Wall clock time and date at job start Mon Mar 30 2020 00:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 110.01393 * 2 1 4 4 C 1.54265 * 110.03758 * 238.55687 * 2 1 3 5 5 C 1.54890 * 104.19724 * 217.10799 * 4 2 1 6 6 C 1.54892 * 102.74900 * 37.93709 * 5 4 2 7 7 C 1.53878 * 110.03297 * 121.38322 * 2 1 3 8 8 H 1.08996 * 110.03737 * 238.57443 * 7 2 1 9 9 N 1.46902 * 110.03122 * 359.95822 * 7 2 1 10 10 C 1.46900 * 110.99918 * 199.04308 * 9 7 2 11 11 C 1.53043 * 109.45877 * 275.02599 * 10 9 7 12 12 C 1.53196 * 109.30883 * 178.60215 * 11 10 9 13 13 N 1.46927 * 108.76718 * 54.65626 * 12 11 10 14 14 C 1.36931 * 120.62963 * 126.36194 * 13 12 11 15 15 H 1.08001 * 119.99930 * 328.88589 * 14 13 12 16 16 C 1.38812 * 119.99981 * 148.89033 * 14 13 12 17 17 N 1.31617 * 119.99691 * 348.97911 * 16 14 13 18 18 Si 1.86798 * 119.99985 * 168.98040 * 16 14 13 19 19 H 1.48493 * 109.47343 * 59.99828 * 18 16 14 20 20 H 1.48499 * 109.47170 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47242 * 299.99712 * 18 16 14 22 22 C 1.46925 * 118.73742 * 306.38102 * 13 12 11 23 23 C 1.53044 * 109.45918 * 154.97076 * 10 9 7 24 24 H 1.09002 * 109.47548 * 305.59806 * 1 2 3 25 25 H 1.09000 * 109.47294 * 65.60545 * 1 2 3 26 26 H 1.08999 * 109.47036 * 185.59898 * 1 2 3 27 27 H 1.09001 * 109.46986 * 181.39415 * 3 2 1 28 28 H 1.08999 * 109.46698 * 301.38461 * 3 2 1 29 29 H 1.09000 * 109.47254 * 61.38893 * 3 2 1 30 30 H 1.09006 * 110.47870 * 335.78410 * 4 2 1 31 31 H 1.08994 * 110.48577 * 98.42187 * 4 2 1 32 32 H 1.08993 * 110.75565 * 156.25438 * 5 4 2 33 33 H 1.09003 * 110.74814 * 279.44165 * 5 4 2 34 34 H 1.08997 * 110.48269 * 203.38460 * 6 5 4 35 35 H 1.08996 * 110.48696 * 80.74145 * 6 5 4 36 36 H 1.00904 * 110.99820 * 322.99563 * 9 7 2 37 37 H 1.08998 * 109.45972 * 34.99859 * 10 9 7 38 38 H 1.08999 * 109.49499 * 298.56405 * 11 10 9 39 39 H 1.08993 * 109.49813 * 58.66258 * 11 10 9 40 40 H 1.08996 * 109.59503 * 294.86279 * 12 11 10 41 41 H 1.08998 * 109.69827 * 174.50652 * 12 11 10 42 42 H 0.97004 * 119.99877 * 180.02562 * 17 16 14 43 43 H 1.08997 * 109.59016 * 293.82442 * 22 13 12 44 44 H 1.08999 * 109.70436 * 173.46396 * 22 13 12 45 45 H 1.08996 * 109.49558 * 301.33775 * 23 10 9 46 46 H 1.09000 * 109.49263 * 61.40101 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0536 1.4377 0.0000 4 6 2.0585 -0.7560 -1.2365 5 6 3.3137 -1.5011 -0.7183 6 6 2.8874 -1.9402 0.7046 7 6 2.0571 -0.7528 1.2342 8 1 2.6866 -0.0944 1.8326 9 7 0.9328 -1.2444 2.0419 10 6 1.3646 -1.5554 3.4111 11 6 1.9334 -2.9755 3.4561 12 6 2.4146 -3.2837 4.8775 13 7 1.3067 -3.0476 5.8133 14 6 0.9136 -4.0237 6.6895 15 1 1.0115 -5.0644 6.4180 16 6 0.3892 -3.6755 7.9267 17 7 0.4677 -2.4311 8.3481 18 14 -0.4277 -4.9731 8.9936 19 1 0.5517 -6.0442 9.3076 20 1 -0.9019 -4.3498 10.2552 21 1 -1.5831 -5.5568 8.2657 22 6 0.6283 -1.7446 5.7905 23 6 0.1673 -1.4535 4.3589 24 1 -0.3634 0.5982 0.8356 25 1 -0.3634 0.4244 -0.9359 26 1 -0.3633 -1.0228 0.1003 27 1 3.1433 1.4274 -0.0250 28 1 1.6751 1.9622 -0.8773 29 1 1.7156 1.9475 0.9022 30 1 1.3143 -1.4667 -1.5959 31 1 2.3297 -0.0545 -2.0253 32 1 3.5326 -2.3684 -1.3410 33 1 4.1718 -0.8300 -0.6777 34 1 3.7637 -2.1029 1.3321 35 1 2.2772 -2.8422 0.6586 36 1 0.1723 -0.5813 2.0444 37 1 2.1331 -0.8465 3.7194 38 1 1.1580 -3.6870 3.1721 39 1 2.7713 -3.0540 2.7635 40 1 3.2510 -2.6319 5.1296 41 1 2.7308 -4.3248 4.9408 42 1 0.1016 -2.1878 9.2128 43 1 1.3190 -0.9672 6.1171 44 1 -0.2356 -1.7684 6.4548 45 1 -0.2518 -0.4486 4.3088 46 1 -0.5914 -2.1792 4.0658 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610813800.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:41 Heat of formation + Delta-G solvation = -10.025394 kcal Electronic energy + Delta-G solvation = -21680.450574 eV Core-core repulsion = 18796.863917 eV Total energy + Delta-G solvation = -2883.586657 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.75277 -38.98566 -35.90246 -33.68961 -33.14278 -31.73359 -30.85704 -28.38842 -27.82372 -26.37745 -24.90001 -23.79335 -22.99176 -21.33553 -20.74821 -19.30927 -18.65290 -16.98217 -16.63094 -16.49803 -16.09958 -15.64078 -15.31698 -15.23020 -14.75320 -14.42446 -14.17862 -14.07289 -13.82622 -13.60891 -13.12507 -13.02884 -12.86264 -12.62439 -12.51908 -12.47026 -12.27380 -12.12789 -11.93070 -11.89663 -11.72750 -11.57903 -11.44386 -11.33206 -11.31301 -11.16458 -10.91097 -10.54743 -9.28242 -8.63789 -7.86978 -5.37885 1.46512 1.49032 1.55796 2.50852 3.19342 3.32792 3.60940 3.69635 3.72860 3.99849 4.07294 4.13225 4.41369 4.46907 4.47617 4.48246 4.55581 4.59133 4.61253 4.71497 4.80224 4.82186 4.88052 4.96592 4.98667 4.99748 5.08245 5.12654 5.13681 5.18788 5.20239 5.27943 5.30072 5.38577 5.42154 5.46043 5.52789 5.54121 5.61578 5.63830 5.75210 6.27854 6.41213 6.59572 7.15557 7.85187 8.38859 9.18905 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.039449 B = 0.004233 C = 0.004052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.598338 B = 6613.318726 C = 6908.893801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.068 4.068 3 C -0.137 4.137 4 C -0.106 4.106 5 C -0.120 4.120 6 C -0.115 4.115 7 C 0.088 3.912 8 H 0.030 0.970 9 N -0.677 5.677 10 C 0.107 3.893 11 C -0.104 4.104 12 C 0.140 3.860 13 N -0.610 5.610 14 C -0.266 4.266 15 H 0.064 0.936 16 C -0.049 4.049 17 N -0.937 5.937 18 Si 0.971 3.029 19 H -0.275 1.275 20 H -0.292 1.292 21 H -0.277 1.277 22 C 0.182 3.818 23 C -0.127 4.127 24 H 0.049 0.951 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.045 0.955 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.053 0.947 35 H 0.067 0.933 36 H 0.344 0.656 37 H 0.023 0.977 38 H 0.051 0.949 39 H 0.075 0.925 40 H 0.008 0.992 41 H 0.053 0.947 42 H 0.250 0.750 43 H -0.008 1.008 44 H 0.056 0.944 45 H 0.063 0.937 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.666 6.021 -19.852 20.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.068 4.068 3 C -0.195 4.195 4 C -0.144 4.144 5 C -0.158 4.158 6 C -0.153 4.153 7 C -0.021 4.021 8 H 0.048 0.952 9 N -0.312 5.312 10 C -0.003 4.003 11 C -0.144 4.144 12 C 0.014 3.986 13 N -0.334 5.334 14 C -0.397 4.397 15 H 0.081 0.919 16 C -0.244 4.244 17 N -0.583 5.583 18 Si 0.799 3.201 19 H -0.201 1.201 20 H -0.218 1.218 21 H -0.203 1.203 22 C 0.056 3.944 23 C -0.166 4.166 24 H 0.068 0.932 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.167 0.833 37 H 0.041 0.959 38 H 0.070 0.930 39 H 0.093 0.907 40 H 0.026 0.974 41 H 0.071 0.929 42 H 0.059 0.941 43 H 0.010 0.990 44 H 0.074 0.926 45 H 0.082 0.918 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.665 5.448 -19.915 20.817 hybrid contribution -0.217 0.376 1.672 1.727 sum 2.447 5.824 -18.243 19.306 Atomic orbital electron populations 1.21814 0.94054 1.02244 1.01444 1.21286 0.96089 0.95174 0.94293 1.21911 1.01007 0.94704 1.01847 1.22400 0.97033 0.98728 0.96210 1.22456 0.97819 1.00201 0.95329 1.22493 0.98277 0.98075 0.96433 1.22334 0.91320 0.94857 0.93633 0.95203 1.60913 1.10048 1.49344 1.10876 1.21246 0.95215 0.96080 0.87726 1.21921 1.00252 0.96109 0.96093 1.21085 0.89328 0.98314 0.89834 1.44257 1.35371 1.13152 1.40591 1.19491 1.37219 0.88521 0.94438 0.91858 1.25918 1.02464 0.98390 0.97614 1.70142 1.49513 1.18604 1.20079 0.85294 0.78633 0.78548 0.77664 1.20061 1.21813 1.20306 1.20520 0.95542 0.85426 0.92961 1.22169 0.97650 1.00315 0.96488 0.93162 0.91656 0.91948 0.92503 0.91245 0.93581 0.91535 0.90485 0.90839 0.91257 0.92790 0.91454 0.83325 0.95910 0.93030 0.90657 0.97424 0.92881 0.94067 0.99024 0.92588 0.91845 0.92733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 7.05 71.98 0.51 -2.01 16 2 C -0.07 -1.27 0.94 -51.46 -0.05 -1.31 16 3 C -0.14 -2.27 8.15 71.98 0.59 -1.69 16 4 C -0.11 -1.74 5.90 31.67 0.19 -1.55 16 5 C -0.12 -2.09 6.91 31.89 0.22 -1.87 16 6 C -0.11 -2.61 4.68 31.67 0.15 -2.47 16 7 C 0.09 2.11 2.86 45.64 0.13 2.24 16 8 H 0.03 0.79 7.09 -2.39 -0.02 0.78 16 9 N -0.68 -18.84 5.21 -465.61 -2.43 -21.27 16 10 C 0.11 3.70 2.45 44.94 0.11 3.81 16 11 C -0.10 -3.79 5.29 30.67 0.16 -3.63 16 12 C 0.14 6.20 6.52 86.36 0.56 6.76 16 13 N -0.61 -32.14 2.99 -699.10 -2.09 -34.23 16 14 C -0.27 -15.21 9.58 84.03 0.81 -14.40 16 15 H 0.06 3.52 7.85 -2.91 -0.02 3.50 16 16 C -0.05 -2.78 5.04 84.86 0.43 -2.36 16 17 N -0.94 -56.63 11.05 21.65 0.24 -56.39 16 18 Si 0.97 45.73 29.57 68.60 2.03 47.75 16 19 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 20 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 21 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 22 C 0.18 9.17 5.25 86.36 0.45 9.62 16 23 C -0.13 -4.98 5.36 30.67 0.16 -4.82 16 24 H 0.05 0.93 7.06 -2.39 -0.02 0.91 16 25 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.06 1.30 7.43 -2.39 -0.02 1.29 16 27 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.07 1.12 7.85 -2.38 -0.02 1.10 16 31 H 0.08 1.04 7.84 -2.39 -0.02 1.02 16 32 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.05 1.28 7.39 -2.39 -0.02 1.27 16 35 H 0.07 1.71 7.77 -2.39 -0.02 1.70 16 36 H 0.34 8.98 5.51 -89.69 -0.49 8.49 16 37 H 0.02 0.85 7.50 -2.39 -0.02 0.83 16 38 H 0.05 1.99 8.14 -2.39 -0.02 1.98 16 39 H 0.08 2.39 5.40 -2.39 -0.01 2.38 16 40 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 41 H 0.05 2.29 7.93 -2.39 -0.02 2.27 16 42 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 43 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 44 H 0.06 3.17 6.10 -2.39 -0.01 3.16 16 45 H 0.06 2.21 8.10 -2.39 -0.02 2.19 16 46 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -62.54 336.69 2.60 -59.94 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 0.43 Total: 17.85 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: 4.42 Total: -13.67 kcal Atomic # 7 Polarization: -107.61 SS G_CDS: -4.28 Total: -111.88 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Total: -62.54 2.60 -59.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610813800.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.917 kcal (2) G-P(sol) polarization free energy of solvation -62.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds