Wall clock time and date at job start Mon Mar 30 2020 01:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47192 * 2 1 4 4 H 1.08998 * 110.05320 * 304.86913 * 3 2 1 5 5 C 1.54366 * 110.05123 * 66.34902 * 3 2 1 6 6 C 1.54884 * 104.20049 * 142.90667 * 5 3 2 7 7 C 1.54886 * 102.74970 * 322.03323 * 6 5 3 8 8 C 1.53879 * 110.03055 * 183.46109 * 3 2 1 9 9 H 1.08996 * 110.03349 * 121.38210 * 8 3 2 10 10 N 1.46901 * 110.03230 * 359.97438 * 8 3 2 11 11 C 1.46901 * 110.99906 * 168.97091 * 10 8 3 12 12 C 1.53035 * 109.45947 * 155.00192 * 11 10 8 13 13 C 1.53187 * 109.31536 * 181.37293 * 12 11 10 14 14 N 1.46932 * 108.77754 * 305.36738 * 13 12 11 15 15 C 1.36936 * 120.63305 * 233.58423 * 14 13 12 16 16 H 1.07996 * 119.99681 * 149.50131 * 15 14 13 17 17 C 1.38809 * 119.99740 * 329.22026 * 15 14 13 18 18 N 1.31614 * 120.00441 * 348.93194 * 17 15 14 19 19 Si 1.86803 * 119.99711 * 168.92536 * 17 15 14 20 20 H 1.48502 * 109.47110 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46827 * 120.00408 * 19 17 15 22 22 H 1.48499 * 109.47517 * 240.00206 * 19 17 15 23 23 C 1.46930 * 118.73358 * 53.85685 * 14 13 12 24 24 C 1.53044 * 109.45225 * 275.06639 * 11 10 8 25 25 H 1.08997 * 109.46554 * 60.00174 * 1 2 3 26 26 H 1.08997 * 109.47166 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47204 * 300.00678 * 1 2 3 28 28 H 1.09000 * 109.47204 * 239.99322 * 2 1 3 29 29 H 1.09006 * 109.46658 * 120.00049 * 2 1 3 30 30 H 1.09004 * 110.50915 * 24.21879 * 5 3 2 31 31 H 1.09001 * 110.57406 * 261.63241 * 5 3 2 32 32 H 1.09004 * 110.76138 * 203.71287 * 6 5 3 33 33 H 1.09009 * 110.91261 * 80.42118 * 6 5 3 34 34 H 1.09002 * 110.48639 * 279.26277 * 7 6 5 35 35 H 1.08998 * 110.60012 * 156.67484 * 7 6 5 36 36 H 1.00902 * 110.99739 * 45.02758 * 10 8 3 37 37 H 1.09000 * 109.45821 * 35.03257 * 11 10 8 38 38 H 1.09002 * 109.49853 * 61.42546 * 12 11 10 39 39 H 1.08999 * 109.52643 * 301.34278 * 12 11 10 40 40 H 1.08999 * 109.59085 * 185.57956 * 13 12 11 41 41 H 1.08996 * 109.70575 * 65.22461 * 13 12 11 42 42 H 0.97001 * 120.00631 * 179.97438 * 18 17 15 43 43 H 1.09005 * 109.58669 * 65.93155 * 23 14 13 44 44 H 1.09007 * 109.57982 * 186.35048 * 23 14 13 45 45 H 1.09003 * 109.49278 * 298.57452 * 24 11 10 46 46 H 1.09000 * 109.49503 * 58.66552 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6127 1.9899 -0.8401 5 6 1.6680 2.1353 1.3283 6 6 2.8889 3.0352 1.6424 7 6 4.0839 2.1604 1.1891 8 6 3.5763 1.4583 -0.0873 9 1 3.8944 2.0129 -0.9700 10 7 4.0913 0.0837 -0.1437 11 6 5.5193 0.0703 -0.4883 12 6 6.1612 -1.2112 0.0481 13 6 7.6568 -1.2057 -0.2830 14 7 7.8202 -1.0088 -1.7299 15 6 8.5672 -1.8833 -2.4731 16 1 8.3185 -2.0609 -3.5090 17 6 9.6475 -2.5371 -1.8967 18 7 10.0894 -2.1624 -0.7150 19 14 10.4742 -3.9489 -2.7984 20 1 9.7931 -4.1721 -4.0990 21 1 11.9012 -3.6151 -3.0382 22 1 10.3859 -5.1816 -1.9750 23 6 7.1718 0.1477 -2.3630 24 6 5.6771 0.1239 -2.0096 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 1.5254 1.3969 2.1174 31 1 0.7695 2.7403 1.2062 32 1 2.9482 3.2471 2.7100 33 1 2.8480 3.9608 1.0681 34 1 4.3315 1.4260 1.9556 35 1 4.9505 2.7819 0.9637 36 1 3.5578 -0.4760 -0.7920 37 1 6.0087 0.9359 -0.0418 38 1 5.6889 -2.0767 -0.4167 39 1 6.0280 -1.2607 1.1287 40 1 8.0991 -2.1584 0.0083 41 1 8.1491 -0.3950 0.2539 42 1 10.8441 -2.6195 -0.3120 43 1 7.6232 1.0680 -1.9923 44 1 7.2941 0.0883 -3.4446 45 1 5.2092 -0.7542 -2.4549 46 1 5.1992 1.0253 -2.3934 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610813575.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:30 Heat of formation + Delta-G solvation = 0.001282 kcal Electronic energy + Delta-G solvation = -21449.771818 eV Core-core repulsion = 18566.619951 eV Total energy + Delta-G solvation = -2883.151867 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.40788 -37.34786 -34.28153 -33.14752 -31.80546 -30.02269 -29.20434 -27.59540 -26.49468 -24.29900 -22.91123 -22.09531 -21.43979 -20.48509 -19.09365 -18.73946 -16.79710 -15.97663 -15.41744 -15.03012 -14.67303 -14.32051 -14.08750 -13.64692 -13.43143 -13.20560 -13.01525 -12.71270 -12.49279 -12.35165 -11.94362 -11.42659 -11.32760 -11.18777 -11.03318 -11.01794 -10.75409 -10.73285 -10.66789 -10.57309 -10.53777 -10.35176 -10.16040 -10.07246 -9.90283 -9.65285 -9.37551 -8.45399 -7.93383 -6.57580 -5.73880 -3.21179 3.38817 3.46163 3.48351 4.43347 4.52135 4.56545 4.60302 4.85429 5.17393 5.19913 5.29647 5.38745 5.46446 5.51074 5.56945 5.58299 5.61092 5.64506 5.73801 5.75796 5.85704 5.91910 5.97056 6.00494 6.04338 6.09288 6.16605 6.22789 6.25302 6.36409 6.41538 6.45139 6.58372 6.69917 6.75263 6.78810 6.92771 7.00988 7.45569 7.52750 7.75796 7.79837 7.84499 8.52430 9.27365 9.89181 10.47467 11.33900 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.034755 B = 0.004116 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.443331 B = 6800.938613 C = 7079.158360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.089 4.089 4 H 0.065 0.935 5 C -0.113 4.113 6 C -0.125 4.125 7 C -0.114 4.114 8 C 0.085 3.915 9 H 0.037 0.963 10 N -0.681 5.681 11 C 0.094 3.906 12 C -0.124 4.124 13 C 0.171 3.829 14 N -0.593 5.593 15 C -0.251 4.251 16 H 0.063 0.937 17 C 0.003 3.997 18 N -0.905 5.905 19 Si 0.903 3.097 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.289 1.289 23 C 0.150 3.850 24 C -0.159 4.159 25 H 0.048 0.952 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.058 0.942 36 H 0.337 0.663 37 H 0.068 0.932 38 H 0.050 0.950 39 H 0.052 0.948 40 H 0.089 0.911 41 H 0.015 0.985 42 H 0.253 0.747 43 H 0.015 0.985 44 H 0.050 0.950 45 H 0.057 0.943 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.968 7.846 3.356 18.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.108 4.108 4 H 0.084 0.916 5 C -0.150 4.150 6 C -0.163 4.163 7 C -0.152 4.152 8 C -0.025 4.025 9 H 0.055 0.945 10 N -0.313 5.313 11 C -0.016 4.016 12 C -0.163 4.163 13 C 0.045 3.955 14 N -0.316 5.316 15 C -0.381 4.381 16 H 0.081 0.919 17 C -0.195 4.195 18 N -0.550 5.550 19 Si 0.733 3.267 20 H -0.203 1.203 21 H -0.217 1.217 22 H -0.216 1.216 23 C 0.022 3.978 24 C -0.200 4.200 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.158 0.842 37 H 0.086 0.914 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.107 0.893 41 H 0.033 0.967 42 H 0.063 0.937 43 H 0.033 0.967 44 H 0.069 0.931 45 H 0.076 0.924 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -16.713 7.722 4.105 18.863 hybrid contribution 0.499 -0.420 -1.464 1.603 sum -16.214 7.302 2.641 17.978 Atomic orbital electron populations 1.21825 0.96589 1.01261 1.01342 1.21495 0.94560 0.96016 1.02795 1.21894 0.94636 0.96488 0.97771 0.91649 1.22390 0.97329 0.98257 0.97049 1.22457 0.95266 0.97941 1.00627 1.22421 0.97006 0.98157 0.97651 1.22108 0.93331 0.90134 0.96911 0.94463 1.61093 1.03805 1.10376 1.56041 1.21533 0.87168 0.99381 0.93470 1.22163 0.99370 0.95731 0.99086 1.20816 0.89290 1.01663 0.83747 1.44060 1.57678 1.25350 1.04476 1.19229 1.05812 1.17596 0.95452 0.91895 1.25142 0.96299 1.00591 0.97506 1.69989 1.26501 1.41536 1.16925 0.86206 0.79142 0.82172 0.79157 1.20303 1.21697 1.21563 1.20905 0.89734 0.90568 0.96566 1.22753 1.00221 0.99778 0.97231 0.93304 0.93016 0.92875 0.92227 0.90511 0.91376 0.92323 0.91796 0.91986 0.90381 0.92303 0.84177 0.91404 0.93073 0.92903 0.89284 0.96668 0.93702 0.96682 0.93100 0.92442 0.93883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.75 37.16 0.36 -0.98 16 2 C -0.11 -1.14 4.17 -26.73 -0.11 -1.25 16 3 C -0.09 -0.94 2.95 -89.45 -0.26 -1.20 16 4 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 5 C -0.11 -1.08 5.46 -25.02 -0.14 -1.21 16 6 C -0.13 -1.25 6.91 -24.74 -0.17 -1.42 16 7 C -0.11 -1.40 5.62 -25.07 -0.14 -1.54 16 8 C 0.09 1.07 3.10 -66.59 -0.21 0.87 16 9 H 0.04 0.51 7.24 -51.93 -0.38 0.13 16 10 N -0.68 -9.74 5.14 -98.52 -0.51 -10.25 16 11 C 0.09 1.62 2.28 -67.67 -0.15 1.46 16 12 C -0.12 -2.46 5.69 -26.62 -0.15 -2.61 16 13 C 0.17 4.18 5.26 -3.71 -0.02 4.16 16 14 N -0.59 -15.18 2.98 -172.05 -0.51 -15.69 16 15 C -0.25 -7.02 9.59 -15.06 -0.14 -7.16 16 16 H 0.06 1.74 7.85 -52.49 -0.41 1.32 16 17 C 0.00 0.08 5.04 -17.43 -0.09 0.00 16 18 N -0.90 -26.59 11.03 55.49 0.61 -25.97 16 19 Si 0.90 21.94 29.57 -169.99 -5.03 16.92 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 C 0.15 3.23 6.54 -3.49 -0.02 3.21 16 24 C -0.16 -2.84 5.34 -26.39 -0.14 -2.98 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.44 7.46 -51.93 -0.39 0.05 16 28 H 0.06 0.64 6.42 -51.93 -0.33 0.31 16 29 H 0.08 0.88 7.85 -51.93 -0.41 0.47 16 30 H 0.07 0.67 7.79 -51.93 -0.40 0.27 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 34 H 0.08 1.06 8.05 -51.93 -0.42 0.64 16 35 H 0.06 0.74 8.11 -51.93 -0.42 0.32 16 36 H 0.34 4.68 5.88 -39.29 -0.23 4.45 16 37 H 0.07 1.24 7.17 -51.93 -0.37 0.87 16 38 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.04 0.69 7.35 -51.93 -0.38 0.31 16 LS Contribution 340.77 15.07 5.14 5.14 Total: -1.00 -28.56 340.77 -10.34 -38.90 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -8.66 Total: 1.62 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: -1.39 Total: -10.65 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: -0.41 Total: -51.92 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -28.56 -10.34 -38.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610813575.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.903 kcal (2) G-P(sol) polarization free energy of solvation -28.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds