Wall clock time and date at job start Mon Mar 30 2020 01:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47192 * 2 1 4 4 H 1.08998 * 110.05320 * 304.86913 * 3 2 1 5 5 C 1.54366 * 110.05123 * 66.34902 * 3 2 1 6 6 C 1.54884 * 104.20049 * 142.90667 * 5 3 2 7 7 C 1.54886 * 102.74970 * 322.03323 * 6 5 3 8 8 C 1.53879 * 110.03055 * 183.46109 * 3 2 1 9 9 H 1.08996 * 110.03349 * 121.38210 * 8 3 2 10 10 N 1.46901 * 110.03230 * 359.97438 * 8 3 2 11 11 C 1.46901 * 110.99906 * 168.97091 * 10 8 3 12 12 C 1.53035 * 109.45947 * 155.00192 * 11 10 8 13 13 C 1.53187 * 109.31536 * 181.37293 * 12 11 10 14 14 N 1.46932 * 108.77754 * 305.36738 * 13 12 11 15 15 C 1.36936 * 120.63305 * 233.58423 * 14 13 12 16 16 H 1.07996 * 119.99681 * 149.50131 * 15 14 13 17 17 C 1.38809 * 119.99740 * 329.22026 * 15 14 13 18 18 N 1.31614 * 120.00441 * 348.93194 * 17 15 14 19 19 Si 1.86803 * 119.99711 * 168.92536 * 17 15 14 20 20 H 1.48502 * 109.47110 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46827 * 120.00408 * 19 17 15 22 22 H 1.48499 * 109.47517 * 240.00206 * 19 17 15 23 23 C 1.46930 * 118.73358 * 53.85685 * 14 13 12 24 24 C 1.53044 * 109.45225 * 275.06639 * 11 10 8 25 25 H 1.08997 * 109.46554 * 60.00174 * 1 2 3 26 26 H 1.08997 * 109.47166 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47204 * 300.00678 * 1 2 3 28 28 H 1.09000 * 109.47204 * 239.99322 * 2 1 3 29 29 H 1.09006 * 109.46658 * 120.00049 * 2 1 3 30 30 H 1.09004 * 110.50915 * 24.21879 * 5 3 2 31 31 H 1.09001 * 110.57406 * 261.63241 * 5 3 2 32 32 H 1.09004 * 110.76138 * 203.71287 * 6 5 3 33 33 H 1.09009 * 110.91261 * 80.42118 * 6 5 3 34 34 H 1.09002 * 110.48639 * 279.26277 * 7 6 5 35 35 H 1.08998 * 110.60012 * 156.67484 * 7 6 5 36 36 H 1.00902 * 110.99739 * 45.02758 * 10 8 3 37 37 H 1.09000 * 109.45821 * 35.03257 * 11 10 8 38 38 H 1.09002 * 109.49853 * 61.42546 * 12 11 10 39 39 H 1.08999 * 109.52643 * 301.34278 * 12 11 10 40 40 H 1.08999 * 109.59085 * 185.57956 * 13 12 11 41 41 H 1.08996 * 109.70575 * 65.22461 * 13 12 11 42 42 H 0.97001 * 120.00631 * 179.97438 * 18 17 15 43 43 H 1.09005 * 109.58669 * 65.93155 * 23 14 13 44 44 H 1.09007 * 109.57982 * 186.35048 * 23 14 13 45 45 H 1.09003 * 109.49278 * 298.57452 * 24 11 10 46 46 H 1.09000 * 109.49503 * 58.66552 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6127 1.9899 -0.8401 5 6 1.6680 2.1353 1.3283 6 6 2.8889 3.0352 1.6424 7 6 4.0839 2.1604 1.1891 8 6 3.5763 1.4583 -0.0873 9 1 3.8944 2.0129 -0.9700 10 7 4.0913 0.0837 -0.1437 11 6 5.5193 0.0703 -0.4883 12 6 6.1612 -1.2112 0.0481 13 6 7.6568 -1.2057 -0.2830 14 7 7.8202 -1.0088 -1.7299 15 6 8.5672 -1.8833 -2.4731 16 1 8.3185 -2.0609 -3.5090 17 6 9.6475 -2.5371 -1.8967 18 7 10.0894 -2.1624 -0.7150 19 14 10.4742 -3.9489 -2.7984 20 1 9.7931 -4.1721 -4.0990 21 1 11.9012 -3.6151 -3.0382 22 1 10.3859 -5.1816 -1.9750 23 6 7.1718 0.1477 -2.3630 24 6 5.6771 0.1239 -2.0096 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 1.5254 1.3969 2.1174 31 1 0.7695 2.7403 1.2062 32 1 2.9482 3.2471 2.7100 33 1 2.8480 3.9608 1.0681 34 1 4.3315 1.4260 1.9556 35 1 4.9505 2.7819 0.9637 36 1 3.5578 -0.4760 -0.7920 37 1 6.0087 0.9359 -0.0418 38 1 5.6889 -2.0767 -0.4167 39 1 6.0280 -1.2607 1.1287 40 1 8.0991 -2.1584 0.0083 41 1 8.1491 -0.3950 0.2539 42 1 10.8441 -2.6195 -0.3120 43 1 7.6232 1.0680 -1.9923 44 1 7.2941 0.0883 -3.4446 45 1 5.2092 -0.7542 -2.4549 46 1 5.1992 1.0253 -2.3934 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610813575.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:29 Heat of formation + Delta-G solvation = -15.028772 kcal Electronic energy + Delta-G solvation = -21450.423570 eV Core-core repulsion = 18566.619951 eV Total energy + Delta-G solvation = -2883.803620 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.49685 -38.87909 -35.88570 -33.95478 -33.60008 -31.73898 -30.87462 -28.40877 -27.81655 -26.07130 -23.85438 -23.69868 -23.07160 -21.49375 -20.68795 -19.72624 -18.74838 -17.03129 -16.82039 -16.51408 -16.01839 -15.44947 -15.32392 -15.19598 -15.02599 -14.75304 -14.32501 -14.06505 -13.90589 -13.35600 -13.20147 -13.02748 -12.78957 -12.63162 -12.57799 -12.18214 -12.08847 -11.99140 -11.90214 -11.83514 -11.75436 -11.73368 -11.48066 -11.39361 -11.25347 -11.16518 -11.06074 -10.56612 -9.17884 -8.64879 -7.87056 -5.38249 1.45650 1.46617 1.57581 2.49966 3.22030 3.33105 3.68992 3.69490 3.74874 3.97572 4.01925 4.18230 4.37881 4.39409 4.40287 4.50744 4.55662 4.58473 4.72044 4.72882 4.76525 4.84361 4.87332 4.90960 4.96878 5.02448 5.07601 5.11234 5.16393 5.22678 5.27624 5.29133 5.31816 5.34437 5.36528 5.48802 5.51897 5.53475 5.63873 5.65261 5.76700 6.26964 6.41202 6.61461 7.15241 7.84842 8.38022 9.18744 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.034755 B = 0.004116 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.443331 B = 6800.938613 C = 7079.158360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C -0.084 4.084 4 H 0.075 0.925 5 C -0.108 4.108 6 C -0.120 4.120 7 C -0.117 4.117 8 C 0.083 3.917 9 H 0.033 0.967 10 N -0.675 5.675 11 C 0.107 3.893 12 C -0.109 4.109 13 C 0.179 3.821 14 N -0.611 5.611 15 C -0.265 4.265 16 H 0.065 0.935 17 C -0.050 4.050 18 N -0.937 5.937 19 Si 0.970 3.030 20 H -0.266 1.266 21 H -0.291 1.291 22 H -0.289 1.289 23 C 0.145 3.855 24 C -0.144 4.144 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.050 0.950 36 H 0.343 0.657 37 H 0.059 0.941 38 H 0.046 0.954 39 H 0.061 0.939 40 H 0.054 0.946 41 H -0.008 1.008 42 H 0.250 0.750 43 H 0.010 0.990 44 H 0.051 0.949 45 H 0.055 0.945 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.167 8.419 2.762 21.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.146 4.146 3 C -0.103 4.103 4 H 0.094 0.906 5 C -0.146 4.146 6 C -0.157 4.157 7 C -0.155 4.155 8 C -0.027 4.027 9 H 0.051 0.949 10 N -0.308 5.308 11 C -0.003 4.003 12 C -0.148 4.148 13 C 0.053 3.947 14 N -0.334 5.334 15 C -0.395 4.395 16 H 0.082 0.918 17 C -0.245 4.245 18 N -0.583 5.583 19 Si 0.798 3.202 20 H -0.191 1.191 21 H -0.218 1.218 22 H -0.215 1.215 23 C 0.018 3.982 24 C -0.184 4.184 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.164 0.836 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.010 0.990 42 H 0.059 0.941 43 H 0.028 0.972 44 H 0.070 0.930 45 H 0.074 0.926 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -18.948 8.313 3.500 20.985 hybrid contribution 1.187 -0.547 -1.274 1.825 sum -17.761 7.766 2.226 19.512 Atomic orbital electron populations 1.21783 0.95198 1.01657 1.01972 1.21440 0.95764 0.95618 1.01818 1.21881 0.92748 0.96896 0.98788 0.90646 1.22373 0.97770 0.98190 0.96262 1.22441 0.94155 0.97879 1.01263 1.22415 0.97874 0.98120 0.97126 1.22213 0.94993 0.88673 0.96816 0.94892 1.61003 1.01954 1.11888 1.55947 1.21237 0.88934 0.97300 0.92862 1.21915 0.96140 0.97125 0.99667 1.20584 0.91920 0.98803 0.83364 1.44309 1.57979 1.26423 1.04727 1.19556 1.06056 1.18155 0.95775 0.91774 1.25920 0.97096 1.03111 0.98357 1.70157 1.26948 1.42754 1.18406 0.85164 0.77812 0.78871 0.78344 1.19056 1.21757 1.21540 1.21056 0.91831 0.88918 0.96353 1.22581 0.97309 1.00971 0.97563 0.92652 0.92819 0.92227 0.92760 0.91906 0.91690 0.90549 0.91019 0.91058 0.91987 0.93122 0.83556 0.92255 0.93545 0.92081 0.92738 0.99015 0.94076 0.97168 0.93015 0.92591 0.91230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.75 71.98 0.70 -1.51 16 2 C -0.11 -1.99 4.17 30.59 0.13 -1.86 16 3 C -0.08 -1.55 2.95 -10.04 -0.03 -1.58 16 4 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 5 C -0.11 -1.76 5.46 31.70 0.17 -1.59 16 6 C -0.12 -2.10 6.91 31.88 0.22 -1.88 16 7 C -0.12 -2.72 5.62 31.67 0.18 -2.54 16 8 C 0.08 1.93 3.10 45.64 0.14 2.07 16 9 H 0.03 0.81 7.24 -2.39 -0.02 0.80 16 10 N -0.68 -18.33 5.14 -465.62 -2.39 -20.73 16 11 C 0.11 3.60 2.28 44.94 0.10 3.70 16 12 C -0.11 -4.35 5.69 30.67 0.17 -4.17 16 13 C 0.18 9.07 5.26 86.36 0.45 9.52 16 14 N -0.61 -31.82 2.98 -698.26 -2.08 -33.90 16 15 C -0.27 -15.01 9.59 84.03 0.81 -14.21 16 16 H 0.06 3.54 7.85 -2.91 -0.02 3.52 16 17 C -0.05 -2.83 5.04 84.86 0.43 -2.40 16 18 N -0.94 -56.64 11.03 21.65 0.24 -56.40 16 19 Si 0.97 45.63 29.57 68.60 2.03 47.66 16 20 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 21 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 22 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 23 C 0.14 6.23 6.54 86.50 0.57 6.79 16 24 C -0.14 -4.93 5.34 30.82 0.16 -4.76 16 25 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.06 0.81 7.46 -2.39 -0.02 0.80 16 28 H 0.05 1.05 6.42 -2.39 -0.02 1.04 16 29 H 0.06 1.34 7.85 -2.38 -0.02 1.32 16 30 H 0.06 1.12 7.79 -2.38 -0.02 1.10 16 31 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 34 H 0.06 1.64 8.05 -2.39 -0.02 1.62 16 35 H 0.05 1.24 8.11 -2.39 -0.02 1.22 16 36 H 0.34 8.86 5.88 -89.69 -0.53 8.33 16 37 H 0.06 2.14 7.17 -2.39 -0.02 2.12 16 38 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.05 3.12 6.07 -2.39 -0.01 3.10 16 41 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 42 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 43 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 44 H 0.05 2.18 7.93 -2.38 -0.02 2.16 16 45 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 46 H 0.07 2.05 7.35 -2.39 -0.02 2.03 16 Total: -1.00 -62.00 340.77 2.39 -59.61 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: 0.39 Total: 18.18 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: 4.21 Total: -14.42 kcal Atomic # 7 Polarization: -106.79 SS G_CDS: -4.24 Total: -111.03 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -62.00 2.39 -59.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610813575.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.582 kcal (2) G-P(sol) polarization free energy of solvation -62.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds