Wall clock time and date at job start Mon Mar 30 2020 01:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52990 * 109.46834 * 2 1 4 4 C 1.52993 * 109.47181 * 120.00497 * 2 1 3 5 5 H 1.09005 * 109.47390 * 179.11493 * 4 2 1 6 6 N 1.46902 * 109.47507 * 59.11565 * 4 2 1 7 7 C 1.46892 * 111.00076 * 85.94023 * 6 4 2 8 8 C 1.53043 * 109.46188 * 206.93058 * 7 6 4 9 9 C 1.53196 * 109.31693 * 178.61609 * 8 7 6 10 10 N 1.46921 * 108.89023 * 54.56023 * 9 8 7 11 11 C 1.36942 * 120.63014 * 126.46457 * 10 9 8 12 12 H 1.08001 * 119.99961 * 328.23401 * 11 10 9 13 13 C 1.38808 * 119.99930 * 148.22471 * 11 10 9 14 14 N 1.31621 * 120.00450 * 343.65524 * 13 11 10 15 15 Si 1.86807 * 119.99705 * 163.64686 * 13 11 10 16 16 H 1.48499 * 109.46836 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47010 * 120.00206 * 15 13 11 18 18 H 1.48496 * 109.47436 * 240.00124 * 15 13 11 19 19 C 1.46960 * 118.72010 * 306.64059 * 10 9 8 20 20 C 1.53046 * 109.46220 * 86.86273 * 7 6 4 21 21 C 1.53002 * 109.47294 * 299.11493 * 4 2 1 22 22 C 1.53007 * 117.49654 * 248.75128 * 21 4 2 23 23 C 1.52998 * 117.50244 * 180.09139 * 21 4 2 24 24 H 1.08997 * 109.46814 * 299.99221 * 1 2 3 25 25 H 1.08994 * 109.47276 * 60.00059 * 1 2 3 26 26 H 1.09006 * 109.46853 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46579 * 240.00290 * 2 1 3 28 28 H 1.09005 * 109.47116 * 175.45953 * 3 2 1 29 29 H 1.08999 * 109.47825 * 295.46369 * 3 2 1 30 30 H 1.09001 * 109.47403 * 55.46560 * 3 2 1 31 31 H 1.00900 * 111.00077 * 209.90061 * 6 4 2 32 32 H 1.09004 * 109.46322 * 326.90165 * 7 6 4 33 33 H 1.09003 * 109.49832 * 58.65777 * 8 7 6 34 34 H 1.09007 * 109.49414 * 298.56464 * 8 7 6 35 35 H 1.08996 * 109.58682 * 174.42092 * 9 8 7 36 36 H 1.09001 * 109.58002 * 294.70203 * 9 8 7 37 37 H 0.97002 * 119.99755 * 179.97438 * 14 13 11 38 38 H 1.09002 * 109.46902 * 293.58019 * 19 10 9 39 39 H 1.09001 * 109.71634 * 173.28512 * 19 10 9 40 40 H 1.08997 * 109.49416 * 301.33738 * 20 7 6 41 41 H 1.08999 * 109.49421 * 61.42867 * 20 7 6 42 42 H 1.08998 * 115.54953 * 34.41626 * 21 4 2 43 43 H 1.08997 * 117.49722 * 359.97438 * 22 21 4 44 44 H 1.08994 * 117.49363 * 145.01984 * 22 21 4 45 45 H 1.08998 * 117.50200 * 214.97782 * 23 21 4 46 46 H 1.09005 * 117.49563 * 359.97328 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 3.1300 -0.7351 1.2412 6 7 1.5331 -2.1000 1.2598 7 6 2.4120 -2.9901 0.4898 8 6 1.5985 -4.1696 -0.0481 9 6 2.5108 -5.0773 -0.8792 10 7 3.6681 -5.4655 -0.0617 11 6 3.9959 -6.7851 0.1015 12 1 3.2210 -7.5374 0.1059 13 6 5.3240 -7.1557 0.2611 14 7 6.2850 -6.3151 -0.0589 15 14 5.7476 -8.8476 0.9304 16 1 4.4963 -9.5964 1.2108 17 1 6.5535 -9.5891 -0.0726 18 1 6.5297 -8.7023 2.1843 19 6 4.4647 -4.4108 0.5806 20 6 3.5306 -3.5106 1.3955 21 6 1.5484 0.0125 2.4984 22 6 2.5931 0.7392 3.3479 23 6 1.9571 -0.5561 3.8586 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1270 1.4436 0.0814 29 1 1.7446 1.9324 -0.9278 30 1 1.6118 1.9792 0.8466 31 1 1.4167 -2.4352 2.2044 32 1 2.8470 -2.4388 -0.3439 33 1 0.7878 -3.7970 -0.6742 34 1 1.1839 -4.7360 0.7859 35 1 1.9616 -5.9688 -1.1819 36 1 2.8521 -4.5404 -1.7643 37 1 7.2130 -6.5741 0.0530 38 1 4.9675 -3.8186 -0.1841 39 1 5.2063 -4.8605 1.2409 40 1 4.0950 -2.6689 1.7968 41 1 3.0977 -4.0831 2.2158 42 1 0.5605 0.4662 2.4188 43 1 3.6306 0.6940 3.0170 44 1 2.2922 1.6706 3.8275 45 1 1.2383 -0.4764 4.6741 46 1 2.5760 -1.4534 3.8636 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610813861.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:58 Heat of formation + Delta-G solvation = 27.044578 kcal Electronic energy + Delta-G solvation = -21591.276249 eV Core-core repulsion = 18709.297067 eV Total energy + Delta-G solvation = -2881.979182 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.30375 -37.31619 -35.05973 -33.85818 -31.71681 -29.82805 -29.17520 -27.01113 -25.73834 -24.05436 -22.49693 -22.06346 -21.98550 -21.16380 -19.12614 -18.74139 -16.82808 -16.05962 -15.44638 -14.98957 -14.60712 -14.16798 -13.83245 -13.65762 -13.45561 -13.21257 -12.94672 -12.69950 -12.60252 -12.21936 -11.87840 -11.65517 -11.62697 -11.28510 -11.12798 -11.02813 -10.81229 -10.73887 -10.67424 -10.42725 -10.30740 -10.19830 -10.10890 -10.04364 -9.94269 -9.63921 -9.42960 -8.47370 -7.92240 -6.58176 -5.77206 -3.22430 3.37459 3.45479 3.48071 3.69931 4.38960 4.51463 4.63265 4.81118 5.01127 5.12922 5.15957 5.29409 5.37876 5.43559 5.49917 5.55221 5.59546 5.66175 5.72192 5.76117 5.82375 5.85218 5.98965 6.00281 6.04564 6.08094 6.18853 6.23194 6.27619 6.38394 6.46884 6.49594 6.59831 6.61795 6.68459 6.73473 6.89347 7.07190 7.34181 7.49130 7.61196 7.78174 7.83482 8.50001 9.24405 9.87392 10.47060 11.31392 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.028152 B = 0.004591 C = 0.004321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.348896 B = 6098.001056 C = 6479.087494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.081 4.081 3 C -0.145 4.145 4 C 0.122 3.878 5 H 0.043 0.957 6 N -0.681 5.681 7 C 0.096 3.904 8 C -0.116 4.116 9 C 0.145 3.855 10 N -0.591 5.591 11 C -0.253 4.253 12 H 0.064 0.936 13 C 0.005 3.995 14 N -0.902 5.902 15 Si 0.900 3.100 16 H -0.277 1.277 17 H -0.290 1.290 18 H -0.289 1.289 19 C 0.179 3.821 20 C -0.166 4.166 21 C -0.147 4.147 22 C -0.178 4.178 23 C -0.183 4.183 24 H 0.047 0.953 25 H 0.040 0.960 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.338 0.662 32 H 0.067 0.933 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.015 0.985 37 H 0.252 0.748 38 H 0.016 0.984 39 H 0.077 0.923 40 H 0.041 0.959 41 H 0.055 0.945 42 H 0.109 0.891 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.092 0.908 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.381 14.559 4.057 17.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.100 4.100 3 C -0.203 4.203 4 C 0.012 3.988 5 H 0.061 0.939 6 N -0.311 5.311 7 C -0.013 4.013 8 C -0.155 4.155 9 C 0.018 3.982 10 N -0.314 5.314 11 C -0.383 4.383 12 H 0.081 0.919 13 C -0.194 4.194 14 N -0.546 5.546 15 Si 0.729 3.271 16 H -0.202 1.202 17 H -0.217 1.217 18 H -0.216 1.216 19 C 0.052 3.948 20 C -0.206 4.206 21 C -0.165 4.165 22 C -0.216 4.216 23 C -0.221 4.221 24 H 0.066 0.934 25 H 0.059 0.941 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.157 0.843 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.033 0.967 37 H 0.062 0.938 38 H 0.035 0.965 39 H 0.095 0.905 40 H 0.060 0.940 41 H 0.073 0.927 42 H 0.127 0.873 43 H 0.110 0.890 44 H 0.109 0.891 45 H 0.111 0.889 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.650 14.616 3.527 17.866 hybrid contribution 1.223 -0.885 1.028 1.827 sum -8.426 13.731 4.555 16.742 Atomic orbital electron populations 1.21723 0.94896 1.02648 0.99995 1.21024 0.96552 0.94899 0.97561 1.21826 1.00774 0.96404 1.01274 1.21075 0.96415 0.88661 0.92614 0.93897 1.60711 1.50357 1.00883 1.19158 1.21520 0.91429 0.92858 0.95505 1.21965 0.97827 0.95847 0.99900 1.20934 0.89131 0.95994 0.92163 1.44001 1.30451 1.02696 1.54238 1.19197 0.90847 0.83603 1.44671 0.91882 1.25131 0.96178 0.97497 1.00572 1.70050 0.98870 1.35880 1.49773 0.86268 0.78126 0.84190 0.78471 1.20174 1.21681 1.21602 1.20596 0.91693 0.88303 0.94187 1.22841 0.98916 0.99296 0.99582 1.22542 0.99579 1.03184 0.91190 1.22991 0.98353 0.95997 1.04240 1.22949 1.03975 0.97689 0.97446 0.93413 0.94058 0.91135 0.91381 0.93100 0.93082 0.92653 0.84276 0.91523 0.92692 0.92635 0.92816 0.96703 0.93756 0.96545 0.90466 0.94020 0.92663 0.87292 0.88964 0.89075 0.88907 0.88828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 8.80 37.16 0.33 -1.18 16 2 C -0.08 -0.96 2.83 -90.62 -0.26 -1.21 16 3 C -0.14 -1.48 8.85 37.15 0.33 -1.15 16 4 C 0.12 1.52 1.86 -67.71 -0.13 1.40 16 5 H 0.04 0.61 7.01 -51.93 -0.36 0.25 16 6 N -0.68 -9.55 5.26 -99.69 -0.52 -10.08 16 7 C 0.10 1.63 2.23 -67.67 -0.15 1.48 16 8 C -0.12 -2.08 5.69 -26.61 -0.15 -2.23 16 9 C 0.14 3.11 6.51 -3.71 -0.02 3.09 16 10 N -0.59 -15.02 2.98 -172.29 -0.51 -15.53 16 11 C -0.25 -7.06 9.54 -15.06 -0.14 -7.21 16 12 H 0.06 1.74 7.88 -52.49 -0.41 1.32 16 13 C 0.01 0.15 4.90 -17.43 -0.09 0.06 16 14 N -0.90 -26.56 11.46 55.49 0.64 -25.92 16 15 Si 0.90 21.87 29.58 -169.99 -5.03 16.84 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 19 C 0.18 4.31 5.27 -3.69 -0.02 4.29 16 20 C -0.17 -3.15 5.31 -26.61 -0.14 -3.30 16 21 C -0.15 -1.56 3.85 -90.62 -0.35 -1.91 16 22 C -0.18 -1.76 10.18 -26.69 -0.27 -2.03 16 23 C -0.18 -1.91 9.44 -26.69 -0.25 -2.16 16 24 H 0.05 0.49 6.19 -51.93 -0.32 0.17 16 25 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.88 7.58 -51.93 -0.39 0.49 16 27 H 0.07 0.91 7.53 -51.93 -0.39 0.52 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.52 7.36 -51.93 -0.38 0.14 16 31 H 0.34 4.74 7.11 -39.29 -0.28 4.46 16 32 H 0.07 1.20 7.19 -51.93 -0.37 0.83 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.05 1.14 7.93 -51.93 -0.41 0.73 16 36 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.08 2.08 6.36 -51.93 -0.33 1.75 16 40 H 0.04 0.74 7.57 -51.93 -0.39 0.35 16 41 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.11 1.13 6.13 -51.93 -0.32 0.81 16 43 H 0.09 0.96 8.05 -51.93 -0.42 0.54 16 44 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.09 1.09 7.90 -51.93 -0.41 0.68 16 LS Contribution 347.36 15.07 5.23 5.23 Total: -1.00 -28.48 347.36 -10.07 -38.55 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -8.56 Total: 2.97 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: -1.32 Total: -12.06 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: -0.40 Total: -51.53 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.84 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.48 -10.07 -38.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610813861.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.595 kcal (2) G-P(sol) polarization free energy of solvation -28.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds