Wall clock time and date at job start Mon Mar 30 2020 01:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52990 * 109.46834 * 2 1 4 4 C 1.52993 * 109.47181 * 120.00497 * 2 1 3 5 5 H 1.09005 * 109.47390 * 179.11493 * 4 2 1 6 6 N 1.46902 * 109.47507 * 59.11565 * 4 2 1 7 7 C 1.46892 * 111.00076 * 85.94023 * 6 4 2 8 8 C 1.53043 * 109.46188 * 206.93058 * 7 6 4 9 9 C 1.53196 * 109.31693 * 178.61609 * 8 7 6 10 10 N 1.46921 * 108.89023 * 54.56023 * 9 8 7 11 11 C 1.36942 * 120.63014 * 126.46457 * 10 9 8 12 12 H 1.08001 * 119.99961 * 328.23401 * 11 10 9 13 13 C 1.38808 * 119.99930 * 148.22471 * 11 10 9 14 14 N 1.31621 * 120.00450 * 343.65524 * 13 11 10 15 15 Si 1.86807 * 119.99705 * 163.64686 * 13 11 10 16 16 H 1.48499 * 109.46836 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47010 * 120.00206 * 15 13 11 18 18 H 1.48496 * 109.47436 * 240.00124 * 15 13 11 19 19 C 1.46960 * 118.72010 * 306.64059 * 10 9 8 20 20 C 1.53046 * 109.46220 * 86.86273 * 7 6 4 21 21 C 1.53002 * 109.47294 * 299.11493 * 4 2 1 22 22 C 1.53007 * 117.49654 * 248.75128 * 21 4 2 23 23 C 1.52998 * 117.50244 * 180.09139 * 21 4 2 24 24 H 1.08997 * 109.46814 * 299.99221 * 1 2 3 25 25 H 1.08994 * 109.47276 * 60.00059 * 1 2 3 26 26 H 1.09006 * 109.46853 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46579 * 240.00290 * 2 1 3 28 28 H 1.09005 * 109.47116 * 175.45953 * 3 2 1 29 29 H 1.08999 * 109.47825 * 295.46369 * 3 2 1 30 30 H 1.09001 * 109.47403 * 55.46560 * 3 2 1 31 31 H 1.00900 * 111.00077 * 209.90061 * 6 4 2 32 32 H 1.09004 * 109.46322 * 326.90165 * 7 6 4 33 33 H 1.09003 * 109.49832 * 58.65777 * 8 7 6 34 34 H 1.09007 * 109.49414 * 298.56464 * 8 7 6 35 35 H 1.08996 * 109.58682 * 174.42092 * 9 8 7 36 36 H 1.09001 * 109.58002 * 294.70203 * 9 8 7 37 37 H 0.97002 * 119.99755 * 179.97438 * 14 13 11 38 38 H 1.09002 * 109.46902 * 293.58019 * 19 10 9 39 39 H 1.09001 * 109.71634 * 173.28512 * 19 10 9 40 40 H 1.08997 * 109.49416 * 301.33738 * 20 7 6 41 41 H 1.08999 * 109.49421 * 61.42867 * 20 7 6 42 42 H 1.08998 * 115.54953 * 34.41626 * 21 4 2 43 43 H 1.08997 * 117.49722 * 359.97438 * 22 21 4 44 44 H 1.08994 * 117.49363 * 145.01984 * 22 21 4 45 45 H 1.08998 * 117.50200 * 214.97782 * 23 21 4 46 46 H 1.09005 * 117.49563 * 359.97328 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 3.1300 -0.7351 1.2412 6 7 1.5331 -2.1000 1.2598 7 6 2.4120 -2.9901 0.4898 8 6 1.5985 -4.1696 -0.0481 9 6 2.5108 -5.0773 -0.8792 10 7 3.6681 -5.4655 -0.0617 11 6 3.9959 -6.7851 0.1015 12 1 3.2210 -7.5374 0.1059 13 6 5.3240 -7.1557 0.2611 14 7 6.2850 -6.3151 -0.0589 15 14 5.7476 -8.8476 0.9304 16 1 4.4963 -9.5964 1.2108 17 1 6.5535 -9.5891 -0.0726 18 1 6.5297 -8.7023 2.1843 19 6 4.4647 -4.4108 0.5806 20 6 3.5306 -3.5106 1.3955 21 6 1.5484 0.0125 2.4984 22 6 2.5931 0.7392 3.3479 23 6 1.9571 -0.5561 3.8586 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1270 1.4436 0.0814 29 1 1.7446 1.9324 -0.9278 30 1 1.6118 1.9792 0.8466 31 1 1.4167 -2.4352 2.2044 32 1 2.8470 -2.4388 -0.3439 33 1 0.7878 -3.7970 -0.6742 34 1 1.1839 -4.7360 0.7859 35 1 1.9616 -5.9688 -1.1819 36 1 2.8521 -4.5404 -1.7643 37 1 7.2130 -6.5741 0.0530 38 1 4.9675 -3.8186 -0.1841 39 1 5.2063 -4.8605 1.2409 40 1 4.0950 -2.6689 1.7968 41 1 3.0977 -4.0831 2.2158 42 1 0.5605 0.4662 2.4188 43 1 3.6306 0.6940 3.0170 44 1 2.2922 1.6706 3.8275 45 1 1.2383 -0.4764 4.6741 46 1 2.5760 -1.4534 3.8636 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610813861.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:58 Heat of formation + Delta-G solvation = 11.968168 kcal Electronic energy + Delta-G solvation = -21591.930011 eV Core-core repulsion = 18709.297067 eV Total energy + Delta-G solvation = -2882.632944 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.43360 -38.81524 -36.17394 -35.29737 -33.50152 -31.56396 -30.82748 -27.86053 -27.24902 -25.63426 -23.79733 -23.47912 -22.92307 -22.64124 -20.76693 -19.70875 -18.77669 -17.00884 -16.93455 -16.48127 -16.09661 -15.50000 -15.34123 -15.10079 -14.82636 -14.67892 -14.22267 -14.13731 -14.03582 -13.36711 -13.11459 -13.01500 -12.77374 -12.65722 -12.56459 -12.43932 -12.35161 -12.26435 -11.97422 -11.96713 -11.73133 -11.69908 -11.41134 -11.30869 -11.14282 -10.97703 -10.88167 -10.59701 -9.19828 -8.65235 -7.90178 -5.39535 1.44004 1.45628 1.56877 2.49093 2.81734 3.23527 3.34345 3.67365 3.72961 3.90937 3.99721 4.15007 4.18839 4.23516 4.27826 4.38999 4.44966 4.53379 4.54746 4.68559 4.70567 4.79509 4.84018 4.90590 4.93309 4.96379 5.04457 5.06949 5.16381 5.21261 5.23428 5.24986 5.27297 5.35095 5.36787 5.41014 5.45831 5.56926 5.63067 5.66310 5.68136 6.22370 6.38612 6.58605 7.13022 7.83106 8.37833 9.16273 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.028152 B = 0.004591 C = 0.004321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.348896 B = 6098.001056 C = 6479.087494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.081 4.081 3 C -0.140 4.140 4 C 0.123 3.877 5 H 0.024 0.976 6 N -0.669 5.669 7 C 0.110 3.890 8 C -0.101 4.101 9 C 0.140 3.860 10 N -0.608 5.608 11 C -0.266 4.266 12 H 0.064 0.936 13 C -0.047 4.047 14 N -0.936 5.936 15 Si 0.967 3.033 16 H -0.265 1.265 17 H -0.290 1.290 18 H -0.289 1.289 19 C 0.187 3.813 20 C -0.148 4.148 21 C -0.146 4.146 22 C -0.171 4.171 23 C -0.186 4.186 24 H 0.059 0.941 25 H 0.049 0.951 26 H 0.055 0.945 27 H 0.047 0.953 28 H 0.044 0.956 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.342 0.658 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.009 0.991 37 H 0.250 0.750 38 H -0.008 1.008 39 H 0.042 0.958 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.120 0.880 43 H 0.084 0.916 44 H 0.110 0.890 45 H 0.108 0.892 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.165 15.645 5.046 19.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.101 4.101 3 C -0.198 4.198 4 C 0.013 3.987 5 H 0.042 0.958 6 N -0.299 5.299 7 C 0.000 4.000 8 C -0.141 4.141 9 C 0.015 3.985 10 N -0.332 5.332 11 C -0.396 4.396 12 H 0.082 0.918 13 C -0.243 4.243 14 N -0.581 5.581 15 Si 0.794 3.206 16 H -0.189 1.189 17 H -0.217 1.217 18 H -0.216 1.216 19 C 0.060 3.940 20 C -0.189 4.189 21 C -0.164 4.164 22 C -0.208 4.208 23 C -0.223 4.223 24 H 0.078 0.922 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.161 0.839 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.027 0.973 37 H 0.059 0.941 38 H 0.010 0.990 39 H 0.061 0.939 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.138 0.862 43 H 0.102 0.898 44 H 0.129 0.871 45 H 0.126 0.874 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.468 15.716 4.517 19.973 hybrid contribution 1.779 -1.190 0.673 2.244 sum -9.689 14.526 5.189 18.216 Atomic orbital electron populations 1.21665 0.93969 1.02009 1.01054 1.21013 0.97260 0.95627 0.96157 1.21782 1.00413 0.95334 1.02265 1.21102 0.95349 0.87922 0.94301 0.95794 1.60687 1.48988 1.01181 1.19076 1.21258 0.90835 0.92918 0.95034 1.21778 0.97470 0.95306 0.99520 1.21079 0.88463 0.96778 0.92216 1.44260 1.31389 1.02310 1.55259 1.19525 0.91103 0.84827 1.44192 0.91802 1.25905 0.96050 1.01189 1.01127 1.70200 0.98958 1.37832 1.51148 0.85225 0.78006 0.79910 0.77429 1.18918 1.21721 1.21597 1.20386 0.92000 0.88288 0.93312 1.22622 0.98687 0.98535 0.99008 1.22450 1.00275 1.03485 0.90224 1.23044 0.97711 0.96573 1.03485 1.22976 1.04207 0.97450 0.97709 0.92178 0.93202 0.92567 0.93423 0.93687 0.92251 0.91451 0.83921 0.92522 0.90444 0.92861 0.92740 0.97287 0.94103 0.99027 0.93920 0.92810 0.92864 0.86176 0.89788 0.87135 0.87407 0.90326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 8.80 71.98 0.63 -1.93 16 2 C -0.08 -1.79 2.83 -10.80 -0.03 -1.82 16 3 C -0.14 -2.57 8.85 71.98 0.64 -1.93 16 4 C 0.12 2.89 1.86 44.91 0.08 2.97 16 5 H 0.02 0.67 7.01 -2.38 -0.02 0.65 16 6 N -0.67 -17.79 5.26 -469.33 -2.47 -20.26 16 7 C 0.11 3.64 2.23 44.95 0.10 3.74 16 8 C -0.10 -3.52 5.69 30.67 0.17 -3.35 16 9 C 0.14 6.06 6.51 86.36 0.56 6.62 16 10 N -0.61 -31.55 2.98 -699.00 -2.08 -33.63 16 11 C -0.27 -15.05 9.54 84.03 0.80 -14.25 16 12 H 0.06 3.53 7.88 -2.91 -0.02 3.51 16 13 C -0.05 -2.68 4.90 84.86 0.42 -2.27 16 14 N -0.94 -56.77 11.46 21.65 0.25 -56.52 16 15 Si 0.97 45.54 29.58 68.60 2.03 47.57 16 16 H -0.26 -11.84 7.11 99.48 0.71 -11.14 16 17 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 18 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 19 C 0.19 9.30 5.27 86.36 0.46 9.76 16 20 C -0.15 -5.66 5.31 30.68 0.16 -5.50 16 21 C -0.15 -2.75 3.85 -10.79 -0.04 -2.79 16 22 C -0.17 -2.96 10.18 30.62 0.31 -2.64 16 23 C -0.19 -3.47 9.44 30.62 0.29 -3.18 16 24 H 0.06 1.04 6.19 -2.39 -0.01 1.02 16 25 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.06 1.28 7.58 -2.38 -0.02 1.26 16 27 H 0.05 1.24 7.53 -2.39 -0.02 1.22 16 28 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 1.08 7.36 -2.39 -0.02 1.06 16 31 H 0.34 8.94 7.11 -89.69 -0.64 8.31 16 32 H 0.06 2.03 7.19 -2.38 -0.02 2.02 16 33 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 35 H 0.05 2.30 7.93 -2.39 -0.02 2.28 16 36 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 37 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 38 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 39 H 0.04 2.40 6.36 -2.39 -0.02 2.38 16 40 H 0.05 1.91 7.57 -2.39 -0.02 1.89 16 41 H 0.05 2.06 8.14 -2.39 -0.02 2.05 16 42 H 0.12 2.06 6.13 -2.39 -0.01 2.04 16 43 H 0.08 1.61 8.05 -2.39 -0.02 1.59 16 44 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.08 1.72 7.90 -2.38 -0.02 1.70 16 Total: -1.00 -62.01 347.36 2.57 -59.44 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: 0.29 Total: 19.97 kcal Atomic # 6 Polarization: -21.12 SS G_CDS: 4.55 Total: -16.57 kcal Atomic # 7 Polarization: -106.10 SS G_CDS: -4.30 Total: -110.41 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -62.01 2.57 -59.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610813861.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.407 kcal (2) G-P(sol) polarization free energy of solvation -62.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds