Wall clock time and date at job start Mon Mar 30 2020 00:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47143 * 2 1 4 4 N 1.30832 * 125.95547 * 264.99409 * 3 2 1 5 5 C 1.33252 * 109.82687 * 179.73594 * 4 3 2 6 6 C 1.50692 * 125.52896 * 179.97438 * 5 4 3 7 7 N 1.46903 * 109.47034 * 90.00428 * 6 5 4 8 8 C 1.46904 * 110.99793 * 170.00104 * 7 6 5 9 9 C 1.50692 * 109.47088 * 284.40492 * 8 7 6 10 10 H 1.07998 * 120.00103 * 4.92712 * 9 8 7 11 11 C 1.37881 * 120.00079 * 184.91997 * 9 8 7 12 12 N 1.31517 * 119.99846 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99922 * 0.02562 * 11 9 8 14 14 H 1.48492 * 109.47218 * 89.99646 * 13 11 9 15 15 H 1.48498 * 109.47192 * 209.99888 * 13 11 9 16 16 H 1.48505 * 109.46939 * 329.99843 * 13 11 9 17 17 C 1.46903 * 111.00011 * 293.95589 * 7 6 5 18 18 C 1.52999 * 109.46987 * 163.89842 * 17 7 6 19 19 C 1.52999 * 109.46911 * 177.09668 * 18 17 7 20 20 C 1.53001 * 109.46899 * 297.09293 * 18 17 7 21 21 N 1.30716 * 108.94305 * 0.02562 * 5 4 3 22 22 N 1.34420 * 125.96227 * 84.69279 * 3 2 1 23 23 H 0.96998 * 126.82584 * 0.26227 * 22 3 2 24 24 H 1.08996 * 109.47568 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47037 * 300.00389 * 1 2 3 26 26 H 1.09006 * 109.47351 * 60.00095 * 1 2 3 27 27 H 1.08994 * 109.46865 * 239.99944 * 2 1 3 28 28 H 1.09002 * 109.46885 * 119.99766 * 2 1 3 29 29 H 1.09000 * 109.47440 * 210.00730 * 6 5 4 30 30 H 1.09002 * 109.47172 * 330.00553 * 6 5 4 31 31 H 1.08999 * 109.47151 * 44.40774 * 8 7 6 32 32 H 1.09007 * 109.46737 * 164.41180 * 8 7 6 33 33 H 0.96996 * 119.99472 * 180.02562 * 12 11 9 34 34 H 1.09003 * 109.47019 * 283.89520 * 17 7 6 35 35 H 1.08994 * 109.47007 * 43.89583 * 17 7 6 36 36 H 1.09005 * 109.47170 * 57.09298 * 18 17 7 37 37 H 1.09000 * 109.47111 * 60.00037 * 19 18 17 38 38 H 1.09004 * 109.46920 * 179.97438 * 19 18 17 39 39 H 1.08995 * 109.47077 * 299.99636 * 19 18 17 40 40 H 1.09000 * 109.47576 * 300.00240 * 20 18 17 41 41 H 1.09001 * 109.47183 * 60.00237 * 20 18 17 42 42 H 1.09004 * 109.47187 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3755 2.1143 -1.0550 5 6 2.7663 3.3338 -0.6868 6 6 3.2360 4.4214 -1.6181 7 7 2.0864 5.2299 -2.0459 8 6 2.5275 6.4358 -2.7596 9 6 3.0571 7.4403 -1.7690 10 1 3.1395 7.1772 -0.7248 11 6 3.4366 8.6953 -2.1957 12 7 3.8993 9.5718 -1.3312 13 14 3.2936 9.1506 -4.0018 14 1 1.9550 9.7396 -4.2593 15 1 4.3449 10.1407 -4.3474 16 1 3.4671 7.9332 -4.8343 17 6 1.1635 4.4382 -2.8702 18 6 -0.1838 5.1574 -2.9612 19 6 -1.1215 4.3695 -3.8783 20 6 -0.8026 5.2596 -1.5656 21 7 2.6773 3.4334 0.6135 22 7 2.2006 2.1986 1.0833 23 1 2.0274 1.9554 2.0062 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8932 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.9551 5.0569 -1.1014 30 1 3.7095 3.9725 -2.4913 31 1 3.3146 6.1724 -3.4661 32 1 1.6844 6.8674 -3.2991 33 1 4.1659 10.4547 -1.6314 34 1 1.5803 4.3195 -3.8704 35 1 1.0219 3.4572 -2.4168 36 1 -0.0349 6.1581 -3.3668 37 1 -1.2704 3.3689 -3.4726 38 1 -2.0815 4.8817 -3.9427 39 1 -0.6807 4.2967 -4.8725 40 1 -0.9515 4.2589 -1.1599 41 1 -0.1346 5.8208 -0.9122 42 1 -1.7627 5.7715 -1.6304 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771762224.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:38 Heat of formation + Delta-G solvation = 51.538049 kcal Electronic energy + Delta-G solvation = -20986.575971 eV Core-core repulsion = 18002.118562 eV Total energy + Delta-G solvation = -2984.457409 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.15102 -39.18586 -35.83661 -35.17068 -34.43518 -33.43958 -31.35637 -29.95357 -28.17411 -27.92440 -25.52662 -25.17420 -23.02390 -21.84762 -21.28110 -20.46397 -19.00195 -18.78739 -17.07989 -16.54251 -16.42489 -15.87351 -15.70724 -15.62608 -15.04833 -14.77184 -14.52955 -14.26936 -13.87136 -13.56072 -13.44031 -13.18847 -13.08194 -13.04944 -12.75016 -12.47716 -12.42968 -12.28575 -11.93600 -11.90809 -11.78669 -11.69564 -11.48522 -11.29357 -11.04082 -10.99493 -10.73302 -10.49390 -9.02456 -8.24162 -6.26709 0.64027 1.36570 1.37748 1.48793 1.75465 1.80552 2.37188 2.94634 3.09485 3.34395 3.60999 3.85741 3.97532 4.13166 4.25719 4.32516 4.36042 4.52753 4.53248 4.70355 4.72912 4.74323 4.83882 4.86886 4.94238 5.00074 5.00667 5.05044 5.07709 5.15813 5.28062 5.31201 5.35883 5.39942 5.48071 5.56469 5.59895 6.02409 6.25174 6.32479 6.66281 6.79433 7.14343 7.35948 8.93024 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.020843 B = 0.005690 C = 0.004884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.026086 B = 4919.718335 C = 5732.054577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.040 4.040 3 C 0.288 3.712 4 N -0.559 5.559 5 C 0.239 3.761 6 C 0.156 3.844 7 N -0.530 5.530 8 C 0.176 3.824 9 C -0.509 4.509 10 H 0.033 0.967 11 C 0.009 3.991 12 N -0.949 5.949 13 Si 0.944 3.056 14 H -0.265 1.265 15 H -0.282 1.282 16 H -0.249 1.249 17 C 0.060 3.940 18 C -0.095 4.095 19 C -0.133 4.133 20 C -0.121 4.121 21 N -0.335 5.335 22 N -0.476 5.476 23 H 0.453 0.547 24 H 0.097 0.903 25 H 0.055 0.945 26 H 0.045 0.955 27 H 0.109 0.891 28 H 0.120 0.880 29 H 0.075 0.925 30 H 0.059 0.941 31 H -0.008 1.008 32 H 0.036 0.964 33 H 0.266 0.734 34 H 0.028 0.972 35 H 0.080 0.920 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.044 0.956 41 H 0.033 0.967 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.215 -21.738 -0.614 23.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.079 4.079 3 C 0.010 3.990 4 N -0.290 5.290 5 C -0.044 4.044 6 C 0.025 3.975 7 N -0.255 5.255 8 C 0.049 3.951 9 C -0.548 4.548 10 H 0.051 0.949 11 C -0.188 4.188 12 N -0.591 5.591 13 Si 0.768 3.232 14 H -0.190 1.190 15 H -0.208 1.208 16 H -0.173 1.173 17 C -0.068 4.068 18 C -0.114 4.114 19 C -0.191 4.191 20 C -0.179 4.179 21 N -0.164 5.164 22 N -0.195 5.195 23 H 0.301 0.699 24 H 0.115 0.885 25 H 0.074 0.926 26 H 0.064 0.936 27 H 0.127 0.873 28 H 0.138 0.862 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.009 0.991 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.046 0.954 35 H 0.098 0.902 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.063 0.937 41 H 0.053 0.947 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.190 -20.857 -0.148 22.792 hybrid contribution 0.713 0.543 -0.313 0.949 sum -8.477 -20.313 -0.461 22.016 Atomic orbital electron populations 1.21744 0.92531 1.04099 1.01951 1.20439 0.97185 0.83410 1.06910 1.25247 0.94328 0.97301 0.82161 1.70321 1.23236 1.04452 1.30972 1.23950 0.97313 0.93054 0.90086 1.20048 0.92937 0.89741 0.94754 1.61732 1.15190 1.06165 1.42376 1.19953 0.94280 0.88147 0.92688 1.21218 1.41117 0.97430 0.94995 0.94876 1.25812 0.94491 0.96042 1.02418 1.70065 1.45674 1.06626 1.36688 0.85759 0.78520 0.78949 0.80010 1.19015 1.20764 1.17303 1.22272 0.92772 0.96973 0.94813 1.21142 0.94426 0.99132 0.96675 1.21717 0.98773 0.99945 0.98651 1.21516 0.99468 1.00448 0.96425 1.78076 1.22985 1.02094 1.13288 1.47904 1.51345 1.08969 1.11308 0.69930 0.88476 0.92603 0.93600 0.87289 0.86153 0.90652 0.92318 0.99051 0.94613 0.92539 0.95369 0.90205 0.92807 0.92133 0.91529 0.92302 0.93696 0.94738 0.92405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.89 71.98 0.71 -0.85 16 2 C -0.04 -0.48 6.56 29.85 0.20 -0.28 16 3 C 0.29 6.88 7.49 138.23 1.04 7.91 16 4 N -0.56 -18.13 10.06 -179.73 -1.81 -19.93 16 5 C 0.24 9.21 6.81 138.62 0.94 10.16 16 6 C 0.16 6.63 5.42 85.55 0.46 7.09 16 7 N -0.53 -23.46 3.73 -905.37 -3.38 -26.84 16 8 C 0.18 8.72 3.65 85.55 0.31 9.03 16 9 C -0.51 -30.43 9.16 25.60 0.23 -30.19 16 10 H 0.03 2.24 7.89 -2.91 -0.02 2.22 16 11 C 0.01 0.55 5.47 84.66 0.46 1.02 16 12 N -0.95 -60.92 13.96 21.45 0.30 -60.62 16 13 Si 0.94 44.89 27.37 68.60 1.88 46.77 16 14 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 15 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 16 H -0.25 -11.04 6.69 99.48 0.67 -10.37 16 17 C 0.06 2.18 4.24 86.30 0.37 2.55 16 18 C -0.09 -3.16 2.92 -10.79 -0.03 -3.19 16 19 C -0.13 -3.30 9.19 71.98 0.66 -2.64 16 20 C -0.12 -4.13 9.06 71.98 0.65 -3.48 16 21 N -0.33 -12.72 12.80 -51.33 -0.66 -13.38 16 22 N -0.48 -12.18 7.45 -50.71 -0.38 -12.56 16 23 H 0.45 7.69 8.96 -213.10 -1.91 5.78 16 24 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 26 H 0.04 0.70 8.14 -2.38 -0.02 0.68 16 27 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.08 3.63 7.31 -2.39 -0.02 3.61 16 30 H 0.06 2.33 8.12 -2.39 -0.02 2.31 16 31 H -0.01 -0.40 7.40 -2.39 -0.02 -0.42 16 32 H 0.04 1.73 5.38 -2.38 -0.01 1.72 16 33 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 34 H 0.03 1.00 8.05 -2.39 -0.02 0.98 16 35 H 0.08 2.86 6.04 -2.39 -0.01 2.85 16 36 H 0.05 1.99 6.47 -2.38 -0.02 1.98 16 37 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.04 1.42 8.14 -2.39 -0.02 1.41 16 41 H 0.03 1.44 7.69 -2.39 -0.02 1.42 16 42 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -76.16 339.19 1.01 -75.15 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -0.95 Total: 14.29 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: 6.01 Total: -2.89 kcal Atomic # 7 Polarization: -127.41 SS G_CDS: -5.92 Total: -133.33 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.88 Total: 46.77 kcal Total: -76.16 1.01 -75.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771762224.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.691 kcal (2) G-P(sol) polarization free energy of solvation -76.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds