.90926 0.91567 0.91346 0.91855 0.92879 0.93452 0.91499 0.93757 0.84447 0.91179 0.93648 0.92714 0.90793 0.96529 0.93718 0.92827 0.96705 0.92654 0.92711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.99 14.32 29.01 0.42 -1.57 16 2 C -0.15 -1.54 9.52 -36.03 -0.34 -1.88 16 3 C -0.10 -1.12 4.93 -27.88 -0.14 -1.26 16 4 C -0.12 -1.28 4.61 -26.73 -0.12 -1.40 16 5 C 0.08 1.02 1.97 -67.71 -0.13 0.88 16 6 H 0.05 0.74 7.22 -51.93 -0.37 0.36 16 7 C -0.11 -1.20 5.62 -26.73 -0.15 -1.35 16 8 C -0.15 -1.77 8.78 37.16 0.33 -1.45 16 9 N -0.68 -9.35 5.70 -99.69 -0.57 -9.92 16 10 C 0.10 1.58 1.59 -67.67 -0.11 1.47 16 11 C -0.17 -3.08 4.99 -26.61 -0.13 -3.21 16 12 C 0.18 4.22 5.35 -3.71 -0.02 4.20 16 13 N -0.59 -14.87 2.98 -172.32 -0.51 -15.38 16 14 C -0.26 -7.14 9.52 -15.06 -0.14 -7.28 16 15 H 0.06 1.73 7.93 -52.49 -0.42 1.32 16 16 C 0.01 0.18 4.71 -17.43 -0.08 0.10 16 17 N -0.90 -26.33 11.75 55.49 0.65 -25.67 16 18 Si 0.89 21.79 29.62 -169.99 -5.03 16.75 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 C 0.14 3.09 6.52 -3.71 -0.02 3.07 16 23 C -0.12 -2.08 5.69 -26.61 -0.15 -2.23 16 24 H 0.09 0.81 8.06 -52.49 -0.42 0.39 16 25 H 0.10 1.02 7.84 -52.49 -0.41 0.60 16 26 H 0.10 0.94 8.06 -52.49 -0.42 0.52 16 27 H 0.07 0.86 6.05 -51.93 -0.31 0.55 16 28 H 0.07 0.86 7.84 -51.93 -0.41 0.45 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.05 0.59 8.03 -51.93 -0.42 0.17 16 34 H 0.07 0.90 7.38 -51.93 -0.38 0.52 16 35 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.34 4.58 6.38 -39.30 -0.25 4.33 16 37 H 0.07 1.23 6.68 -51.93 -0.35 0.88 16 38 H 0.04 0.77 6.94 -51.93 -0.36 0.41 16 39 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.07 1.97 6.37 -51.93 -0.33 1.63 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.05 1.13 7.93 -51.93 -0.41 0.72 16 44 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 351.91 15.07 5.30 5.30 Total: -1.00 -28.56 351.91 -9.60 -38.16 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -8.63 Total: 2.66 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: -0.81 Total: -11.90 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: -0.43 Total: -50.98 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.56 -9.60 -38.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610813479.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.373 kcal (2) G-P(sol) polarization free energy of solvation -28.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds