Wall clock time and date at job start Mon Mar 30 2020 00:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 119.99915 * 2 1 4 4 H 1.48504 * 109.46823 * 269.99752 * 3 2 1 5 5 H 1.48498 * 109.47486 * 29.99589 * 3 2 1 6 6 H 1.48496 * 109.47297 * 149.99977 * 3 2 1 7 7 C 1.38809 * 120.00112 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00501 * 163.06735 * 7 2 1 9 9 N 1.36935 * 120.00222 * 343.06578 * 7 2 1 10 10 C 1.46933 * 120.63145 * 331.84262 * 9 7 2 11 11 C 1.53194 * 108.77321 * 233.63087 * 10 9 7 12 12 C 1.53037 * 109.31031 * 305.35852 * 11 10 9 13 13 N 1.46905 * 109.45901 * 181.38817 * 12 11 10 14 14 C 1.46900 * 110.99903 * 155.00253 * 13 12 11 15 15 C 1.52999 * 109.46896 * 180.02562 * 14 13 12 16 16 C 1.52997 * 109.47564 * 64.99610 * 15 14 13 17 17 C 1.52998 * 109.47212 * 179.97438 * 16 15 14 18 18 C 1.53008 * 109.47232 * 300.00217 * 17 16 15 19 19 C 1.52998 * 109.47077 * 60.00148 * 18 17 16 20 20 C 1.53004 * 109.46845 * 299.99715 * 19 18 17 21 21 C 1.53041 * 109.53996 * 61.37211 * 12 11 10 22 22 C 1.46923 * 120.63486 * 151.86189 * 9 7 2 23 23 H 0.96999 * 120.00017 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.58920 * 113.83793 * 10 9 7 25 25 H 1.09000 * 109.69990 * 353.48132 * 10 9 7 26 26 H 1.09005 * 109.49166 * 185.40954 * 11 10 9 27 27 H 1.08993 * 109.50114 * 65.31565 * 11 10 9 28 28 H 1.09004 * 109.46470 * 301.35985 * 12 11 10 29 29 H 1.00896 * 110.99723 * 31.04985 * 13 12 11 30 30 H 1.08994 * 109.47354 * 59.99715 * 14 13 12 31 31 H 1.09005 * 109.46952 * 299.99844 * 14 13 12 32 32 H 1.09004 * 109.46892 * 304.99457 * 15 14 13 33 33 H 1.08989 * 109.47252 * 300.00318 * 16 15 14 34 34 H 1.09003 * 109.46649 * 60.00179 * 16 15 14 35 35 H 1.09005 * 109.47094 * 180.02562 * 17 16 15 36 36 H 1.09004 * 109.46967 * 60.00017 * 17 16 15 37 37 H 1.08995 * 109.47011 * 299.99636 * 18 17 16 38 38 H 1.08995 * 109.46779 * 180.02562 * 18 17 16 39 39 H 1.08992 * 109.47014 * 180.02562 * 19 18 17 40 40 H 1.08993 * 109.47126 * 59.99680 * 19 18 17 41 41 H 1.08995 * 109.47130 * 300.00443 * 20 19 18 42 42 H 1.08996 * 109.47071 * 179.97438 * 20 19 18 43 43 H 1.08998 * 109.49987 * 58.57869 * 21 12 11 44 44 H 1.08996 * 109.49902 * 178.68218 * 21 12 11 45 45 H 1.09005 * 109.58738 * 246.15995 * 22 9 7 46 46 H 1.09003 * 109.58298 * 6.43880 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2226 -0.2718 9 7 1.3702 -2.3622 0.3465 10 6 0.2263 -2.3398 1.2684 11 6 0.4985 -3.3180 2.4155 12 6 0.8135 -4.6999 1.8383 13 7 1.0424 -5.6484 2.9364 14 6 0.7627 -7.0258 2.5092 15 6 1.0112 -7.9824 3.6772 16 6 0.0076 -7.6937 4.7953 17 6 0.2558 -8.6507 5.9630 18 6 0.0852 -10.0941 5.4846 19 6 1.0889 -10.3827 4.3665 20 6 0.8406 -9.4257 3.1988 21 6 2.0687 -4.6165 0.9667 22 6 1.8144 -3.6530 -0.1968 23 1 -0.4850 0.8400 -0.0004 24 1 -0.6767 -2.6411 0.7376 25 1 0.0966 -1.3343 1.6687 26 1 -0.3820 -3.3828 3.0549 27 1 1.3481 -2.9657 3.0003 28 1 -0.0266 -5.0408 1.2332 29 1 0.4937 -5.4027 3.7467 30 1 1.4174 -7.2885 1.6783 31 1 -0.2770 -7.1036 2.1912 32 1 2.0246 -7.8412 4.0531 33 1 0.1288 -6.6655 5.1358 34 1 -1.0057 -7.8349 4.4193 35 1 -0.4595 -8.4453 6.7594 36 1 1.2692 -8.5100 6.3390 37 1 -0.9281 -10.2348 5.1086 38 1 0.2615 -10.7757 6.3166 39 1 0.9670 -11.4107 4.0254 40 1 2.1021 -10.2419 4.7425 41 1 -0.1727 -9.5664 2.8228 42 1 1.5559 -9.6310 2.4024 43 1 2.9036 -4.2519 1.5651 44 1 2.3059 -5.6056 0.5748 45 1 1.0408 -4.0614 -0.8471 46 1 2.7336 -3.5131 -0.7657 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611038798.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:12 Heat of formation + Delta-G solvation = -30.117545 kcal Electronic energy + Delta-G solvation = -20917.151240 eV Core-core repulsion = 18032.693323 eV Total energy + Delta-G solvation = -2884.457918 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.08989 -39.15321 -36.54167 -34.25434 -32.57236 -31.61231 -31.52918 -30.23821 -26.93427 -25.51220 -23.83409 -23.52589 -22.82082 -21.73917 -20.78795 -20.45625 -18.71696 -16.92718 -16.77287 -16.28097 -15.92378 -15.66755 -15.32976 -15.03740 -14.98549 -14.82094 -14.54695 -14.29813 -13.81910 -13.73147 -13.24127 -13.03944 -12.99630 -12.75268 -12.66184 -12.50250 -12.25552 -12.10556 -11.99969 -11.96393 -11.84817 -11.74077 -11.35843 -11.23133 -11.19320 -10.84485 -10.80550 -10.54114 -9.31764 -8.69545 -7.88450 -5.33799 1.46284 1.47843 1.58173 2.51230 3.15954 3.30226 3.68391 3.81745 3.84471 3.91691 4.03251 4.11238 4.28765 4.40457 4.45429 4.51421 4.53413 4.60903 4.61123 4.68598 4.69642 4.75670 4.84158 4.85333 4.88081 4.98509 5.06373 5.07131 5.13946 5.20094 5.24472 5.29090 5.34156 5.35413 5.39783 5.43250 5.51110 5.52707 5.63778 5.64627 5.72889 6.18396 6.38708 6.54483 7.14054 7.85057 8.37438 9.18348 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.047857 B = 0.003370 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.937209 B = 8305.890547 C = 8544.610150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.052 4.052 3 Si 0.969 3.031 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.271 1.271 7 C -0.265 4.265 8 H 0.065 0.935 9 N -0.611 5.611 10 C 0.180 3.820 11 C -0.126 4.126 12 C 0.106 3.894 13 N -0.686 5.686 14 C 0.065 3.935 15 C -0.077 4.077 16 C -0.116 4.116 17 C -0.117 4.117 18 C -0.119 4.119 19 C -0.117 4.117 20 C -0.112 4.112 21 C -0.103 4.103 22 C 0.141 3.859 23 H 0.250 0.750 24 H -0.006 1.006 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.054 0.946 28 H 0.028 0.972 29 H 0.342 0.658 30 H 0.066 0.934 31 H 0.024 0.976 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.063 0.937 43 H 0.053 0.947 44 H 0.070 0.930 45 H 0.011 0.989 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.190 -20.026 10.549 22.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.247 4.247 3 Si 0.796 3.204 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.196 1.196 7 C -0.395 4.395 8 H 0.083 0.917 9 N -0.335 5.335 10 C 0.054 3.946 11 C -0.166 4.166 12 C -0.004 4.004 13 N -0.318 5.318 14 C -0.064 4.064 15 C -0.096 4.096 16 C -0.153 4.153 17 C -0.154 4.154 18 C -0.156 4.156 19 C -0.154 4.154 20 C -0.150 4.150 21 C -0.142 4.142 22 C 0.015 3.985 23 H 0.059 0.941 24 H 0.012 0.988 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.046 0.954 29 H 0.161 0.839 30 H 0.084 0.916 31 H 0.042 0.958 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.088 0.912 45 H 0.029 0.971 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.770 -19.950 10.424 22.522 hybrid contribution -0.851 1.264 -0.401 1.576 sum -0.081 -18.686 10.023 21.204 Atomic orbital electron populations 1.70187 1.06691 1.25894 1.55428 1.25822 0.96090 1.01566 1.01196 0.85261 0.78071 0.79398 0.77630 1.21027 1.21715 1.19576 1.19517 0.92842 0.86117 1.40993 0.91714 1.44326 1.35993 1.02382 1.50770 1.20531 0.87680 0.97550 0.88824 1.22160 1.00646 0.95414 0.98379 1.21218 0.95947 0.91285 0.91911 1.60569 1.61991 1.01842 1.07389 1.22061 0.98339 0.87975 0.98014 1.21095 0.99906 0.94069 0.94504 1.21589 0.98652 0.99329 0.95772 1.21507 1.01762 0.94895 0.97278 1.21540 0.99408 0.96310 0.98354 1.21509 0.99446 0.99002 0.95456 1.21535 1.01753 0.93601 0.98117 1.21804 0.97421 0.98474 0.96529 1.21068 0.97152 0.86070 0.94217 0.94062 0.98791 0.92654 0.91566 0.92677 0.95382 0.83869 0.91589 0.95817 0.91183 0.92287 0.92467 0.91677 0.92155 0.92158 0.91363 0.91270 0.92090 0.92127 0.91861 0.92841 0.91194 0.97132 0.92729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.39 11.19 21.65 0.24 -56.15 16 2 C -0.05 -2.95 4.92 84.86 0.42 -2.53 16 3 Si 0.97 45.66 29.59 68.60 2.03 47.69 16 4 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 5 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 6 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 7 C -0.26 -15.03 9.58 84.03 0.81 -14.23 16 8 H 0.07 3.59 7.89 -2.91 -0.02 3.57 16 9 N -0.61 -31.96 2.99 -699.08 -2.09 -34.05 16 10 C 0.18 8.99 5.30 86.36 0.46 9.45 16 11 C -0.13 -4.90 5.36 30.67 0.16 -4.74 16 12 C 0.11 3.61 2.46 44.94 0.11 3.72 16 13 N -0.69 -18.95 6.31 -491.42 -3.10 -22.05 16 14 C 0.07 1.52 4.94 86.30 0.43 1.95 16 15 C -0.08 -1.46 2.40 -10.79 -0.03 -1.48 16 16 C -0.12 -2.04 4.98 30.59 0.15 -1.88 16 17 C -0.12 -1.75 5.92 30.60 0.18 -1.57 16 18 C -0.12 -1.58 5.92 30.60 0.18 -1.40 16 19 C -0.12 -1.60 5.92 30.59 0.18 -1.42 16 20 C -0.11 -1.80 5.20 30.60 0.16 -1.64 16 21 C -0.10 -3.70 5.59 30.67 0.17 -3.53 16 22 C 0.14 6.13 6.52 86.36 0.56 6.70 16 23 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 24 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 25 H 0.06 3.10 6.06 -2.39 -0.01 3.09 16 26 H 0.07 2.25 8.10 -2.38 -0.02 2.23 16 27 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.03 1.00 7.80 -2.39 -0.02 0.99 16 29 H 0.34 8.78 6.58 -89.70 -0.59 8.19 16 30 H 0.07 1.60 7.41 -2.39 -0.02 1.58 16 31 H 0.02 0.56 8.06 -2.38 -0.02 0.55 16 32 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 33 H 0.06 1.11 6.68 -2.39 -0.02 1.09 16 34 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 36 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 37 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.07 2.19 7.42 -2.39 -0.02 2.17 16 45 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 46 H 0.05 2.32 7.93 -2.39 -0.02 2.30 16 Total: -1.00 -62.18 342.63 1.35 -60.83 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: 0.32 Total: 16.34 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: 3.94 Total: -12.61 kcal Atomic # 7 Polarization: -107.30 SS G_CDS: -4.95 Total: -112.25 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -62.18 1.35 -60.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611038798.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.717 kcal (2) G-P(sol) polarization free energy of solvation -62.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds