Wall clock time and date at job start Mon Mar 30 2020 00:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47143 * 2 1 4 4 N 1.30832 * 125.95547 * 264.99409 * 3 2 1 5 5 C 1.33252 * 109.82687 * 179.73594 * 4 3 2 6 6 C 1.50692 * 125.52896 * 179.97438 * 5 4 3 7 7 N 1.46903 * 109.47034 * 90.00428 * 6 5 4 8 8 C 1.46904 * 110.99793 * 170.00104 * 7 6 5 9 9 C 1.50692 * 109.47088 * 284.40492 * 8 7 6 10 10 H 1.07998 * 120.00103 * 4.92712 * 9 8 7 11 11 C 1.37881 * 120.00079 * 184.91997 * 9 8 7 12 12 N 1.31517 * 119.99846 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99922 * 0.02562 * 11 9 8 14 14 H 1.48492 * 109.47218 * 89.99646 * 13 11 9 15 15 H 1.48498 * 109.47192 * 209.99888 * 13 11 9 16 16 H 1.48505 * 109.46939 * 329.99843 * 13 11 9 17 17 C 1.46903 * 111.00011 * 293.95589 * 7 6 5 18 18 C 1.52999 * 109.46987 * 163.89842 * 17 7 6 19 19 C 1.52999 * 109.46911 * 177.09668 * 18 17 7 20 20 C 1.53001 * 109.46899 * 297.09293 * 18 17 7 21 21 N 1.30716 * 108.94305 * 0.02562 * 5 4 3 22 22 N 1.34420 * 125.96227 * 84.69279 * 3 2 1 23 23 H 0.96998 * 126.82584 * 0.26227 * 22 3 2 24 24 H 1.08996 * 109.47568 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47037 * 300.00389 * 1 2 3 26 26 H 1.09006 * 109.47351 * 60.00095 * 1 2 3 27 27 H 1.08994 * 109.46865 * 239.99944 * 2 1 3 28 28 H 1.09002 * 109.46885 * 119.99766 * 2 1 3 29 29 H 1.09000 * 109.47440 * 210.00730 * 6 5 4 30 30 H 1.09002 * 109.47172 * 330.00553 * 6 5 4 31 31 H 1.08999 * 109.47151 * 44.40774 * 8 7 6 32 32 H 1.09007 * 109.46737 * 164.41180 * 8 7 6 33 33 H 0.96996 * 119.99472 * 180.02562 * 12 11 9 34 34 H 1.09003 * 109.47019 * 283.89520 * 17 7 6 35 35 H 1.08994 * 109.47007 * 43.89583 * 17 7 6 36 36 H 1.09005 * 109.47170 * 57.09298 * 18 17 7 37 37 H 1.09000 * 109.47111 * 60.00037 * 19 18 17 38 38 H 1.09004 * 109.46920 * 179.97438 * 19 18 17 39 39 H 1.08995 * 109.47077 * 299.99636 * 19 18 17 40 40 H 1.09000 * 109.47576 * 300.00240 * 20 18 17 41 41 H 1.09001 * 109.47183 * 60.00237 * 20 18 17 42 42 H 1.09004 * 109.47187 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3755 2.1143 -1.0550 5 6 2.7663 3.3338 -0.6868 6 6 3.2360 4.4214 -1.6181 7 7 2.0864 5.2299 -2.0459 8 6 2.5275 6.4358 -2.7596 9 6 3.0571 7.4403 -1.7690 10 1 3.1395 7.1772 -0.7248 11 6 3.4366 8.6953 -2.1957 12 7 3.8993 9.5718 -1.3312 13 14 3.2936 9.1506 -4.0018 14 1 1.9550 9.7396 -4.2593 15 1 4.3449 10.1407 -4.3474 16 1 3.4671 7.9332 -4.8343 17 6 1.1635 4.4382 -2.8702 18 6 -0.1838 5.1574 -2.9612 19 6 -1.1215 4.3695 -3.8783 20 6 -0.8026 5.2596 -1.5656 21 7 2.6773 3.4334 0.6135 22 7 2.2006 2.1986 1.0833 23 1 2.0274 1.9554 2.0062 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8932 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.9551 5.0569 -1.1014 30 1 3.7095 3.9725 -2.4913 31 1 3.3146 6.1724 -3.4661 32 1 1.6844 6.8674 -3.2991 33 1 4.1659 10.4547 -1.6314 34 1 1.5803 4.3195 -3.8704 35 1 1.0219 3.4572 -2.4168 36 1 -0.0349 6.1581 -3.3668 37 1 -1.2704 3.3689 -3.4726 38 1 -2.0815 4.8817 -3.9427 39 1 -0.6807 4.2967 -4.8725 40 1 -0.9515 4.2589 -1.1599 41 1 -0.1346 5.8208 -0.9122 42 1 -1.7627 5.7715 -1.6304 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771762224.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:38 Heat of formation + Delta-G solvation = 74.043925 kcal Electronic energy + Delta-G solvation = -20985.600043 eV Core-core repulsion = 18002.118562 eV Total energy + Delta-G solvation = -2983.481481 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.92721 -37.58253 -34.61426 -33.93557 -32.60633 -31.97523 -30.15948 -28.03205 -26.77168 -26.56767 -24.46595 -23.69183 -21.27059 -20.75739 -19.94488 -18.93474 -17.66155 -16.81737 -15.67795 -15.07684 -14.82585 -14.68803 -14.39017 -14.20901 -13.90966 -13.30365 -12.86126 -12.71997 -12.48074 -12.30223 -12.25286 -11.88191 -11.73992 -11.59873 -11.42985 -11.33341 -11.21454 -10.66620 -10.53800 -10.37516 -10.26440 -9.95309 -9.88251 -9.78311 -9.66341 -9.31730 -9.11477 -8.49137 -7.31693 -5.97983 -3.94406 1.81517 2.81538 3.09869 3.33002 3.40625 3.42653 4.04895 4.47872 4.63948 4.78559 4.90594 4.97088 5.12347 5.32569 5.33914 5.38531 5.45364 5.49483 5.66730 5.73219 5.89453 5.93078 6.01580 6.10521 6.17548 6.25484 6.28510 6.32904 6.47558 6.54616 6.59167 6.73513 6.82065 6.88223 6.99749 7.02293 7.21515 7.68438 7.96201 8.04491 8.38618 8.73239 9.14117 9.64007 11.15350 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.020843 B = 0.005690 C = 0.004884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.026086 B = 4919.718335 C = 5732.054577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.043 4.043 3 C 0.272 3.728 4 N -0.537 5.537 5 C 0.250 3.750 6 C 0.151 3.849 7 N -0.517 5.517 8 C 0.163 3.837 9 C -0.505 4.505 10 H 0.082 0.918 11 C 0.069 3.931 12 N -0.900 5.900 13 Si 0.871 3.129 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.268 1.268 17 C 0.054 3.946 18 C -0.093 4.093 19 C -0.142 4.142 20 C -0.130 4.130 21 N -0.291 5.291 22 N -0.489 5.489 23 H 0.435 0.565 24 H 0.068 0.932 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.100 0.900 28 H 0.084 0.916 29 H 0.108 0.892 30 H 0.050 0.950 31 H -0.010 1.010 32 H 0.030 0.970 33 H 0.262 0.738 34 H 0.023 0.977 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.049 0.951 38 H 0.050 0.950 39 H 0.049 0.951 40 H 0.036 0.964 41 H 0.074 0.926 42 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.464 -19.140 0.929 20.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.083 4.083 3 C -0.007 4.007 4 N -0.266 5.266 5 C -0.033 4.033 6 C 0.020 3.980 7 N -0.241 5.241 8 C 0.037 3.963 9 C -0.543 4.543 10 H 0.100 0.900 11 C -0.132 4.132 12 N -0.540 5.540 13 Si 0.698 3.302 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.193 1.193 17 C -0.074 4.074 18 C -0.112 4.112 19 C -0.200 4.200 20 C -0.187 4.187 21 N -0.119 5.119 22 N -0.207 5.207 23 H 0.279 0.721 24 H 0.087 0.913 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.119 0.881 28 H 0.103 0.897 29 H 0.126 0.874 30 H 0.068 0.932 31 H 0.008 0.992 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.041 0.959 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.055 0.945 41 H 0.093 0.907 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -7.421 -18.215 1.366 19.716 hybrid contribution 0.180 -0.144 -0.972 0.999 sum -7.241 -18.359 0.394 19.739 Atomic orbital electron populations 1.21750 0.93413 1.02557 1.02954 1.20114 0.96725 0.86805 1.04692 1.24267 0.96942 0.96005 0.83483 1.70366 1.21844 1.05142 1.29286 1.24384 0.96197 0.92485 0.90219 1.20281 0.93642 0.89714 0.94325 1.61850 1.14426 1.06032 1.41821 1.20227 0.94446 0.87780 0.93814 1.21062 1.40979 0.95997 0.96260 0.89972 1.24881 0.95059 0.96313 0.96981 1.69901 1.44189 1.05953 1.33936 0.86929 0.78056 0.78638 0.86545 1.20222 1.21289 1.19255 1.22234 0.92851 0.97125 0.95207 1.21105 0.94325 0.99633 0.96118 1.21802 0.99089 0.99911 0.99226 1.21627 0.99594 1.00497 0.97015 1.78204 1.21534 0.99121 1.13044 1.48047 1.52139 1.10457 1.10048 0.72078 0.91281 0.92598 0.91583 0.88148 0.89744 0.87357 0.93200 0.99206 0.95227 0.92784 0.95905 0.90697 0.90942 0.93226 0.93070 0.93199 0.94480 0.90667 0.94252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.89 37.16 0.37 -0.68 16 2 C -0.04 -0.34 6.56 -27.88 -0.18 -0.52 16 3 C 0.27 3.50 7.49 -155.70 -1.17 2.33 16 4 N -0.54 -8.89 10.06 -8.16 -0.08 -8.97 16 5 C 0.25 4.71 6.81 -156.85 -1.07 3.64 16 6 C 0.15 3.07 5.42 -4.98 -0.03 3.04 16 7 N -0.52 -11.11 3.73 -237.52 -0.89 -12.00 16 8 C 0.16 3.97 3.65 -4.98 -0.02 3.95 16 9 C -0.50 -14.38 9.16 -34.44 -0.32 -14.70 16 10 H 0.08 2.58 7.89 -52.49 -0.41 2.17 16 11 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 12 N -0.90 -27.83 13.96 55.43 0.77 -27.06 16 13 Si 0.87 21.63 27.37 -169.99 -4.65 16.97 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 16 H -0.27 -6.40 6.69 56.52 0.38 -6.03 16 17 C 0.05 1.01 4.24 -3.82 -0.02 1.00 16 18 C -0.09 -1.61 2.92 -90.62 -0.26 -1.87 16 19 C -0.14 -1.98 9.19 37.16 0.34 -1.64 16 20 C -0.13 -2.25 9.06 37.16 0.34 -1.91 16 21 N -0.29 -5.38 12.80 32.42 0.41 -4.96 16 22 N -0.49 -6.50 7.45 32.62 0.24 -6.26 16 23 H 0.43 4.04 8.96 -182.33 -1.63 2.41 16 24 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.11 2.40 7.31 -51.93 -0.38 2.02 16 30 H 0.05 0.96 8.12 -51.93 -0.42 0.54 16 31 H -0.01 -0.24 7.40 -51.93 -0.38 -0.62 16 32 H 0.03 0.72 5.38 -51.93 -0.28 0.44 16 33 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 34 H 0.02 0.42 8.05 -51.93 -0.42 0.00 16 35 H 0.07 1.38 6.04 -51.93 -0.31 1.06 16 36 H 0.07 1.38 6.47 -51.93 -0.34 1.04 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.07 1.54 7.69 -51.93 -0.40 1.14 16 42 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 339.19 15.07 5.11 5.11 Total: -1.00 -33.22 339.19 -9.56 -42.78 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -8.37 Total: -0.14 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -2.11 Total: -5.47 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: 0.46 Total: -59.26 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.65 Total: 16.97 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.22 -9.56 -42.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771762224.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.825 kcal (2) G-P(sol) polarization free energy of solvation -33.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds