Wall clock time and date at job start Mon Mar 30 2020 00:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 119.99915 * 2 1 4 4 H 1.48504 * 109.46823 * 269.99752 * 3 2 1 5 5 H 1.48498 * 109.47486 * 29.99589 * 3 2 1 6 6 H 1.48496 * 109.47297 * 149.99977 * 3 2 1 7 7 C 1.38809 * 120.00112 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00501 * 163.06735 * 7 2 1 9 9 N 1.36935 * 120.00222 * 343.06578 * 7 2 1 10 10 C 1.46933 * 120.63145 * 331.84262 * 9 7 2 11 11 C 1.53194 * 108.77321 * 233.63087 * 10 9 7 12 12 C 1.53037 * 109.31031 * 305.35852 * 11 10 9 13 13 N 1.46905 * 109.45901 * 181.38817 * 12 11 10 14 14 C 1.46900 * 110.99903 * 155.00253 * 13 12 11 15 15 C 1.52999 * 109.46896 * 180.02562 * 14 13 12 16 16 C 1.52997 * 109.47564 * 64.99610 * 15 14 13 17 17 C 1.52998 * 109.47212 * 179.97438 * 16 15 14 18 18 C 1.53008 * 109.47232 * 300.00217 * 17 16 15 19 19 C 1.52998 * 109.47077 * 60.00148 * 18 17 16 20 20 C 1.53004 * 109.46845 * 299.99715 * 19 18 17 21 21 C 1.53041 * 109.53996 * 61.37211 * 12 11 10 22 22 C 1.46923 * 120.63486 * 151.86189 * 9 7 2 23 23 H 0.96999 * 120.00017 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.58920 * 113.83793 * 10 9 7 25 25 H 1.09000 * 109.69990 * 353.48132 * 10 9 7 26 26 H 1.09005 * 109.49166 * 185.40954 * 11 10 9 27 27 H 1.08993 * 109.50114 * 65.31565 * 11 10 9 28 28 H 1.09004 * 109.46470 * 301.35985 * 12 11 10 29 29 H 1.00896 * 110.99723 * 31.04985 * 13 12 11 30 30 H 1.08994 * 109.47354 * 59.99715 * 14 13 12 31 31 H 1.09005 * 109.46952 * 299.99844 * 14 13 12 32 32 H 1.09004 * 109.46892 * 304.99457 * 15 14 13 33 33 H 1.08989 * 109.47252 * 300.00318 * 16 15 14 34 34 H 1.09003 * 109.46649 * 60.00179 * 16 15 14 35 35 H 1.09005 * 109.47094 * 180.02562 * 17 16 15 36 36 H 1.09004 * 109.46967 * 60.00017 * 17 16 15 37 37 H 1.08995 * 109.47011 * 299.99636 * 18 17 16 38 38 H 1.08995 * 109.46779 * 180.02562 * 18 17 16 39 39 H 1.08992 * 109.47014 * 180.02562 * 19 18 17 40 40 H 1.08993 * 109.47126 * 59.99680 * 19 18 17 41 41 H 1.08995 * 109.47130 * 300.00443 * 20 19 18 42 42 H 1.08996 * 109.47071 * 179.97438 * 20 19 18 43 43 H 1.08998 * 109.49987 * 58.57869 * 21 12 11 44 44 H 1.08996 * 109.49902 * 178.68218 * 21 12 11 45 45 H 1.09005 * 109.58738 * 246.15995 * 22 9 7 46 46 H 1.09003 * 109.58298 * 6.43880 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2226 -0.2718 9 7 1.3702 -2.3622 0.3465 10 6 0.2263 -2.3398 1.2684 11 6 0.4985 -3.3180 2.4155 12 6 0.8135 -4.6999 1.8383 13 7 1.0424 -5.6484 2.9364 14 6 0.7627 -7.0258 2.5092 15 6 1.0112 -7.9824 3.6772 16 6 0.0076 -7.6937 4.7953 17 6 0.2558 -8.6507 5.9630 18 6 0.0852 -10.0941 5.4846 19 6 1.0889 -10.3827 4.3665 20 6 0.8406 -9.4257 3.1988 21 6 2.0687 -4.6165 0.9667 22 6 1.8144 -3.6530 -0.1968 23 1 -0.4850 0.8400 -0.0004 24 1 -0.6767 -2.6411 0.7376 25 1 0.0966 -1.3343 1.6687 26 1 -0.3820 -3.3828 3.0549 27 1 1.3481 -2.9657 3.0003 28 1 -0.0266 -5.0408 1.2332 29 1 0.4937 -5.4027 3.7467 30 1 1.4174 -7.2885 1.6783 31 1 -0.2770 -7.1036 2.1912 32 1 2.0246 -7.8412 4.0531 33 1 0.1288 -6.6655 5.1358 34 1 -1.0057 -7.8349 4.4193 35 1 -0.4595 -8.4453 6.7594 36 1 1.2692 -8.5100 6.3390 37 1 -0.9281 -10.2348 5.1086 38 1 0.2615 -10.7757 6.3166 39 1 0.9670 -11.4107 4.0254 40 1 2.1021 -10.2419 4.7425 41 1 -0.1727 -9.5664 2.8228 42 1 1.5559 -9.6310 2.4024 43 1 2.9036 -4.2519 1.5651 44 1 2.3059 -5.6056 0.5748 45 1 1.0408 -4.0614 -0.8471 46 1 2.7336 -3.5131 -0.7657 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611038798.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:12 Heat of formation + Delta-G solvation = -14.377089 kcal Electronic energy + Delta-G solvation = -20916.468683 eV Core-core repulsion = 18032.693323 eV Total energy + Delta-G solvation = -2883.775360 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.10265 -37.73318 -35.06763 -32.63514 -31.13675 -30.84393 -29.84031 -28.74052 -25.37627 -24.08178 -22.71817 -22.14794 -21.33084 -20.75279 -19.83534 -18.96022 -16.73382 -15.75151 -15.38688 -14.95809 -14.60805 -14.33056 -14.17587 -13.90464 -13.62110 -13.43971 -13.17760 -12.86851 -12.60019 -12.34612 -12.13843 -11.87504 -11.58357 -11.32791 -11.27236 -11.14673 -10.99008 -10.67075 -10.66390 -10.56450 -10.27919 -10.26702 -10.09955 -10.08308 -9.86787 -9.53610 -9.37258 -8.43032 -8.07714 -6.62075 -5.75037 -3.16723 3.40101 3.46927 3.50145 4.34402 4.53635 4.55621 4.61781 4.66197 5.03083 5.15675 5.24805 5.31791 5.36989 5.37834 5.40825 5.49504 5.50070 5.59270 5.63544 5.73846 5.82777 5.85136 5.87033 5.97273 6.00372 6.04750 6.07395 6.12682 6.20662 6.25943 6.39252 6.40337 6.56988 6.62119 6.69471 6.72603 6.88190 7.10225 7.41557 7.45286 7.68770 7.73104 7.83931 8.49711 9.25816 9.89654 10.46937 11.33772 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.047857 B = 0.003370 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.937209 B = 8305.890547 C = 8544.610150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.000 4.000 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.249 4.249 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.174 3.826 11 C -0.141 4.141 12 C 0.096 3.904 13 N -0.689 5.689 14 C 0.064 3.936 15 C -0.085 4.085 16 C -0.116 4.116 17 C -0.118 4.118 18 C -0.120 4.120 19 C -0.118 4.118 20 C -0.114 4.114 21 C -0.116 4.116 22 C 0.145 3.855 23 H 0.253 0.747 24 H 0.015 0.985 25 H 0.088 0.912 26 H 0.044 0.956 27 H 0.062 0.938 28 H 0.033 0.967 29 H 0.334 0.666 30 H 0.069 0.931 31 H 0.023 0.977 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.045 0.955 45 H 0.013 0.987 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.412 -18.507 9.591 20.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.198 4.198 3 Si 0.731 3.269 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.379 4.379 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.048 3.952 11 C -0.180 4.180 12 C -0.013 4.013 13 N -0.320 5.320 14 C -0.065 4.065 15 C -0.103 4.103 16 C -0.154 4.154 17 C -0.156 4.156 18 C -0.157 4.157 19 C -0.156 4.156 20 C -0.152 4.152 21 C -0.156 4.156 22 C 0.018 3.982 23 H 0.063 0.937 24 H 0.033 0.967 25 H 0.106 0.894 26 H 0.062 0.938 27 H 0.081 0.919 28 H 0.051 0.949 29 H 0.153 0.847 30 H 0.088 0.912 31 H 0.042 0.958 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.063 0.937 45 H 0.031 0.969 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.155 -18.396 9.457 20.685 hybrid contribution -0.650 0.842 -0.070 1.066 sum -0.495 -17.554 9.387 19.912 Atomic orbital electron populations 1.70034 1.05274 1.25414 1.54232 1.25042 0.95284 0.98402 1.01063 0.86306 0.79200 0.83669 0.77677 1.21442 1.21596 1.20466 1.19188 0.92546 0.84869 1.41312 0.91744 1.44045 1.35864 1.01585 1.49982 1.20723 0.88605 0.98067 0.87826 1.22396 1.00023 0.95447 1.00176 1.21459 0.96720 0.91786 0.91334 1.60644 1.61758 1.01394 1.08236 1.22004 0.98455 0.88945 0.97146 1.21177 1.00206 0.93757 0.95203 1.21602 0.98969 0.99296 0.95544 1.21517 1.01681 0.94724 0.97652 1.21538 0.99449 0.96647 0.98071 1.21514 0.99428 0.98760 0.95865 1.21551 1.01663 0.94378 0.97599 1.21989 0.97409 0.98358 0.97814 1.20929 0.97446 0.86927 0.92935 0.93708 0.96687 0.89390 0.93774 0.91875 0.94852 0.84714 0.91237 0.95842 0.90379 0.91655 0.92400 0.92300 0.91976 0.92218 0.92395 0.92306 0.92014 0.92194 0.91964 0.91832 0.93661 0.96872 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.63 11.19 55.49 0.62 -26.01 16 2 C 0.00 0.01 4.92 -17.43 -0.09 -0.08 16 3 Si 0.90 21.98 29.59 -169.99 -5.03 16.95 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.25 -7.00 9.58 -15.06 -0.14 -7.15 16 8 H 0.06 1.78 7.89 -52.49 -0.41 1.36 16 9 N -0.59 -15.27 2.99 -172.31 -0.52 -15.78 16 10 C 0.17 4.25 5.30 -3.71 -0.02 4.23 16 11 C -0.14 -2.76 5.36 -26.61 -0.14 -2.91 16 12 C 0.10 1.70 2.46 -67.67 -0.17 1.53 16 13 N -0.69 -10.16 6.31 -106.68 -0.67 -10.83 16 14 C 0.06 0.81 4.94 -3.82 -0.02 0.79 16 15 C -0.08 -0.88 2.40 -90.62 -0.22 -1.10 16 16 C -0.12 -1.13 4.98 -26.73 -0.13 -1.27 16 17 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16 18 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 19 C -0.12 -0.95 5.92 -26.73 -0.16 -1.11 16 20 C -0.11 -1.04 5.20 -26.73 -0.14 -1.18 16 21 C -0.12 -2.16 5.59 -26.61 -0.15 -2.31 16 22 C 0.14 3.16 6.52 -3.71 -0.02 3.14 16 23 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 24 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.09 2.39 6.06 -51.93 -0.31 2.07 16 26 H 0.04 0.77 8.10 -51.93 -0.42 0.35 16 27 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.03 0.62 7.80 -51.93 -0.40 0.21 16 29 H 0.33 4.63 6.58 -39.29 -0.26 4.37 16 30 H 0.07 0.92 7.41 -51.93 -0.38 0.54 16 31 H 0.02 0.30 8.06 -51.93 -0.42 -0.11 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.67 6.68 -51.94 -0.35 0.32 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.04 0.76 7.42 -51.93 -0.39 0.37 16 45 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 46 H 0.05 1.16 7.93 -51.93 -0.41 0.75 16 LS Contribution 342.63 15.07 5.16 5.16 Total: -1.00 -29.00 342.63 -10.96 -39.96 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -8.81 Total: 0.24 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -1.71 Total: -9.68 kcal Atomic # 7 Polarization: -52.06 SS G_CDS: -0.57 Total: -52.63 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.00 -10.96 -39.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611038798.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.580 kcal (2) G-P(sol) polarization free energy of solvation -28.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds