Wall clock time and date at job start Mon Mar 30 2020 00:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 110.01393 * 2 1 4 4 C 1.54265 * 110.03758 * 238.55687 * 2 1 3 5 5 C 1.54890 * 104.19724 * 217.10799 * 4 2 1 6 6 C 1.54892 * 102.74900 * 37.93709 * 5 4 2 7 7 C 1.53878 * 110.03297 * 121.38322 * 2 1 3 8 8 H 1.08996 * 110.03737 * 238.57443 * 7 2 1 9 9 N 1.46902 * 110.03122 * 359.95822 * 7 2 1 10 10 C 1.46900 * 110.99918 * 199.04308 * 9 7 2 11 11 C 1.53043 * 109.45877 * 275.02599 * 10 9 7 12 12 C 1.53196 * 109.30883 * 178.60215 * 11 10 9 13 13 N 1.46927 * 108.76718 * 54.65626 * 12 11 10 14 14 C 1.36931 * 120.62963 * 126.36194 * 13 12 11 15 15 H 1.08001 * 119.99930 * 328.88589 * 14 13 12 16 16 C 1.38812 * 119.99981 * 148.89033 * 14 13 12 17 17 N 1.31617 * 119.99691 * 348.97911 * 16 14 13 18 18 Si 1.86798 * 119.99985 * 168.98040 * 16 14 13 19 19 H 1.48493 * 109.47343 * 59.99828 * 18 16 14 20 20 H 1.48499 * 109.47170 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47242 * 299.99712 * 18 16 14 22 22 C 1.46925 * 118.73742 * 306.38102 * 13 12 11 23 23 C 1.53044 * 109.45918 * 154.97076 * 10 9 7 24 24 H 1.09002 * 109.47548 * 305.59806 * 1 2 3 25 25 H 1.09000 * 109.47294 * 65.60545 * 1 2 3 26 26 H 1.08999 * 109.47036 * 185.59898 * 1 2 3 27 27 H 1.09001 * 109.46986 * 181.39415 * 3 2 1 28 28 H 1.08999 * 109.46698 * 301.38461 * 3 2 1 29 29 H 1.09000 * 109.47254 * 61.38893 * 3 2 1 30 30 H 1.09006 * 110.47870 * 335.78410 * 4 2 1 31 31 H 1.08994 * 110.48577 * 98.42187 * 4 2 1 32 32 H 1.08993 * 110.75565 * 156.25438 * 5 4 2 33 33 H 1.09003 * 110.74814 * 279.44165 * 5 4 2 34 34 H 1.08997 * 110.48269 * 203.38460 * 6 5 4 35 35 H 1.08996 * 110.48696 * 80.74145 * 6 5 4 36 36 H 1.00904 * 110.99820 * 322.99563 * 9 7 2 37 37 H 1.08998 * 109.45972 * 34.99859 * 10 9 7 38 38 H 1.08999 * 109.49499 * 298.56405 * 11 10 9 39 39 H 1.08993 * 109.49813 * 58.66258 * 11 10 9 40 40 H 1.08996 * 109.59503 * 294.86279 * 12 11 10 41 41 H 1.08998 * 109.69827 * 174.50652 * 12 11 10 42 42 H 0.97004 * 119.99877 * 180.02562 * 17 16 14 43 43 H 1.08997 * 109.59016 * 293.82442 * 22 13 12 44 44 H 1.08999 * 109.70436 * 173.46396 * 22 13 12 45 45 H 1.08996 * 109.49558 * 301.33775 * 23 10 9 46 46 H 1.09000 * 109.49263 * 61.40101 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0536 1.4377 0.0000 4 6 2.0585 -0.7560 -1.2365 5 6 3.3137 -1.5011 -0.7183 6 6 2.8874 -1.9402 0.7046 7 6 2.0571 -0.7528 1.2342 8 1 2.6866 -0.0944 1.8326 9 7 0.9328 -1.2444 2.0419 10 6 1.3646 -1.5554 3.4111 11 6 1.9334 -2.9755 3.4561 12 6 2.4146 -3.2837 4.8775 13 7 1.3067 -3.0476 5.8133 14 6 0.9136 -4.0237 6.6895 15 1 1.0115 -5.0644 6.4180 16 6 0.3892 -3.6755 7.9267 17 7 0.4677 -2.4311 8.3481 18 14 -0.4277 -4.9731 8.9936 19 1 0.5517 -6.0442 9.3076 20 1 -0.9019 -4.3498 10.2552 21 1 -1.5831 -5.5568 8.2657 22 6 0.6283 -1.7446 5.7905 23 6 0.1673 -1.4535 4.3589 24 1 -0.3634 0.5982 0.8356 25 1 -0.3634 0.4244 -0.9359 26 1 -0.3633 -1.0228 0.1003 27 1 3.1433 1.4274 -0.0250 28 1 1.6751 1.9622 -0.8773 29 1 1.7156 1.9475 0.9022 30 1 1.3143 -1.4667 -1.5959 31 1 2.3297 -0.0545 -2.0253 32 1 3.5326 -2.3684 -1.3410 33 1 4.1718 -0.8300 -0.6777 34 1 3.7637 -2.1029 1.3321 35 1 2.2772 -2.8422 0.6586 36 1 0.1723 -0.5813 2.0444 37 1 2.1331 -0.8465 3.7194 38 1 1.1580 -3.6870 3.1721 39 1 2.7713 -3.0540 2.7635 40 1 3.2510 -2.6319 5.1296 41 1 2.7308 -4.3248 4.9408 42 1 0.1016 -2.1878 9.2128 43 1 1.3190 -0.9672 6.1171 44 1 -0.2356 -1.7684 6.4548 45 1 -0.2518 -0.4486 4.3088 46 1 -0.5914 -2.1792 4.0658 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610813800.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:42 Heat of formation + Delta-G solvation = 5.582179 kcal Electronic energy + Delta-G solvation = -21679.773779 eV Core-core repulsion = 18796.863917 eV Total energy + Delta-G solvation = -2882.909862 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.71717 -37.39203 -34.28287 -32.36612 -31.77988 -30.04718 -29.13012 -27.56813 -26.63240 -24.71321 -23.81543 -22.07941 -21.29113 -20.37551 -19.09795 -18.27199 -16.70965 -15.71665 -15.43036 -15.05130 -14.77144 -14.21541 -13.80278 -13.50549 -13.41696 -13.11128 -13.02984 -12.87563 -12.51460 -12.19382 -12.05401 -11.62683 -11.37557 -11.26840 -11.05628 -10.97063 -10.83022 -10.64164 -10.58231 -10.54781 -10.50287 -10.38872 -10.20377 -10.08182 -9.86564 -9.50972 -9.29521 -8.42799 -8.04048 -6.55208 -5.73008 -3.19832 3.41497 3.46326 3.47867 4.41343 4.48025 4.53733 4.57291 4.87942 5.23860 5.28430 5.30712 5.40241 5.45054 5.52000 5.52856 5.57632 5.65760 5.68913 5.75738 5.77932 5.88143 5.93599 5.94261 5.99539 6.05177 6.14436 6.21970 6.25062 6.26629 6.38280 6.43228 6.45839 6.64078 6.68515 6.73769 6.76885 6.92119 7.14049 7.45418 7.54168 7.73866 7.78077 7.84577 8.53763 9.28503 9.90667 10.49385 11.35211 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.039449 B = 0.004233 C = 0.004052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.598338 B = 6613.318726 C = 6908.893801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.071 4.071 3 C -0.139 4.139 4 C -0.110 4.110 5 C -0.126 4.126 6 C -0.112 4.112 7 C 0.092 3.908 8 H 0.040 0.960 9 N -0.684 5.684 10 C 0.096 3.904 11 C -0.120 4.120 12 C 0.144 3.856 13 N -0.591 5.591 14 C -0.250 4.250 15 H 0.063 0.937 16 C 0.003 3.997 17 N -0.907 5.907 18 Si 0.904 3.096 19 H -0.283 1.283 20 H -0.291 1.291 21 H -0.284 1.284 22 C 0.175 3.825 23 C -0.141 4.141 24 H 0.051 0.949 25 H 0.049 0.951 26 H 0.074 0.926 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.338 0.662 37 H 0.032 0.968 38 H 0.061 0.939 39 H 0.052 0.948 40 H 0.012 0.988 41 H 0.052 0.948 42 H 0.253 0.747 43 H 0.014 0.986 44 H 0.089 0.911 45 H 0.042 0.958 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.653 5.958 -17.742 18.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.071 4.071 3 C -0.197 4.197 4 C -0.147 4.147 5 C -0.164 4.164 6 C -0.150 4.150 7 C -0.018 4.018 8 H 0.058 0.942 9 N -0.317 5.317 10 C -0.013 4.013 11 C -0.159 4.159 12 C 0.017 3.983 13 N -0.314 5.314 14 C -0.380 4.380 15 H 0.081 0.919 16 C -0.196 4.196 17 N -0.552 5.552 18 Si 0.734 3.266 19 H -0.209 1.209 20 H -0.217 1.217 21 H -0.210 1.210 22 C 0.049 3.951 23 C -0.181 4.181 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.093 0.907 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.160 0.840 37 H 0.050 0.950 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.030 0.970 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.032 0.968 44 H 0.107 0.893 45 H 0.060 0.940 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.642 5.387 -17.768 18.754 hybrid contribution -0.262 0.381 1.035 1.133 sum 2.380 5.767 -16.734 17.859 Atomic orbital electron populations 1.21845 0.94287 1.02953 1.00648 1.21289 0.95928 0.94744 0.95137 1.21930 1.00852 0.95451 1.01455 1.22406 0.97385 0.98589 0.96339 1.22480 0.97380 0.99606 0.96915 1.22516 0.98861 0.98824 0.94842 1.22222 0.92015 0.94472 0.93088 0.94162 1.60959 1.09181 1.48657 1.12937 1.21502 0.96624 0.96806 0.86396 1.22113 0.99807 0.95871 0.98150 1.20947 0.90329 0.98345 0.88668 1.43990 1.34036 1.13272 1.40135 1.19154 1.37181 0.87865 0.93787 0.91931 1.25143 1.01656 0.96411 0.96341 1.69970 1.48545 1.16778 1.19913 0.86343 0.79542 0.80995 0.79691 1.20900 1.21651 1.21004 1.20727 0.97449 0.86293 0.90658 1.22410 0.97053 0.99424 0.99206 0.92982 0.93213 0.90715 0.92709 0.92755 0.92885 0.91420 0.92145 0.91819 0.92024 0.92120 0.90211 0.84017 0.94996 0.92041 0.92983 0.96984 0.92914 0.93648 0.96786 0.89320 0.93955 0.91988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 7.05 37.16 0.26 -1.18 16 2 C -0.07 -0.74 0.94 -153.39 -0.14 -0.89 16 3 C -0.14 -1.34 8.15 37.16 0.30 -1.04 16 4 C -0.11 -1.06 5.90 -25.07 -0.15 -1.21 16 5 C -0.13 -1.26 6.91 -24.74 -0.17 -1.43 16 6 C -0.11 -1.38 4.68 -25.07 -0.12 -1.50 16 7 C 0.09 1.18 2.86 -66.59 -0.19 0.99 16 8 H 0.04 0.56 7.09 -51.93 -0.37 0.20 16 9 N -0.68 -9.96 5.21 -98.52 -0.51 -10.48 16 10 C 0.10 1.68 2.45 -67.67 -0.17 1.52 16 11 C -0.12 -2.21 5.29 -26.61 -0.14 -2.35 16 12 C 0.14 3.16 6.52 -3.71 -0.02 3.13 16 13 N -0.59 -15.26 2.99 -172.32 -0.51 -15.78 16 14 C -0.25 -7.02 9.58 -15.06 -0.14 -7.17 16 15 H 0.06 1.73 7.85 -52.49 -0.41 1.31 16 16 C 0.00 0.08 5.04 -17.43 -0.09 -0.01 16 17 N -0.91 -26.70 11.05 55.49 0.61 -26.09 16 18 Si 0.90 22.01 29.57 -169.99 -5.03 16.98 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 22 C 0.18 4.29 5.25 -3.71 -0.02 4.27 16 23 C -0.14 -2.78 5.36 -26.61 -0.14 -2.92 16 24 H 0.05 0.53 7.06 -51.93 -0.37 0.17 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.86 7.43 -51.93 -0.39 0.47 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.67 7.85 -51.93 -0.41 0.26 16 31 H 0.06 0.52 7.84 -51.93 -0.41 0.11 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.77 7.39 -51.93 -0.38 0.38 16 35 H 0.08 1.08 7.77 -51.93 -0.40 0.68 16 36 H 0.34 4.68 5.51 -39.29 -0.22 4.47 16 37 H 0.03 0.60 7.50 -51.93 -0.39 0.21 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.05 0.86 5.40 -51.93 -0.28 0.58 16 40 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.05 1.13 7.93 -51.93 -0.41 0.72 16 42 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 43 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.09 2.42 6.10 -51.93 -0.32 2.10 16 45 H 0.04 0.75 8.10 -51.93 -0.42 0.33 16 46 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 336.69 15.07 5.07 5.07 Total: -1.00 -28.84 336.69 -9.83 -38.68 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -8.53 Total: 1.39 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -0.93 Total: -9.79 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: -0.41 Total: -52.34 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.98 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.84 -9.83 -38.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610813800.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.259 kcal (2) G-P(sol) polarization free energy of solvation -28.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds