Wall clock time and date at job start Mon Mar 30 2020 01:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 119.99573 * 2 1 4 4 C 1.53000 * 109.47146 * 125.00425 * 3 2 1 5 5 C 1.52999 * 109.47169 * 179.97438 * 4 3 2 6 6 H 1.08993 * 109.46884 * 304.99393 * 5 4 3 7 7 C 1.53004 * 109.46939 * 184.99352 * 5 4 3 8 8 C 1.53005 * 109.46845 * 175.94651 * 7 5 4 9 9 N 1.46900 * 109.47195 * 64.99635 * 5 4 3 10 10 C 1.46900 * 110.99734 * 225.42704 * 9 5 4 11 11 C 1.53037 * 109.45305 * 85.40117 * 10 9 5 12 12 C 1.53190 * 109.31615 * 181.37914 * 11 10 9 13 13 N 1.46930 * 108.77459 * 305.36437 * 12 11 10 14 14 C 1.36938 * 120.62953 * 233.58995 * 13 12 11 15 15 H 1.07995 * 120.00338 * 150.81716 * 14 13 12 16 16 C 1.38811 * 119.99901 * 330.81468 * 14 13 12 17 17 N 1.31621 * 120.00112 * 336.24458 * 16 14 13 18 18 Si 1.86803 * 120.00099 * 156.24576 * 16 14 13 19 19 H 1.48497 * 109.47124 * 84.98611 * 18 16 14 20 20 H 1.48503 * 109.46876 * 204.98944 * 18 16 14 21 21 H 1.48494 * 109.46698 * 324.98469 * 18 16 14 22 22 C 1.46928 * 118.73780 * 53.60611 * 13 12 11 23 23 C 1.53048 * 109.45703 * 205.46363 * 10 9 5 24 24 H 1.08001 * 119.99685 * 180.02562 * 1 2 3 25 25 H 1.07995 * 120.00261 * 0.02562 * 1 2 3 26 26 H 1.07995 * 120.00261 * 179.97438 * 2 1 3 27 27 H 1.08994 * 109.47454 * 4.99629 * 3 2 1 28 28 H 1.09003 * 109.46505 * 244.99586 * 3 2 1 29 29 H 1.08994 * 109.47594 * 59.99290 * 4 3 2 30 30 H 1.09011 * 109.46774 * 299.99375 * 4 3 2 31 31 H 1.08998 * 109.47297 * 295.94484 * 7 5 4 32 32 H 1.09007 * 109.46873 * 55.94937 * 7 5 4 33 33 H 1.09006 * 109.47035 * 304.90605 * 8 7 5 34 34 H 1.08994 * 109.46987 * 64.90332 * 8 7 5 35 35 H 1.08997 * 109.46810 * 184.90700 * 8 7 5 36 36 H 1.00893 * 111.00110 * 349.37846 * 9 5 4 37 37 H 1.08998 * 109.46288 * 325.42831 * 10 9 5 38 38 H 1.09001 * 109.49427 * 301.33376 * 11 10 9 39 39 H 1.08993 * 109.49881 * 61.42139 * 11 10 9 40 40 H 1.08996 * 109.58816 * 185.57534 * 12 11 10 41 41 H 1.09004 * 109.58792 * 65.14624 * 12 11 10 42 42 H 0.96999 * 120.00405 * 179.97438 * 17 16 14 43 43 H 1.09006 * 109.58310 * 186.60788 * 22 13 12 44 44 H 1.08992 * 109.70131 * 66.24989 * 22 13 12 45 45 H 1.09002 * 109.49426 * 298.57683 * 23 10 9 46 46 H 1.08992 * 109.50087 * 58.67210 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3332 1.1816 5 6 3.8004 2.6580 1.1812 6 1 4.2865 2.7964 0.2155 7 6 4.8584 2.6360 2.2863 8 6 5.6903 3.9185 2.2213 9 7 2.8643 3.7643 1.4214 10 6 3.1096 4.8731 0.4894 11 6 2.3547 4.6171 -0.8170 12 6 2.6402 5.7578 -1.7989 13 7 2.3087 7.0339 -1.1506 14 6 1.4558 7.9210 -1.7515 15 1 0.8530 8.5837 -1.1484 16 6 1.3661 7.9683 -3.1359 17 7 2.3695 7.5453 -3.8753 18 14 -0.1787 8.6325 -3.9496 19 1 -0.0902 10.1116 -4.0466 20 1 -0.3088 8.0539 -5.3111 21 1 -1.3649 8.2597 -3.1379 22 6 2.9099 7.3404 0.1545 23 6 2.6215 6.1820 1.1146 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9352 -0.0004 26 1 1.8500 -0.9352 0.0004 27 1 1.3585 2.1316 0.0895 28 1 2.6212 1.4026 -0.9314 29 1 3.7399 0.5067 1.0921 30 1 2.4772 1.2357 2.1130 31 1 4.3680 2.5699 3.2575 32 1 5.5098 1.7729 2.1486 33 1 6.1103 4.0288 1.2215 34 1 5.0551 4.7754 2.4452 35 1 6.4983 3.8646 2.9509 36 1 1.9080 3.4480 1.3633 37 1 4.1775 4.9451 0.2837 38 1 2.6861 3.6731 -1.2496 39 1 1.2846 4.5696 -0.6156 40 1 2.0288 5.6323 -2.6925 41 1 3.6955 5.7498 -2.0716 42 1 2.3067 7.5780 -4.8427 43 1 2.4764 8.2591 0.5498 44 1 3.9872 7.4630 0.0431 45 1 1.5488 6.1198 1.2978 46 1 3.1426 6.3518 2.0566 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610813479.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:00 Heat of formation + Delta-G solvation = -0.075670 kcal Electronic energy + Delta-G solvation = -21452.930554 eV Core-core repulsion = 18569.775349 eV Total energy + Delta-G solvation = -2883.155204 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.15583 -38.14873 -35.89480 -34.77756 -33.03158 -31.73162 -31.50701 -29.98959 -27.12119 -25.94766 -23.82636 -23.11465 -23.04240 -21.51772 -20.80486 -20.36121 -18.73106 -17.06616 -16.75339 -16.32053 -16.01787 -15.53092 -15.37347 -14.97845 -14.76791 -14.59981 -14.55860 -14.27946 -13.91910 -13.64485 -13.48175 -13.06884 -13.00724 -12.62612 -12.60343 -12.41491 -12.39277 -12.11234 -12.04041 -11.95400 -11.77617 -11.69727 -11.55554 -11.41016 -11.22164 -11.02378 -10.54558 -10.18653 -9.18751 -8.69619 -7.91497 -5.33367 1.42064 1.43968 1.46187 1.55984 2.50104 3.19234 3.30466 3.68825 3.76088 3.94722 4.08706 4.11059 4.23532 4.36176 4.38202 4.45768 4.50219 4.53932 4.60596 4.69920 4.76384 4.77603 4.85182 4.90683 4.93259 5.01055 5.04314 5.15392 5.21325 5.22265 5.24318 5.28507 5.34947 5.36710 5.42206 5.48745 5.58376 5.64836 5.66785 5.76304 5.91921 6.28165 6.36578 6.61189 7.12208 7.84445 8.38343 9.14752 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.017369 B = 0.005411 C = 0.004441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.695351 B = 5173.711328 C = 6302.900061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.155 4.155 3 C -0.100 4.100 4 C -0.113 4.113 5 C 0.083 3.917 6 H 0.040 0.960 7 C -0.102 4.102 8 C -0.147 4.147 9 N -0.673 5.673 10 C 0.110 3.890 11 C -0.147 4.147 12 C 0.184 3.816 13 N -0.607 5.607 14 C -0.270 4.270 15 H 0.063 0.937 16 C -0.044 4.044 17 N -0.930 5.930 18 Si 0.960 3.040 19 H -0.281 1.281 20 H -0.292 1.292 21 H -0.272 1.272 22 C 0.141 3.859 23 C -0.103 4.103 24 H 0.109 0.891 25 H 0.089 0.911 26 H 0.121 0.879 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.036 0.964 34 H 0.050 0.950 35 H 0.057 0.943 36 H 0.340 0.660 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.050 0.950 40 H 0.039 0.961 41 H -0.007 1.007 42 H 0.250 0.750 43 H 0.052 0.948 44 H 0.010 0.990 45 H 0.051 0.949 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.725 -14.910 11.751 19.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.173 4.173 3 C -0.138 4.138 4 C -0.151 4.151 5 C -0.026 4.026 6 H 0.058 0.942 7 C -0.141 4.141 8 C -0.204 4.204 9 N -0.304 5.304 10 C 0.000 4.000 11 C -0.188 4.188 12 C 0.058 3.942 13 N -0.331 5.331 14 C -0.400 4.400 15 H 0.081 0.919 16 C -0.241 4.241 17 N -0.575 5.575 18 Si 0.787 3.213 19 H -0.207 1.207 20 H -0.218 1.218 21 H -0.198 1.198 22 C 0.015 3.985 23 C -0.143 4.143 24 H 0.127 0.873 25 H 0.107 0.893 26 H 0.139 0.861 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.159 0.841 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.058 0.942 41 H 0.011 0.989 42 H 0.059 0.941 43 H 0.071 0.929 44 H 0.028 0.972 45 H 0.070 0.930 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.125 -14.633 12.118 19.117 hybrid contribution -0.975 0.340 -1.941 2.199 sum 1.150 -14.293 10.177 17.583 Atomic orbital electron populations 1.24004 0.96221 1.02229 1.01427 1.23024 0.96092 0.98482 0.99673 1.20868 0.98380 0.95640 0.98879 1.21799 0.98029 0.97089 0.98193 1.21708 0.93665 0.89807 0.97444 0.94151 1.21491 0.96233 0.97582 0.98745 1.21707 0.99482 0.98701 1.00509 1.60728 1.07966 1.08743 1.52969 1.21341 0.98189 0.91346 0.89117 1.22660 0.99968 0.98100 0.98041 1.20415 0.95651 0.84265 0.93911 1.44301 1.53023 1.16330 1.19438 1.19425 1.14714 1.16274 0.89551 0.91909 1.25748 0.99858 1.00992 0.97467 1.70254 1.30234 1.52670 1.04352 0.85425 0.80541 0.77996 0.77316 1.20714 1.21819 1.19754 1.21068 0.94823 0.96656 0.85979 1.21796 1.00608 0.93962 0.97932 0.87254 0.89283 0.86123 0.92488 0.91954 0.89915 0.90788 0.91441 0.91087 0.94463 0.93115 0.92361 0.84071 0.91908 0.92131 0.93130 0.94222 0.98858 0.94089 0.92942 0.97218 0.93044 0.90525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.72 14.32 67.78 0.97 -2.75 16 2 C -0.15 -2.84 9.52 25.64 0.24 -2.60 16 3 C -0.10 -2.06 4.93 29.85 0.15 -1.91 16 4 C -0.11 -2.05 4.61 30.59 0.14 -1.90 16 5 C 0.08 1.83 1.97 44.92 0.09 1.92 16 6 H 0.04 1.03 7.22 -2.39 -0.02 1.01 16 7 C -0.10 -2.01 5.62 30.60 0.17 -1.84 16 8 C -0.15 -3.25 8.78 71.98 0.63 -2.62 16 9 N -0.67 -17.22 5.70 -469.33 -2.67 -19.89 16 10 C 0.11 3.54 1.59 44.94 0.07 3.61 16 11 C -0.15 -5.45 4.99 30.67 0.15 -5.30 16 12 C 0.18 9.02 5.35 86.36 0.46 9.48 16 13 N -0.61 -31.24 2.98 -699.09 -2.08 -33.32 16 14 C -0.27 -15.22 9.52 84.03 0.80 -14.42 16 15 H 0.06 3.48 7.93 -2.91 -0.02 3.46 16 16 C -0.04 -2.53 4.71 84.86 0.40 -2.13 16 17 N -0.93 -56.26 11.75 21.65 0.25 -56.01 16 18 Si 0.96 45.45 29.62 68.60 2.03 47.48 16 19 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 20 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 21 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 22 C 0.14 6.02 6.52 86.36 0.56 6.58 16 23 C -0.10 -3.56 5.69 30.68 0.17 -3.39 16 24 H 0.11 1.65 8.06 -2.91 -0.02 1.63 16 25 H 0.09 1.77 7.84 -2.91 -0.02 1.75 16 26 H 0.12 1.83 8.06 -2.91 -0.02 1.81 16 27 H 0.06 1.32 6.05 -2.39 -0.01 1.30 16 28 H 0.06 1.40 7.84 -2.39 -0.02 1.39 16 29 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 31 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.04 0.88 8.03 -2.38 -0.02 0.86 16 34 H 0.05 1.28 7.38 -2.39 -0.02 1.26 16 35 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.34 8.58 6.38 -89.70 -0.57 8.01 16 37 H 0.06 2.16 6.68 -2.39 -0.02 2.14 16 38 H 0.06 2.05 6.94 -2.39 -0.02 2.03 16 39 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.04 2.19 6.37 -2.39 -0.02 2.17 16 41 H -0.01 -0.35 8.14 -2.38 -0.02 -0.37 16 42 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 43 H 0.05 2.22 7.93 -2.38 -0.02 2.20 16 44 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 45 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.08 2.33 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -62.03 351.91 2.88 -59.14 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: 0.34 Total: 19.87 kcal Atomic # 6 Polarization: -22.29 SS G_CDS: 5.02 Total: -17.27 kcal Atomic # 7 Polarization: -104.72 SS G_CDS: -4.50 Total: -109.23 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -62.03 2.88 -59.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610813479.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.069 kcal (2) G-P(sol) polarization free energy of solvation -62.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds